Wall clock time and date at job start Tue Mar 31 2020 17:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.52992 * 109.46909 * 120.00071 * 2 1 3 5 5 H 1.09008 * 109.49026 * 179.22575 * 4 2 1 6 6 C 1.53235 * 109.49523 * 299.27644 * 4 2 1 7 7 N 1.47083 * 108.52208 * 173.78758 * 6 4 2 8 8 S 1.65602 * 120.87881 * 128.81726 * 7 6 4 9 9 O 1.42102 * 106.40344 * 336.46665 * 8 7 6 10 10 O 1.42095 * 106.40152 * 203.54065 * 8 7 6 11 11 N 1.65607 * 107.21508 * 90.00649 * 8 7 6 12 12 C 1.46496 * 120.00051 * 89.99994 * 11 8 7 13 13 C 1.46500 * 119.99708 * 269.99880 * 11 8 7 14 14 H 1.08995 * 109.47336 * 359.97438 * 13 11 8 15 15 C 1.53003 * 109.47100 * 120.00208 * 13 11 8 16 16 C 1.50695 * 109.47180 * 240.00125 * 13 11 8 17 17 H 1.08004 * 119.99966 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00234 * 180.02562 * 16 13 11 19 19 N 1.31519 * 120.00260 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99997 * 359.97438 * 18 16 13 21 21 H 1.48505 * 109.46850 * 90.00168 * 20 18 16 22 22 H 1.48500 * 109.47298 * 210.00509 * 20 18 16 23 23 H 1.48503 * 109.47036 * 330.00507 * 20 18 16 24 24 C 1.47079 * 118.23954 * 309.09661 * 7 6 4 25 25 C 1.52782 * 108.76802 * 50.84371 * 24 7 6 26 26 N 1.46897 * 109.49278 * 59.15090 * 4 2 1 27 27 C 1.46890 * 111.00498 * 52.78282 * 26 4 2 28 28 H 1.08997 * 109.47106 * 186.64168 * 1 2 3 29 29 H 1.09003 * 109.46836 * 306.64845 * 1 2 3 30 30 H 1.09000 * 109.46957 * 66.64596 * 1 2 3 31 31 H 1.09001 * 109.46998 * 240.00150 * 2 1 3 32 32 H 1.09004 * 109.46756 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47390 * 299.99981 * 3 2 1 34 34 H 1.09001 * 109.47097 * 60.00211 * 3 2 1 35 35 H 1.09002 * 109.62948 * 54.08613 * 6 4 2 36 36 H 1.08999 * 109.79635 * 293.59476 * 6 4 2 37 37 H 1.09003 * 109.47245 * 269.99897 * 12 11 8 38 38 H 1.09001 * 109.46876 * 149.99973 * 12 11 8 39 39 H 1.08991 * 109.47434 * 29.99690 * 12 11 8 40 40 H 1.08994 * 109.46912 * 180.02562 * 15 13 11 41 41 H 1.09002 * 109.46832 * 299.99758 * 15 13 11 42 42 H 1.08995 * 109.47353 * 59.99610 * 15 13 11 43 43 H 0.96993 * 119.99950 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.62933 * 170.62137 * 24 7 6 45 45 H 1.09004 * 109.62708 * 291.19611 * 24 7 6 46 46 H 1.08995 * 109.57008 * 186.36679 * 25 24 7 47 47 H 1.09007 * 109.33340 * 66.34689 * 25 24 7 48 48 H 1.09000 * 109.47251 * 53.26381 * 27 26 4 49 49 H 1.08997 * 109.47597 * 173.26179 * 27 26 4 50 50 H 1.09005 * 109.47111 * 293.26477 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1300 -0.7335 1.2426 6 6 1.5444 0.0111 2.5006 7 7 1.9181 -0.7793 3.6833 8 16 2.7158 -0.0806 4.9553 9 8 3.3761 1.0649 4.4344 10 8 3.3962 -1.1311 5.6281 11 7 1.5657 0.4803 6.0066 12 6 1.0673 -0.3862 7.0775 13 6 1.0468 1.8430 5.8656 14 1 1.5323 2.3312 5.0206 15 6 -0.4635 1.7915 5.6266 16 6 1.3298 2.6211 7.1248 17 1 1.8443 2.1476 7.9480 18 6 0.9309 3.9370 7.2265 19 7 1.1783 4.6161 8.3252 20 14 0.0403 4.7556 5.8031 21 1 -1.4236 4.5593 5.9566 22 1 0.3471 6.2086 5.7972 23 1 0.4896 4.1496 4.5239 24 6 1.5701 -2.2082 3.7037 25 6 2.0595 -2.8519 2.4074 26 7 1.5339 -2.1002 1.2599 27 6 1.8420 -2.7840 -0.0031 28 1 -0.3633 -1.0207 0.1189 29 1 -0.3633 0.6134 0.8245 30 1 -0.3633 0.4074 -0.9435 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.4603 0.1162 2.4582 36 1 2.0058 0.9970 2.5584 37 1 0.2043 -0.9473 6.7189 38 1 0.7745 0.2240 7.9319 39 1 1.8521 -1.0801 7.3784 40 1 -0.8495 2.8053 5.5212 41 1 -0.6682 1.2287 4.7157 42 1 -0.9488 1.3035 6.4718 43 1 0.8980 5.5419 8.3966 44 1 2.0513 -2.6902 4.5548 45 1 0.4885 -2.3206 3.7791 46 1 1.7104 -3.8832 2.3574 47 1 3.1492 -2.8349 2.3850 48 1 2.9096 -2.7049 -0.2080 49 1 1.5641 -3.8351 0.0755 50 1 1.2809 -2.3195 -0.8140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337747602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:25 Heat of formation + Delta-G solvation = -80.143621 kcal Electronic energy + Delta-G solvation = -30063.865828 eV Core-core repulsion = 26252.525330 eV Total energy + Delta-G solvation = -3811.340498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65543 -38.52044 -38.07428 -36.98241 -36.46251 -35.30546 -34.53745 -31.80801 -30.91705 -28.93822 -27.90920 -27.26810 -26.99924 -25.41458 -24.76621 -22.70299 -22.32368 -20.18107 -19.71109 -19.00619 -18.95460 -18.17841 -17.50103 -16.92405 -16.44743 -16.19830 -15.98046 -15.76367 -15.39659 -15.31711 -14.85395 -14.79949 -14.58187 -14.18453 -14.13358 -13.87330 -13.77804 -13.56751 -13.52450 -13.35332 -13.19958 -13.18755 -13.01540 -12.87636 -12.80796 -12.71713 -12.53160 -12.32879 -12.13541 -11.98869 -11.94162 -11.73783 -11.53187 -11.46373 -11.36116 -11.30818 -10.76077 -10.11613 -9.74411 -9.25475 -8.30712 -6.35907 -0.47987 1.29739 1.38417 1.46758 1.91450 2.31397 2.44379 2.88509 3.04107 3.23177 3.58617 3.83648 3.91871 4.03010 4.12150 4.17930 4.28223 4.31646 4.39894 4.45698 4.52597 4.63115 4.65217 4.66156 4.68408 4.72524 4.74986 4.82061 4.86887 4.87330 4.87848 5.01892 5.03872 5.07478 5.10616 5.12277 5.21279 5.25895 5.26983 5.42172 5.46784 5.55982 5.58482 5.60477 5.88805 6.05767 6.13395 6.32817 6.67806 7.28653 8.85977 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004921 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.445734 B = 5688.775913 C = 6812.652371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.157 4.157 4 C 0.083 3.917 5 H 0.028 0.972 6 C 0.120 3.880 7 N -1.004 6.004 8 S 2.788 3.212 9 O -1.012 7.012 10 O -1.004 7.004 11 N -0.992 5.992 12 C 0.092 3.908 13 C 0.244 3.756 14 H 0.041 0.959 15 C -0.153 4.153 16 C -0.528 4.528 17 H 0.040 0.960 18 C 0.016 3.984 19 N -0.944 5.944 20 Si 0.939 3.061 21 H -0.252 1.252 22 H -0.299 1.299 23 H -0.246 1.246 24 C 0.117 3.883 25 C 0.045 3.955 26 N -0.532 5.532 27 C 0.022 3.978 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.267 0.733 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.116 0.884 47 H 0.024 0.976 48 H 0.020 0.980 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -16.250 -19.784 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.215 4.215 4 C -0.028 4.028 5 H 0.046 0.954 6 C -0.005 4.005 7 N -0.845 5.845 8 S 2.800 3.200 9 O -0.996 6.996 10 O -0.988 6.988 11 N -0.832 5.832 12 C -0.053 4.053 13 C 0.138 3.862 14 H 0.059 0.941 15 C -0.212 4.212 16 C -0.567 4.567 17 H 0.058 0.942 18 C -0.182 4.182 19 N -0.584 5.584 20 Si 0.765 3.235 21 H -0.177 1.177 22 H -0.226 1.226 23 H -0.170 1.170 24 C -0.007 4.007 25 C -0.084 4.084 26 N -0.257 5.257 27 C -0.125 4.125 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.466 -16.031 -19.487 25.626 hybrid contribution 0.716 0.989 0.244 1.245 sum -3.751 -15.042 -19.243 24.711 Atomic orbital electron populations 1.21791 0.93468 1.02872 1.01495 1.21162 0.97583 0.95405 0.96088 1.21968 1.00878 0.96167 1.02496 1.21939 0.96097 0.89632 0.95108 0.95431 1.21812 1.01881 0.93649 0.83158 1.58128 1.76328 1.18629 1.31419 1.01439 0.73761 0.71968 0.72866 1.93524 1.73490 1.52174 1.80377 1.93490 1.72468 1.58107 1.74741 1.57419 1.60522 1.21798 1.43463 1.21488 0.99774 0.93269 0.90783 1.18815 0.92494 0.78760 0.96120 0.94095 1.22330 0.96555 1.00363 1.01948 1.21456 1.37466 0.96749 1.01059 0.94190 1.25778 0.96534 0.97622 0.98272 1.70031 1.48754 1.10644 1.28978 0.86013 0.79873 0.76734 0.80856 1.17727 1.22649 1.17003 1.21678 1.02443 0.77865 0.98760 1.22421 0.97114 0.98865 0.90017 1.61917 1.59140 1.01168 1.03439 1.22494 0.98957 0.99857 0.91217 0.91020 0.93369 0.92089 0.89429 0.93244 0.90737 0.93342 0.89068 0.90583 0.90336 0.91570 0.91212 0.94101 0.91217 0.91579 0.92382 0.88930 0.88770 0.86623 0.95767 0.96120 0.89903 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.40 71.98 0.60 -1.54 16 2 C -0.08 -1.41 2.21 -10.79 -0.02 -1.44 16 3 C -0.16 -2.99 8.83 71.98 0.64 -2.35 16 4 C 0.08 1.77 1.81 44.99 0.08 1.85 16 5 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 6 C 0.12 3.15 5.18 86.35 0.45 3.60 16 7 N -1.00 -28.46 3.39 -512.98 -1.74 -30.20 16 8 S 2.79 107.50 6.16 -56.49 -0.35 107.15 16 9 O -1.01 -46.78 15.31 -128.00 -1.96 -48.74 16 10 O -1.00 -40.67 15.34 -128.00 -1.96 -42.63 16 11 N -0.99 -39.69 3.12 -520.47 -1.62 -41.31 16 12 C 0.09 3.15 9.65 127.77 1.23 4.38 16 13 C 0.24 11.20 2.21 44.24 0.10 11.29 16 14 H 0.04 2.00 5.97 -2.39 -0.01 1.99 16 15 C -0.15 -5.84 8.67 71.98 0.62 -5.21 16 16 C -0.53 -29.93 8.57 25.60 0.22 -29.71 16 17 H 0.04 2.52 7.58 -2.91 -0.02 2.50 16 18 C 0.02 0.93 5.45 84.65 0.46 1.39 16 19 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 20 Si 0.94 43.65 24.37 68.60 1.67 45.32 16 21 H -0.25 -10.66 6.87 99.48 0.68 -9.98 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.25 -10.63 6.53 99.48 0.65 -9.98 16 24 C 0.12 2.50 6.64 86.20 0.57 3.07 16 25 C 0.05 0.81 5.60 86.23 0.48 1.29 16 26 N -0.53 -9.31 3.85 -897.06 -3.46 -12.77 16 27 C 0.02 0.28 8.67 127.69 1.11 1.39 16 28 H 0.07 1.09 6.96 -2.39 -0.02 1.07 16 29 H 0.05 0.84 6.68 -2.39 -0.02 0.82 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.25 6.53 -2.39 -0.02 1.23 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 35 H 0.09 2.14 6.32 -2.39 -0.02 2.12 16 36 H 0.08 2.32 5.60 -2.39 -0.01 2.31 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.54 7.02 -2.39 -0.02 2.52 16 39 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 40 H 0.04 1.62 3.27 -2.39 -0.01 1.61 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.41 7.67 -2.39 -0.02 2.39 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.09 2.02 6.93 -2.39 -0.02 2.00 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.12 1.41 7.98 -2.39 -0.02 1.39 16 47 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.02 0.28 8.11 -2.39 -0.02 0.26 16 49 H 0.08 0.81 7.95 -2.39 -0.02 0.79 16 50 H 0.08 0.91 6.21 -2.38 -0.01 0.89 16 Total: -1.00 -73.37 375.70 -1.74 -75.11 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.84 Total: 18.52 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 6.54 Total: -11.98 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -6.52 Total: -142.76 kcal Atomic # 8 Polarization: -87.44 SS G_CDS: -3.92 Total: -91.36 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Atomic # 16 Polarization: 107.50 SS G_CDS: -0.35 Total: 107.15 kcal Total: -73.37 -1.74 -75.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337747602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.033 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds