Wall clock time and date at job start Tue Mar 31 2020 17:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.52992 * 109.46909 * 120.00071 * 2 1 3 5 5 H 1.09008 * 109.49026 * 179.22575 * 4 2 1 6 6 C 1.53235 * 109.49523 * 299.27644 * 4 2 1 7 7 N 1.47083 * 108.52208 * 173.78758 * 6 4 2 8 8 S 1.65602 * 120.87881 * 128.81726 * 7 6 4 9 9 O 1.42102 * 106.40344 * 336.46665 * 8 7 6 10 10 O 1.42095 * 106.40152 * 203.54065 * 8 7 6 11 11 N 1.65607 * 107.21508 * 90.00649 * 8 7 6 12 12 C 1.46496 * 120.00051 * 89.99994 * 11 8 7 13 13 C 1.46500 * 119.99708 * 269.99880 * 11 8 7 14 14 H 1.08995 * 109.47336 * 359.97438 * 13 11 8 15 15 C 1.53003 * 109.47100 * 120.00208 * 13 11 8 16 16 C 1.50695 * 109.47180 * 240.00125 * 13 11 8 17 17 H 1.08004 * 119.99966 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00234 * 180.02562 * 16 13 11 19 19 N 1.31519 * 120.00260 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99997 * 359.97438 * 18 16 13 21 21 H 1.48505 * 109.46850 * 90.00168 * 20 18 16 22 22 H 1.48500 * 109.47298 * 210.00509 * 20 18 16 23 23 H 1.48503 * 109.47036 * 330.00507 * 20 18 16 24 24 C 1.47079 * 118.23954 * 309.09661 * 7 6 4 25 25 C 1.52782 * 108.76802 * 50.84371 * 24 7 6 26 26 N 1.46897 * 109.49278 * 59.15090 * 4 2 1 27 27 C 1.46890 * 111.00498 * 52.78282 * 26 4 2 28 28 H 1.08997 * 109.47106 * 186.64168 * 1 2 3 29 29 H 1.09003 * 109.46836 * 306.64845 * 1 2 3 30 30 H 1.09000 * 109.46957 * 66.64596 * 1 2 3 31 31 H 1.09001 * 109.46998 * 240.00150 * 2 1 3 32 32 H 1.09004 * 109.46756 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47390 * 299.99981 * 3 2 1 34 34 H 1.09001 * 109.47097 * 60.00211 * 3 2 1 35 35 H 1.09002 * 109.62948 * 54.08613 * 6 4 2 36 36 H 1.08999 * 109.79635 * 293.59476 * 6 4 2 37 37 H 1.09003 * 109.47245 * 269.99897 * 12 11 8 38 38 H 1.09001 * 109.46876 * 149.99973 * 12 11 8 39 39 H 1.08991 * 109.47434 * 29.99690 * 12 11 8 40 40 H 1.08994 * 109.46912 * 180.02562 * 15 13 11 41 41 H 1.09002 * 109.46832 * 299.99758 * 15 13 11 42 42 H 1.08995 * 109.47353 * 59.99610 * 15 13 11 43 43 H 0.96993 * 119.99950 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.62933 * 170.62137 * 24 7 6 45 45 H 1.09004 * 109.62708 * 291.19611 * 24 7 6 46 46 H 1.08995 * 109.57008 * 186.36679 * 25 24 7 47 47 H 1.09007 * 109.33340 * 66.34689 * 25 24 7 48 48 H 1.09000 * 109.47251 * 53.26381 * 27 26 4 49 49 H 1.08997 * 109.47597 * 173.26179 * 27 26 4 50 50 H 1.09005 * 109.47111 * 293.26477 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1300 -0.7335 1.2426 6 6 1.5444 0.0111 2.5006 7 7 1.9181 -0.7793 3.6833 8 16 2.7158 -0.0806 4.9553 9 8 3.3761 1.0649 4.4344 10 8 3.3962 -1.1311 5.6281 11 7 1.5657 0.4803 6.0066 12 6 1.0673 -0.3862 7.0775 13 6 1.0468 1.8430 5.8656 14 1 1.5323 2.3312 5.0206 15 6 -0.4635 1.7915 5.6266 16 6 1.3298 2.6211 7.1248 17 1 1.8443 2.1476 7.9480 18 6 0.9309 3.9370 7.2265 19 7 1.1783 4.6161 8.3252 20 14 0.0403 4.7556 5.8031 21 1 -1.4236 4.5593 5.9566 22 1 0.3471 6.2086 5.7972 23 1 0.4896 4.1496 4.5239 24 6 1.5701 -2.2082 3.7037 25 6 2.0595 -2.8519 2.4074 26 7 1.5339 -2.1002 1.2599 27 6 1.8420 -2.7840 -0.0031 28 1 -0.3633 -1.0207 0.1189 29 1 -0.3633 0.6134 0.8245 30 1 -0.3633 0.4074 -0.9435 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.4603 0.1162 2.4582 36 1 2.0058 0.9970 2.5584 37 1 0.2043 -0.9473 6.7189 38 1 0.7745 0.2240 7.9319 39 1 1.8521 -1.0801 7.3784 40 1 -0.8495 2.8053 5.5212 41 1 -0.6682 1.2287 4.7157 42 1 -0.9488 1.3035 6.4718 43 1 0.8980 5.5419 8.3966 44 1 2.0513 -2.6902 4.5548 45 1 0.4885 -2.3206 3.7791 46 1 1.7104 -3.8832 2.3574 47 1 3.1492 -2.8349 2.3850 48 1 2.9096 -2.7049 -0.2080 49 1 1.5641 -3.8351 0.0755 50 1 1.2809 -2.3195 -0.8140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337747602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:26 Heat of formation + Delta-G solvation = -55.437600 kcal Electronic energy + Delta-G solvation = -30062.794495 eV Core-core repulsion = 26252.525330 eV Total energy + Delta-G solvation = -3810.269164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77061 -36.89933 -36.38459 -35.53528 -35.33631 -34.41659 -32.49529 -30.07808 -29.97413 -28.07674 -27.15269 -25.71658 -25.05068 -24.49482 -23.90159 -21.48556 -20.84181 -19.17126 -18.45759 -17.54002 -17.19156 -16.41524 -16.20690 -15.55015 -15.33602 -15.05926 -15.00194 -14.61597 -14.29412 -13.94283 -13.65492 -13.35561 -13.15288 -12.93244 -12.87300 -12.67681 -12.31457 -12.27354 -12.19342 -12.12399 -12.01362 -11.94163 -11.83114 -11.69930 -11.50939 -11.19593 -11.12568 -11.11036 -10.96794 -10.86814 -10.72090 -10.53854 -10.43537 -10.15325 -9.60972 -9.41707 -9.03726 -8.63719 -8.41969 -8.10438 -6.13443 -4.13981 1.02480 3.21640 3.28485 3.33298 3.35569 3.69089 3.92750 4.33906 4.52888 4.56988 4.78732 4.85042 4.97765 5.02489 5.08579 5.17587 5.19449 5.25047 5.35412 5.40559 5.48262 5.51839 5.56547 5.60196 5.60606 5.66951 5.79339 5.83943 5.89836 5.98631 6.01993 6.05100 6.09003 6.15184 6.22451 6.24258 6.31870 6.33245 6.50375 6.60434 6.66932 6.85078 6.88680 6.89577 7.27710 7.40410 7.63236 8.46154 8.89969 9.46392 10.99503 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004921 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.445734 B = 5688.775913 C = 6812.652371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.155 4.155 4 C 0.079 3.921 5 H 0.046 0.954 6 C 0.125 3.875 7 N -1.013 6.013 8 S 2.778 3.222 9 O -0.972 6.972 10 O -0.989 6.989 11 N -0.982 5.982 12 C 0.095 3.905 13 C 0.240 3.760 14 H 0.055 0.945 15 C -0.160 4.160 16 C -0.523 4.523 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.264 1.264 24 C 0.125 3.875 25 C 0.045 3.955 26 N -0.533 5.533 27 C 0.023 3.977 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.037 0.963 48 H 0.024 0.976 49 H 0.065 0.935 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -14.265 -16.668 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.213 4.213 4 C -0.031 4.031 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.852 5.852 8 S 2.789 3.211 9 O -0.956 6.956 10 O -0.973 6.973 11 N -0.823 5.823 12 C -0.052 4.052 13 C 0.135 3.865 14 H 0.072 0.928 15 C -0.219 4.219 16 C -0.562 4.562 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.712 3.288 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.189 1.189 24 C -0.001 4.001 25 C -0.084 4.084 26 N -0.258 5.258 27 C -0.125 4.125 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.084 0.916 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.211 -14.008 -16.378 21.665 hybrid contribution -0.084 0.493 -0.757 0.907 sum -2.295 -13.515 -17.135 21.944 Atomic orbital electron populations 1.21836 0.94257 1.02878 1.01166 1.21179 0.97078 0.96029 0.96555 1.21947 1.01264 0.95580 1.02508 1.22011 0.97126 0.88512 0.95412 0.93608 1.21660 1.01258 0.94261 0.82865 1.58486 1.76663 1.17306 1.32697 1.02010 0.73854 0.72701 0.72583 1.93583 1.72113 1.50196 1.79678 1.93520 1.71834 1.58052 1.73917 1.57452 1.60464 1.22429 1.41977 1.21360 0.98172 0.93746 0.91892 1.19059 0.90291 0.77909 0.99194 0.92781 1.22470 0.99521 1.00087 0.99810 1.21157 1.38568 0.96126 1.00372 0.89999 1.24900 0.95479 0.96912 0.95567 1.69873 1.46694 1.10145 1.26443 0.86949 0.79820 0.78327 0.83709 1.20373 1.22100 1.18909 1.21363 1.01094 0.79988 0.97690 1.22364 0.97786 0.97523 0.90774 1.61883 1.59543 1.01832 1.02500 1.22412 0.98936 0.99007 0.92168 0.91247 0.92391 0.93385 0.91012 0.92532 0.92316 0.91770 0.90433 0.88525 0.94286 0.89355 0.91694 0.93382 0.94901 0.92237 0.92437 0.88784 0.90866 0.89631 0.94470 0.95783 0.91573 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.40 37.16 0.31 -1.04 16 2 C -0.09 -0.87 2.21 -90.62 -0.20 -1.07 16 3 C -0.16 -1.58 8.83 37.16 0.33 -1.25 16 4 C 0.08 0.92 1.81 -67.60 -0.12 0.80 16 5 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 6 C 0.13 1.74 5.18 -3.60 -0.02 1.72 16 7 N -1.01 -15.11 3.39 -113.49 -0.39 -15.50 16 8 S 2.78 53.49 6.16 -107.50 -0.66 52.82 16 9 O -0.97 -21.86 15.31 -57.17 -0.88 -22.74 16 10 O -0.99 -20.00 15.34 -57.17 -0.88 -20.88 16 11 N -0.98 -19.77 3.12 -115.86 -0.36 -20.13 16 12 C 0.09 1.64 9.65 59.84 0.58 2.22 16 13 C 0.24 5.54 2.21 -69.08 -0.15 5.39 16 14 H 0.05 1.32 5.97 -51.93 -0.31 1.01 16 15 C -0.16 -3.25 8.67 37.16 0.32 -2.93 16 16 C -0.52 -14.36 8.57 -34.44 -0.30 -14.66 16 17 H 0.08 2.44 7.58 -52.48 -0.40 2.04 16 18 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 19 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 20 Si 0.88 21.31 24.37 -169.99 -4.14 17.16 16 21 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 24 C 0.12 1.50 6.64 -3.84 -0.03 1.47 16 25 C 0.05 0.47 5.60 -3.94 -0.02 0.45 16 26 N -0.53 -5.51 3.85 -234.89 -0.91 -6.41 16 27 C 0.02 0.19 8.67 60.06 0.52 0.71 16 28 H 0.07 0.66 6.96 -51.93 -0.36 0.30 16 29 H 0.06 0.59 6.68 -51.93 -0.35 0.24 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.63 6.53 -51.93 -0.34 0.29 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 35 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 36 H 0.10 1.48 5.60 -51.93 -0.29 1.19 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.66 7.02 -51.93 -0.36 1.30 16 39 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 40 H 0.05 1.02 3.27 -51.93 -0.17 0.86 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.13 6.93 -51.93 -0.36 0.77 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.70 7.98 -51.93 -0.41 0.29 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.20 8.11 -51.93 -0.42 -0.22 16 49 H 0.07 0.46 7.95 -51.93 -0.41 0.05 16 50 H 0.07 0.54 6.21 -51.93 -0.32 0.22 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -32.52 375.70 -9.15 -41.67 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.50 Total: 0.59 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 1.13 Total: -6.19 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.88 Total: -68.11 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.75 Total: -43.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.66 Total: 52.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.52 -9.15 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.768 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds