Wall clock time and date at job start Tue Mar 31 2020 17:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 C 1.52998 * 109.47362 * 120.00117 * 2 1 3 5 5 H 1.08999 * 109.49382 * 179.19545 * 4 2 1 6 6 C 1.53239 * 109.49105 * 299.25369 * 4 2 1 7 7 N 1.47084 * 108.51791 * 173.78976 * 6 4 2 8 8 S 1.65602 * 120.87721 * 128.81562 * 7 6 4 9 9 O 1.42099 * 106.39936 * 203.53295 * 8 7 6 10 10 O 1.42093 * 106.40587 * 336.45687 * 8 7 6 11 11 N 1.65601 * 107.21980 * 90.00000 * 8 7 6 12 12 C 1.46499 * 120.00194 * 89.99249 * 11 8 7 13 13 C 1.46507 * 119.99945 * 270.00088 * 11 8 7 14 14 H 1.09003 * 109.46842 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.46731 * 239.99703 * 13 11 8 16 16 C 1.50696 * 109.47273 * 119.99714 * 13 11 8 17 17 H 1.07998 * 120.00561 * 5.65073 * 16 13 11 18 18 C 1.37885 * 119.99684 * 185.65198 * 16 13 11 19 19 N 1.31513 * 119.99966 * 9.26836 * 18 16 13 20 20 Si 1.86798 * 119.99821 * 189.26948 * 18 16 13 21 21 H 1.48498 * 109.46943 * 84.99186 * 20 18 16 22 22 H 1.48504 * 109.47072 * 204.99336 * 20 18 16 23 23 H 1.48504 * 109.47023 * 324.99035 * 20 18 16 24 24 C 1.47075 * 118.23845 * 309.08473 * 7 6 4 25 25 C 1.52773 * 108.76744 * 50.85076 * 24 7 6 26 26 N 1.46897 * 109.42462 * 306.42811 * 25 24 7 27 27 C 1.46904 * 111.00315 * 187.10943 * 26 25 24 28 28 H 1.09007 * 109.47245 * 306.27881 * 1 2 3 29 29 H 1.09001 * 109.47610 * 66.27348 * 1 2 3 30 30 H 1.09001 * 109.47402 * 186.28196 * 1 2 3 31 31 H 1.09002 * 109.46789 * 240.00123 * 2 1 3 32 32 H 1.09001 * 109.47591 * 60.00012 * 3 2 1 33 33 H 1.09003 * 109.47307 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47238 * 300.00116 * 3 2 1 35 35 H 1.08997 * 109.63551 * 54.07739 * 6 4 2 36 36 H 1.09007 * 109.78434 * 293.58987 * 6 4 2 37 37 H 1.09004 * 109.46761 * 90.00462 * 12 11 8 38 38 H 1.09007 * 109.47251 * 209.99859 * 12 11 8 39 39 H 1.08998 * 109.47401 * 330.00060 * 12 11 8 40 40 H 1.08998 * 109.47084 * 303.21194 * 15 13 11 41 41 H 1.09007 * 109.47170 * 63.21178 * 15 13 11 42 42 H 1.09001 * 109.46836 * 183.20695 * 15 13 11 43 43 H 0.96996 * 119.99546 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.62634 * 170.62462 * 24 7 6 45 45 H 1.08998 * 109.62963 * 291.20191 * 24 7 6 46 46 H 1.09006 * 109.56823 * 186.37141 * 25 24 7 47 47 H 1.09007 * 109.35691 * 66.35587 * 25 24 7 48 48 H 1.09003 * 109.47379 * 295.08663 * 27 26 25 49 49 H 1.09009 * 109.46919 * 55.08074 * 27 26 25 50 50 H 1.09001 * 109.47537 * 175.07756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1299 -0.7340 1.2423 6 6 1.5450 0.0115 2.5007 7 7 1.9188 -0.7789 3.6834 8 16 2.7171 -0.0801 4.9550 9 8 3.3972 -1.1308 5.6278 10 8 3.3776 1.0648 4.4337 11 7 1.5676 0.4814 6.0065 12 6 1.0690 -0.3848 7.0776 13 6 1.0490 1.8443 5.8654 14 1 1.5345 2.3321 5.0200 15 6 1.3370 2.6343 7.1437 16 6 -0.4386 1.7940 5.6303 17 1 -0.9618 0.8506 5.6807 18 6 -1.1320 2.9527 5.3509 19 7 -0.4784 4.0681 5.1094 20 14 -2.9996 2.9380 5.3155 21 1 -3.5222 3.1259 6.6927 22 1 -3.4868 4.0393 4.4466 23 1 -3.4743 1.6372 4.7790 24 6 1.5702 -2.2076 3.7041 25 6 2.0589 -2.8517 2.4079 26 7 1.5333 -2.1001 1.2605 27 6 1.8408 -2.7842 -0.0027 28 1 -0.3634 0.6081 0.8285 29 1 -0.3634 0.4135 -0.9408 30 1 -0.3634 -1.0215 0.1124 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 0.4609 0.1171 2.4585 36 1 2.0069 0.9972 2.5580 37 1 1.6850 -0.2536 7.9673 38 1 0.0369 -0.1202 7.3082 39 1 1.1139 -1.4248 6.7546 40 1 0.9000 2.1161 7.9972 41 1 2.4147 2.7195 7.2832 42 1 0.9015 3.6301 7.0612 43 1 -0.9662 4.8830 4.9125 44 1 2.0515 -2.6895 4.5551 45 1 0.4886 -2.3196 3.7799 46 1 1.7093 -3.8830 2.3582 47 1 3.1487 -2.8355 2.3849 48 1 2.9202 -2.8003 -0.1537 49 1 1.4642 -3.8064 0.0367 50 1 1.3662 -2.2537 -0.8282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337747600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:19 Heat of formation + Delta-G solvation = -86.760032 kcal Electronic energy + Delta-G solvation = -30202.271546 eV Core-core repulsion = 26390.644139 eV Total energy + Delta-G solvation = -3811.627407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63686 -38.45137 -37.87876 -36.95294 -36.44570 -35.27660 -34.47356 -31.03567 -30.89542 -28.91934 -27.92254 -27.21868 -27.01607 -25.39114 -24.74658 -22.63640 -22.33458 -20.18283 -19.70003 -18.84235 -18.46877 -18.26325 -17.40341 -16.78630 -16.37746 -16.14698 -15.96202 -15.72931 -15.30072 -15.20688 -14.84718 -14.73251 -14.48796 -14.16000 -13.79020 -13.75736 -13.53662 -13.49323 -13.32973 -13.28981 -13.17820 -12.98959 -12.94798 -12.82290 -12.80750 -12.62841 -12.51470 -12.24861 -12.22143 -12.14026 -11.98445 -11.85256 -11.73420 -11.53009 -11.31374 -11.20435 -10.46580 -10.05960 -9.66128 -9.22438 -8.10324 -6.20919 -0.37166 1.45884 1.47818 1.55738 1.92944 2.45974 2.51809 2.89879 3.20119 3.30018 3.61480 3.84348 3.93995 4.09854 4.13409 4.17772 4.28355 4.34232 4.40769 4.54454 4.65933 4.67262 4.70840 4.73396 4.75376 4.77228 4.85433 4.89356 4.90869 4.94426 5.03779 5.06751 5.08374 5.10443 5.12337 5.21104 5.23651 5.24624 5.43986 5.49473 5.58518 5.61614 5.70237 5.85832 6.06231 6.07254 6.16656 6.28139 6.87500 7.47256 8.96845 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.005757 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.330900 B = 4862.392473 C = 6155.532572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.155 4.155 4 C 0.086 3.914 5 H 0.032 0.968 6 C 0.133 3.867 7 N -1.005 6.005 8 S 2.789 3.211 9 O -1.003 7.003 10 O -1.015 7.015 11 N -0.997 5.997 12 C 0.100 3.900 13 C 0.272 3.728 14 H 0.026 0.974 15 C -0.133 4.133 16 C -0.527 4.527 17 H 0.068 0.932 18 C 0.022 3.978 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.117 3.883 25 C 0.048 3.952 26 N -0.537 5.537 27 C 0.022 3.978 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.053 0.947 43 H 0.263 0.737 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.029 0.971 48 H 0.023 0.977 49 H 0.084 0.916 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -13.883 -9.046 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.213 4.213 4 C -0.025 4.025 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.845 5.845 8 S 2.800 3.200 9 O -0.987 6.987 10 O -1.000 7.000 11 N -0.839 5.839 12 C -0.046 4.046 13 C 0.168 3.832 14 H 0.044 0.956 15 C -0.192 4.192 16 C -0.566 4.566 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.008 4.008 25 C -0.082 4.082 26 N -0.262 5.262 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.134 0.866 47 H 0.047 0.953 48 H 0.042 0.958 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.976 -13.627 -8.888 16.389 hybrid contribution -0.252 0.719 0.158 0.778 sum 1.724 -12.908 -8.730 15.678 Atomic orbital electron populations 1.21779 0.94046 1.02654 1.01143 1.21170 0.97143 0.95457 0.96352 1.21943 1.00990 0.96197 1.02181 1.21910 0.96103 0.89568 0.94902 0.94996 1.21580 1.01033 0.93288 0.83374 1.58065 1.76077 1.18462 1.31932 1.01416 0.73859 0.71900 0.72782 1.93497 1.72708 1.57892 1.74609 1.93513 1.73896 1.52243 1.80314 1.57697 1.59775 1.22957 1.43449 1.21396 1.01094 0.92559 0.89527 1.18396 0.93895 0.76542 0.94353 0.95610 1.21882 0.97439 1.01122 0.98801 1.21520 0.92706 0.94032 1.48372 0.91434 1.25626 1.02344 0.95296 0.94511 1.70087 1.37050 1.00945 1.47520 0.85670 0.80854 0.77737 0.77958 1.20106 1.21556 1.19097 1.21643 1.01935 0.78196 0.99058 1.22398 0.97233 0.98742 0.89800 1.61883 1.59449 1.01175 1.03672 1.22514 0.99021 0.99925 0.91091 0.94413 0.91954 0.91018 0.88768 0.94162 0.92740 0.90758 0.90820 0.91240 0.92930 0.90337 0.90785 0.92977 0.96013 0.92808 0.92762 0.88562 0.89935 0.86576 0.95285 0.95808 0.89740 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.41 71.98 0.61 -2.60 16 2 C -0.08 -1.88 2.20 -10.80 -0.02 -1.90 16 3 C -0.16 -3.91 8.83 71.98 0.64 -3.27 16 4 C 0.09 2.31 1.83 44.99 0.08 2.39 16 5 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 6 C 0.13 4.57 5.18 86.35 0.45 5.02 16 7 N -1.00 -34.47 3.39 -513.00 -1.74 -36.21 16 8 S 2.79 114.32 6.11 -56.49 -0.35 113.98 16 9 O -1.00 -40.91 15.81 -128.00 -2.02 -42.93 16 10 O -1.02 -49.14 15.31 -128.00 -1.96 -51.10 16 11 N -1.00 -41.86 3.12 -520.42 -1.62 -43.49 16 12 C 0.10 3.42 9.21 127.77 1.18 4.60 16 13 C 0.27 13.51 2.49 44.24 0.11 13.62 16 14 H 0.03 1.48 6.85 -2.39 -0.02 1.47 16 15 C -0.13 -6.32 9.12 71.98 0.66 -5.66 16 16 C -0.53 -26.80 8.01 25.60 0.21 -26.60 16 17 H 0.07 3.31 7.15 -2.91 -0.02 3.29 16 18 C 0.02 1.17 5.18 84.66 0.44 1.61 16 19 N -0.92 -51.27 12.16 21.45 0.26 -51.01 16 20 Si 0.95 41.39 29.55 68.60 2.03 43.42 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.12 3.08 6.64 86.19 0.57 3.66 16 25 C 0.05 1.04 5.60 86.23 0.48 1.52 16 26 N -0.54 -12.05 3.86 -896.99 -3.46 -15.51 16 27 C 0.02 0.35 8.80 127.69 1.12 1.48 16 28 H 0.04 1.05 6.66 -2.38 -0.02 1.04 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.59 7.03 -2.39 -0.02 1.58 16 31 H 0.09 1.73 6.39 -2.39 -0.02 1.72 16 32 H 0.04 1.23 6.57 -2.39 -0.02 1.22 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.07 2.64 6.31 -2.39 -0.02 2.63 16 36 H 0.07 2.77 5.60 -2.38 -0.01 2.76 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 2.70 6.92 -2.38 -0.02 2.69 16 39 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 40 H 0.05 2.24 7.56 -2.39 -0.02 2.22 16 41 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.05 2.78 6.84 -2.39 -0.02 2.76 16 43 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.10 2.42 6.93 -2.39 -0.02 2.41 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.12 1.81 8.06 -2.38 -0.02 1.79 16 47 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.08 1.09 8.07 -2.38 -0.02 1.07 16 50 H 0.08 1.21 5.91 -2.39 -0.01 1.19 16 Total: -1.00 -65.05 384.36 -1.45 -66.50 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.91 Total: 22.48 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 6.51 Total: -6.13 kcal Atomic # 7 Polarization: -139.65 SS G_CDS: -6.57 Total: -146.22 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -3.98 Total: -94.03 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 114.32 SS G_CDS: -0.35 Total: 113.98 kcal Total: -65.05 -1.45 -66.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.262 kcal (2) G-P(sol) polarization free energy of solvation -65.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds