Wall clock time and date at job start Tue Mar 31 2020 17:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47572 * 2 1 4 4 C 1.46496 * 119.99680 * 275.00318 * 3 2 1 5 5 C 1.50700 * 109.47319 * 274.99568 * 4 3 2 6 6 H 1.07997 * 119.99564 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00231 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99971 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46935 * 89.99698 * 9 7 5 11 11 H 1.48503 * 109.46913 * 209.99624 * 9 7 5 12 12 H 1.48499 * 109.47204 * 329.99433 * 9 7 5 13 13 S 1.65601 * 120.00119 * 95.00005 * 3 2 1 14 14 O 1.42103 * 106.39886 * 336.46234 * 13 3 2 15 15 O 1.42095 * 106.40145 * 203.54358 * 13 3 2 16 16 N 1.65596 * 107.21751 * 90.00030 * 13 3 2 17 17 C 1.46494 * 120.00265 * 269.99699 * 16 13 3 18 18 C 1.46505 * 119.99655 * 90.00120 * 16 13 3 19 19 C 1.52997 * 109.47212 * 94.99926 * 18 16 13 20 20 C 1.52992 * 109.47482 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47859 * 179.97438 * 20 19 18 22 22 C 1.48533 * 110.99670 * 52.60024 * 21 20 19 23 23 C 1.54936 * 103.22827 * 159.72645 * 22 21 20 24 24 C 1.54602 * 102.91755 * 322.58844 * 23 22 21 25 25 C 1.47895 * 111.00585 * 169.99973 * 21 20 19 26 26 H 1.09008 * 109.46759 * 300.00249 * 1 2 3 27 27 H 1.09002 * 109.47381 * 59.99588 * 1 2 3 28 28 H 1.08998 * 109.47469 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47148 * 240.00064 * 2 1 3 30 30 H 1.09002 * 109.47381 * 120.00412 * 2 1 3 31 31 H 1.09003 * 109.47788 * 34.99983 * 4 3 2 32 32 H 1.09011 * 109.47276 * 154.99662 * 4 3 2 33 33 H 0.96994 * 119.99922 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47522 * 270.00493 * 17 16 13 35 35 H 1.08998 * 109.46906 * 30.00732 * 17 16 13 36 36 H 1.09003 * 109.46940 * 149.99689 * 17 16 13 37 37 H 1.09002 * 109.47068 * 214.99986 * 18 16 13 38 38 H 1.09001 * 109.47372 * 335.00074 * 18 16 13 39 39 H 1.09002 * 109.47153 * 300.00008 * 19 18 16 40 40 H 1.08998 * 109.47533 * 59.99637 * 19 18 16 41 41 H 1.09002 * 109.47103 * 300.00247 * 20 19 18 42 42 H 1.09001 * 109.47066 * 60.00169 * 20 19 18 43 43 H 1.09002 * 110.67270 * 278.16471 * 22 21 20 44 44 H 1.08998 * 110.66667 * 41.29259 * 22 21 20 45 45 H 1.09002 * 110.72666 * 204.23420 * 23 22 21 46 46 H 1.08998 * 110.72369 * 80.94172 * 23 22 21 47 47 H 1.09001 * 110.30688 * 263.03605 * 24 23 22 48 48 H 1.08996 * 110.30747 * 140.87557 * 24 23 22 49 49 H 1.08994 * 109.91810 * 333.51090 * 25 21 20 50 50 H 1.08999 * 109.91451 * 94.60787 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8824 6 1 4.1720 1.1110 -1.3840 7 6 3.8529 2.3612 -3.0845 8 7 3.0279 3.1861 -3.6916 9 14 5.5093 1.9641 -3.8514 10 1 5.3729 0.7814 -4.7391 11 1 5.9787 3.1278 -4.6457 12 1 6.4929 1.6675 -2.7792 13 16 2.4123 2.1202 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5185 1.1998 16 7 4.0145 1.8135 1.7137 17 6 4.4090 0.6237 2.4717 18 6 5.0374 2.7323 1.2078 19 6 5.4102 3.7335 2.3029 20 6 6.4788 4.6926 1.7749 21 7 6.8365 5.6544 2.8261 22 6 7.2028 4.9555 4.0845 23 6 8.0242 6.0197 4.8548 24 6 8.8206 6.7217 3.7310 25 6 8.0274 6.4422 2.4410 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0756 33 1 3.2797 3.5886 -4.5374 34 1 4.4547 0.8676 3.5331 35 1 3.6772 -0.1681 2.3120 36 1 5.3889 0.2861 2.1340 37 1 5.9221 2.1662 0.9164 38 1 4.6480 3.2687 0.3424 39 1 4.5254 4.2996 2.5942 40 1 5.7995 3.1973 3.1683 41 1 7.3635 4.1262 1.4838 42 1 6.0899 5.2290 0.9093 43 1 6.3098 4.6789 4.6451 44 1 7.8129 4.0774 3.8733 45 1 8.6991 5.5449 5.5670 46 1 7.3643 6.7258 5.3588 47 1 9.8231 6.3000 3.6576 48 1 8.8733 7.7942 3.9179 49 1 8.6409 5.8713 1.7442 50 1 7.7187 7.3808 1.9808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337262876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:54 Heat of formation + Delta-G solvation = -99.264653 kcal Electronic energy + Delta-G solvation = -28756.913015 eV Core-core repulsion = 24944.743367 eV Total energy + Delta-G solvation = -3812.169648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98111 -38.37711 -37.70992 -37.62475 -36.86094 -34.67453 -34.32869 -31.53715 -31.03958 -29.75968 -28.47896 -27.47667 -25.22173 -24.89609 -23.24132 -23.13725 -21.70855 -21.27277 -19.85930 -18.70956 -18.55211 -18.18930 -17.51681 -16.98351 -16.85235 -16.45815 -16.06804 -15.67905 -15.34479 -15.15143 -14.88828 -14.78248 -14.56685 -14.14442 -13.91378 -13.78091 -13.66796 -13.55968 -13.37836 -13.35589 -13.17351 -13.03923 -12.83042 -12.71883 -12.68717 -12.56489 -12.36649 -12.25994 -12.19794 -12.11475 -12.06847 -11.95153 -11.71760 -11.58915 -11.55164 -11.39342 -10.56582 -10.03454 -9.73700 -9.36157 -8.14473 -6.28360 -0.30528 1.44285 1.44752 1.54892 1.98293 2.43639 2.55233 3.03443 3.17427 3.39813 3.70261 3.76238 3.82283 3.96756 4.08172 4.08485 4.27759 4.31910 4.37793 4.42171 4.46118 4.48093 4.59724 4.65798 4.68738 4.72149 4.74241 4.82554 4.88984 4.92517 4.97565 4.98759 4.99667 5.07121 5.12681 5.17561 5.25091 5.25974 5.30318 5.33276 5.39531 5.52140 5.67908 5.78466 5.98823 6.01251 6.08443 6.12807 6.83883 7.41823 8.93849 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.004320 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.119410 B = 6480.376265 C = 8363.594812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.256 1.256 13 S 2.791 3.209 14 O -1.003 7.003 15 O -1.013 7.013 16 N -1.003 6.003 17 C 0.090 3.910 18 C 0.131 3.869 19 C -0.127 4.127 20 C 0.053 3.947 21 N -0.539 5.539 22 C 0.029 3.971 23 C -0.121 4.121 24 C -0.126 4.126 25 C 0.029 3.971 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.046 0.954 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 -2.946 14.221 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.839 5.839 4 C 0.138 3.862 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.569 5.569 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.179 1.179 13 S 2.800 3.200 14 O -0.987 6.987 15 O -0.998 6.998 16 N -0.844 5.844 17 C -0.055 4.055 18 C 0.004 3.996 19 C -0.167 4.167 20 C -0.076 4.076 21 N -0.264 5.264 22 C -0.099 4.099 23 C -0.159 4.159 24 C -0.164 4.164 25 C -0.099 4.099 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.984 -2.028 14.688 17.875 hybrid contribution 1.100 -0.467 -1.469 1.894 sum 11.084 -2.494 13.219 17.430 Atomic orbital electron populations 1.22203 0.96012 1.03313 1.01230 1.21274 0.94623 0.81344 1.03247 1.57729 1.79265 1.24044 1.22832 1.18706 0.96665 0.90636 0.80196 1.21801 1.02425 1.27444 1.05923 0.90840 1.25804 1.00731 0.94646 0.97543 1.70078 1.38122 1.31213 1.17533 0.85570 0.79931 0.77514 0.78796 1.20083 1.21524 1.17950 1.01470 0.73415 0.72503 0.72585 1.93508 1.71378 1.76312 1.57518 1.93526 1.86615 1.33299 1.86322 1.57646 1.24044 1.34672 1.67994 1.21675 1.02851 0.85124 0.95853 1.21227 0.91959 0.90714 0.95672 1.21977 0.98818 0.96643 0.99233 1.22139 0.97588 0.93255 0.94585 1.64757 1.34673 1.22767 1.04182 1.23322 0.99237 0.96431 0.90893 1.22496 0.98440 0.97508 0.97424 1.22390 0.98781 1.01861 0.93340 1.22950 0.90377 0.98447 0.98126 0.93588 0.93476 0.88855 0.90046 0.89600 0.96405 0.96798 0.92676 0.91627 0.91167 0.88798 0.88604 0.92072 0.93258 0.89686 0.93097 0.91979 0.90525 0.92942 0.89245 0.91163 0.90273 0.90300 0.93528 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 10.24 71.98 0.74 -4.53 16 2 C 0.12 4.08 6.06 86.38 0.52 4.60 16 3 N -1.00 -41.76 2.83 -519.84 -1.47 -43.23 16 4 C 0.26 13.33 5.43 85.63 0.47 13.80 16 5 C -0.54 -27.56 9.38 25.60 0.24 -27.32 16 6 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.01 0.65 5.46 84.65 0.46 1.11 16 8 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 9 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 13 S 2.79 114.31 5.97 -56.49 -0.34 113.97 16 14 O -1.00 -40.90 16.18 -128.00 -2.07 -42.97 16 15 O -1.01 -49.75 15.66 -128.00 -2.00 -51.76 16 16 N -1.00 -32.82 3.24 -539.14 -1.75 -34.56 16 17 C 0.09 2.11 10.33 127.77 1.32 3.43 16 18 C 0.13 4.23 5.37 86.38 0.46 4.69 16 19 C -0.13 -3.70 5.20 30.59 0.16 -3.54 16 20 C 0.05 1.45 5.03 86.30 0.43 1.89 16 21 N -0.54 -13.60 5.40 -883.07 -4.76 -18.36 16 22 C 0.03 0.57 5.10 86.65 0.44 1.02 16 23 C -0.12 -1.90 7.06 31.80 0.22 -1.68 16 24 C -0.13 -1.94 6.93 31.47 0.22 -1.73 16 25 C 0.03 0.60 6.69 86.45 0.58 1.18 16 26 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.72 8.11 -2.38 -0.02 2.70 16 30 H 0.09 2.46 7.26 -2.39 -0.02 2.45 16 31 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.01 0.81 6.92 -2.38 -0.02 0.79 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.59 7.44 -2.39 -0.02 1.57 16 36 H 0.09 1.73 7.94 -2.39 -0.02 1.71 16 37 H 0.10 2.60 7.96 -2.39 -0.02 2.59 16 38 H 0.06 2.47 7.61 -2.39 -0.02 2.45 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.04 6.79 -2.39 -0.02 2.02 16 41 H 0.05 1.22 7.81 -2.39 -0.02 1.20 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 1.60 7.67 -2.39 -0.02 1.59 16 44 H 0.05 0.96 8.00 -2.39 -0.02 0.94 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 0.93 7.57 -2.39 -0.02 0.92 16 50 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -68.41 406.57 -2.94 -71.35 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.88 Total: 22.97 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 6.27 Total: -7.08 kcal Atomic # 7 Polarization: -141.95 SS G_CDS: -7.70 Total: -149.64 kcal Atomic # 8 Polarization: -90.65 SS G_CDS: -4.08 Total: -94.73 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 114.31 SS G_CDS: -0.34 Total: 113.97 kcal Total: -68.41 -2.94 -71.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337262876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.913 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds