Wall clock time and date at job start Tue Mar 31 2020 17:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 C 1.52998 * 109.47362 * 120.00117 * 2 1 3 5 5 H 1.08999 * 109.49382 * 179.19545 * 4 2 1 6 6 C 1.53239 * 109.49105 * 299.25369 * 4 2 1 7 7 N 1.47084 * 108.51791 * 173.78976 * 6 4 2 8 8 S 1.65602 * 120.87721 * 128.81562 * 7 6 4 9 9 O 1.42099 * 106.39936 * 203.53295 * 8 7 6 10 10 O 1.42093 * 106.40587 * 336.45687 * 8 7 6 11 11 N 1.65601 * 107.21980 * 90.00000 * 8 7 6 12 12 C 1.46499 * 120.00194 * 89.99249 * 11 8 7 13 13 C 1.46507 * 119.99945 * 270.00088 * 11 8 7 14 14 H 1.09003 * 109.46842 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.46731 * 239.99703 * 13 11 8 16 16 C 1.50696 * 109.47273 * 119.99714 * 13 11 8 17 17 H 1.07998 * 120.00561 * 5.65073 * 16 13 11 18 18 C 1.37885 * 119.99684 * 185.65198 * 16 13 11 19 19 N 1.31513 * 119.99966 * 9.26836 * 18 16 13 20 20 Si 1.86798 * 119.99821 * 189.26948 * 18 16 13 21 21 H 1.48498 * 109.46943 * 84.99186 * 20 18 16 22 22 H 1.48504 * 109.47072 * 204.99336 * 20 18 16 23 23 H 1.48504 * 109.47023 * 324.99035 * 20 18 16 24 24 C 1.47075 * 118.23845 * 309.08473 * 7 6 4 25 25 C 1.52773 * 108.76744 * 50.85076 * 24 7 6 26 26 N 1.46897 * 109.42462 * 306.42811 * 25 24 7 27 27 C 1.46904 * 111.00315 * 187.10943 * 26 25 24 28 28 H 1.09007 * 109.47245 * 306.27881 * 1 2 3 29 29 H 1.09001 * 109.47610 * 66.27348 * 1 2 3 30 30 H 1.09001 * 109.47402 * 186.28196 * 1 2 3 31 31 H 1.09002 * 109.46789 * 240.00123 * 2 1 3 32 32 H 1.09001 * 109.47591 * 60.00012 * 3 2 1 33 33 H 1.09003 * 109.47307 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47238 * 300.00116 * 3 2 1 35 35 H 1.08997 * 109.63551 * 54.07739 * 6 4 2 36 36 H 1.09007 * 109.78434 * 293.58987 * 6 4 2 37 37 H 1.09004 * 109.46761 * 90.00462 * 12 11 8 38 38 H 1.09007 * 109.47251 * 209.99859 * 12 11 8 39 39 H 1.08998 * 109.47401 * 330.00060 * 12 11 8 40 40 H 1.08998 * 109.47084 * 303.21194 * 15 13 11 41 41 H 1.09007 * 109.47170 * 63.21178 * 15 13 11 42 42 H 1.09001 * 109.46836 * 183.20695 * 15 13 11 43 43 H 0.96996 * 119.99546 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.62634 * 170.62462 * 24 7 6 45 45 H 1.08998 * 109.62963 * 291.20191 * 24 7 6 46 46 H 1.09006 * 109.56823 * 186.37141 * 25 24 7 47 47 H 1.09007 * 109.35691 * 66.35587 * 25 24 7 48 48 H 1.09003 * 109.47379 * 295.08663 * 27 26 25 49 49 H 1.09009 * 109.46919 * 55.08074 * 27 26 25 50 50 H 1.09001 * 109.47537 * 175.07756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1299 -0.7340 1.2423 6 6 1.5450 0.0115 2.5007 7 7 1.9188 -0.7789 3.6834 8 16 2.7171 -0.0801 4.9550 9 8 3.3972 -1.1308 5.6278 10 8 3.3776 1.0648 4.4337 11 7 1.5676 0.4814 6.0065 12 6 1.0690 -0.3848 7.0776 13 6 1.0490 1.8443 5.8654 14 1 1.5345 2.3321 5.0200 15 6 1.3370 2.6343 7.1437 16 6 -0.4386 1.7940 5.6303 17 1 -0.9618 0.8506 5.6807 18 6 -1.1320 2.9527 5.3509 19 7 -0.4784 4.0681 5.1094 20 14 -2.9996 2.9380 5.3155 21 1 -3.5222 3.1259 6.6927 22 1 -3.4868 4.0393 4.4466 23 1 -3.4743 1.6372 4.7790 24 6 1.5702 -2.2076 3.7041 25 6 2.0589 -2.8517 2.4079 26 7 1.5333 -2.1001 1.2605 27 6 1.8408 -2.7842 -0.0027 28 1 -0.3634 0.6081 0.8285 29 1 -0.3634 0.4135 -0.9408 30 1 -0.3634 -1.0215 0.1124 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 0.4609 0.1171 2.4585 36 1 2.0069 0.9972 2.5580 37 1 1.6850 -0.2536 7.9673 38 1 0.0369 -0.1202 7.3082 39 1 1.1139 -1.4248 6.7546 40 1 0.9000 2.1161 7.9972 41 1 2.4147 2.7195 7.2832 42 1 0.9015 3.6301 7.0612 43 1 -0.9662 4.8830 4.9125 44 1 2.0515 -2.6895 4.5551 45 1 0.4886 -2.3196 3.7799 46 1 1.7093 -3.8830 2.3582 47 1 3.1487 -2.8355 2.3849 48 1 2.9202 -2.8003 -0.1537 49 1 1.4642 -3.8064 0.0367 50 1 1.3662 -2.2537 -0.8282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337747600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:20 Heat of formation + Delta-G solvation = -66.551882 kcal Electronic energy + Delta-G solvation = -30201.395255 eV Core-core repulsion = 26390.644139 eV Total energy + Delta-G solvation = -3810.751116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.55575 -36.76343 -36.11705 -35.32560 -35.22597 -34.19817 -32.55963 -29.79528 -29.17841 -27.88036 -26.91426 -25.52218 -25.14409 -24.25569 -23.70484 -21.28317 -20.74004 -18.95884 -18.33230 -17.31113 -16.78050 -16.39957 -16.02494 -15.34569 -15.09464 -14.88717 -14.78435 -14.42838 -14.04715 -13.73468 -13.46361 -13.25729 -13.02373 -12.72776 -12.63347 -12.48652 -12.10591 -12.03031 -11.92274 -11.84136 -11.78617 -11.67448 -11.51411 -11.46476 -11.20782 -11.01309 -10.96562 -10.88117 -10.83097 -10.63880 -10.50062 -10.44716 -10.30596 -10.21014 -10.03476 -9.33901 -8.77493 -8.45088 -8.21779 -7.95090 -6.11514 -4.16010 1.22322 3.25461 3.32982 3.33810 3.44640 3.87392 4.10166 4.36539 4.74001 4.76654 4.97154 5.04659 5.16678 5.20594 5.23751 5.25302 5.38455 5.47505 5.52509 5.57207 5.65337 5.68706 5.73358 5.78423 5.84359 5.85082 6.04027 6.08340 6.14633 6.17044 6.20823 6.27552 6.37599 6.39769 6.48332 6.60889 6.62637 6.77185 6.79594 6.92297 7.06168 7.07450 7.09553 7.43490 7.62232 7.75537 7.94622 8.24579 8.86955 9.48909 10.95656 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.005757 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.330900 B = 4862.392473 C = 6155.532572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.155 4.155 4 C 0.079 3.921 5 H 0.042 0.958 6 C 0.131 3.869 7 N -1.007 6.007 8 S 2.780 3.220 9 O -0.999 6.999 10 O -0.979 6.979 11 N -0.990 5.990 12 C 0.107 3.893 13 C 0.266 3.734 14 H 0.064 0.936 15 C -0.139 4.139 16 C -0.526 4.526 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.125 3.875 25 C 0.046 3.954 26 N -0.532 5.532 27 C 0.022 3.978 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.075 0.925 43 H 0.264 0.736 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.021 0.979 49 H 0.065 0.935 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -11.333 -8.085 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.213 4.213 4 C -0.031 4.031 5 H 0.060 0.940 6 C 0.006 3.994 7 N -0.846 5.846 8 S 2.791 3.209 9 O -0.983 6.983 10 O -0.963 6.963 11 N -0.832 5.832 12 C -0.039 4.039 13 C 0.163 3.837 14 H 0.082 0.918 15 C -0.199 4.199 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.001 4.001 25 C -0.083 4.083 26 N -0.257 5.257 27 C -0.126 4.126 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.084 0.916 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.069 -11.045 -7.946 13.948 hybrid contribution -0.631 -0.016 -0.129 0.644 sum 2.439 -11.061 -8.076 13.911 Atomic orbital electron populations 1.21844 0.94156 1.02881 1.01366 1.21170 0.97194 0.96019 0.96328 1.21944 1.00922 0.95629 1.02778 1.22034 0.96804 0.88386 0.95848 0.93971 1.21631 1.01926 0.93842 0.82037 1.58265 1.76325 1.17039 1.32922 1.01882 0.73892 0.72512 0.72649 1.93514 1.72396 1.58212 1.74173 1.93564 1.72626 1.50430 1.79690 1.57776 1.59794 1.23630 1.42019 1.21173 1.01085 0.91790 0.89884 1.18728 0.94503 0.74980 0.95452 0.91836 1.21987 0.97187 1.02222 0.98465 1.21316 0.92215 0.93939 1.49080 0.91893 1.24907 0.98330 0.95582 0.94700 1.69958 1.35496 1.00366 1.46370 0.86637 0.85813 0.77707 0.77987 1.20607 1.21300 1.19927 1.21335 1.01201 0.80219 0.97373 1.22342 0.97536 0.97464 0.90969 1.61877 1.59544 1.01912 1.02324 1.22427 0.98645 0.99109 0.92422 0.91860 0.93558 0.91414 0.91290 0.91294 0.92809 0.92476 0.89854 0.88436 0.93993 0.90245 0.93303 0.94653 0.96493 0.90628 0.92634 0.89148 0.90797 0.89822 0.94686 0.96025 0.91640 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.41 37.16 0.31 -1.46 16 2 C -0.09 -1.06 2.20 -90.62 -0.20 -1.26 16 3 C -0.15 -1.94 8.83 37.16 0.33 -1.61 16 4 C 0.08 1.09 1.83 -67.59 -0.12 0.97 16 5 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 6 C 0.13 2.19 5.18 -3.60 -0.02 2.17 16 7 N -1.01 -17.24 3.39 -113.50 -0.39 -17.62 16 8 S 2.78 56.13 6.11 -107.50 -0.66 55.47 16 9 O -1.00 -20.66 15.81 -57.17 -0.90 -21.57 16 10 O -0.98 -22.61 15.31 -57.17 -0.88 -23.49 16 11 N -0.99 -20.67 3.12 -115.84 -0.36 -21.03 16 12 C 0.11 1.91 9.21 59.85 0.55 2.46 16 13 C 0.27 6.43 2.49 -69.08 -0.17 6.26 16 14 H 0.06 1.72 6.85 -51.93 -0.36 1.36 16 15 C -0.14 -3.24 9.12 37.16 0.34 -2.90 16 16 C -0.53 -13.26 8.01 -34.44 -0.28 -13.54 16 17 H 0.06 1.56 7.15 -52.49 -0.38 1.18 16 18 C 0.07 1.76 5.18 -17.82 -0.09 1.67 16 19 N -0.88 -24.03 12.16 55.43 0.67 -23.36 16 20 Si 0.89 20.17 29.55 -169.99 -5.02 15.15 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.13 1.76 6.64 -3.84 -0.03 1.73 16 25 C 0.05 0.57 5.60 -3.94 -0.02 0.54 16 26 N -0.53 -6.58 3.86 -234.87 -0.91 -7.49 16 27 C 0.02 0.22 8.80 60.07 0.53 0.75 16 28 H 0.06 0.88 6.66 -51.93 -0.35 0.53 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.83 7.03 -51.93 -0.37 0.46 16 31 H 0.07 0.73 6.39 -51.93 -0.33 0.40 16 32 H 0.07 0.99 6.57 -51.93 -0.34 0.65 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.08 1.44 6.31 -51.93 -0.33 1.11 16 36 H 0.10 1.80 5.60 -51.92 -0.29 1.51 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.42 6.92 -51.92 -0.36 1.06 16 39 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 40 H 0.03 0.76 7.56 -51.93 -0.39 0.36 16 41 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.07 1.90 6.84 -51.93 -0.36 1.54 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.09 1.23 6.93 -51.93 -0.36 0.87 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 47 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 48 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.06 0.56 8.07 -51.92 -0.42 0.14 16 50 H 0.07 0.68 5.91 -51.93 -0.31 0.37 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -29.79 384.36 -10.21 -40.00 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.69 Total: 2.35 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 1.13 Total: -4.20 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -0.98 Total: -69.50 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.78 Total: -45.06 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 56.13 SS G_CDS: -0.66 Total: 55.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.79 -10.21 -40.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.556 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds