Wall clock time and date at job start Tue Mar 31 2020 17:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46505 * 120.00361 * 269.99978 * 17 14 12 19 19 C 1.46499 * 120.00071 * 90.00311 * 17 14 12 20 20 C 1.53006 * 109.47359 * 94.99602 * 19 17 14 21 21 C 1.53000 * 109.47100 * 179.97438 * 20 19 17 22 22 N 1.46900 * 109.46800 * 179.97438 * 21 20 19 23 23 C 1.48532 * 111.00087 * 52.61205 * 22 21 20 24 24 C 1.54932 * 103.22959 * 159.71574 * 23 22 21 25 25 C 1.54597 * 102.92282 * 322.58578 * 24 23 22 26 26 C 1.47911 * 110.99865 * 170.00322 * 22 21 20 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 1.08998 * 109.46822 * 89.99730 * 18 17 14 35 35 H 1.08993 * 109.47446 * 210.00297 * 18 17 14 36 36 H 1.09002 * 109.46576 * 330.00606 * 18 17 14 37 37 H 1.09000 * 109.47331 * 215.00066 * 19 17 14 38 38 H 1.08998 * 109.47007 * 334.99816 * 19 17 14 39 39 H 1.08992 * 109.47289 * 300.00226 * 20 19 17 40 40 H 1.09001 * 109.46404 * 60.00023 * 20 19 17 41 41 H 1.08992 * 109.47507 * 300.00427 * 21 20 19 42 42 H 1.09007 * 109.46705 * 60.00361 * 21 20 19 43 43 H 1.09002 * 110.66189 * 278.15299 * 23 22 21 44 44 H 1.09000 * 110.66746 * 41.27757 * 23 22 21 45 45 H 1.09002 * 110.72812 * 204.22591 * 24 23 22 46 46 H 1.09005 * 110.72169 * 80.94506 * 24 23 22 47 47 H 1.09003 * 110.30742 * 263.03845 * 25 24 23 48 48 H 1.08996 * 110.30725 * 140.87044 * 25 24 23 49 49 H 1.09002 * 109.91426 * 333.51118 * 26 22 21 50 50 H 1.09001 * 109.91339 * 94.60241 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1725 0.8458 -0.8968 19 6 5.3068 -1.2472 -2.3250 20 6 6.1144 -0.8177 -3.5515 21 6 6.9119 -2.0115 -4.0806 22 7 7.6868 -1.5992 -5.2585 23 6 8.5036 -0.3943 -4.9634 24 6 9.5948 -0.4276 -6.0627 25 6 9.8977 -1.9371 -6.2035 26 6 8.6484 -2.6509 -5.6550 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 5.0124 0.5165 0.1298 35 1 6.2422 0.8952 -1.1000 36 1 4.7305 1.8326 -1.0349 37 1 5.9852 -1.6037 -1.5499 38 1 4.6209 -2.0472 -2.6035 39 1 5.4361 -0.4613 -4.3266 40 1 6.8003 -0.0177 -3.2729 41 1 7.5903 -2.3676 -3.3054 42 1 6.2262 -2.8118 -4.3590 43 1 7.9001 0.5095 -5.0476 44 1 8.9529 -0.4672 -3.9730 45 1 10.4833 0.1157 -5.7410 46 1 9.2115 -0.0221 -6.9991 47 1 10.7751 -2.2034 -5.6140 48 1 10.0520 -2.1959 -7.2510 49 1 8.9164 -3.2549 -4.7881 50 1 8.2096 -3.2834 -6.4267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337750604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:00 Heat of formation + Delta-G solvation = -71.742237 kcal Electronic energy + Delta-G solvation = -28460.760113 eV Core-core repulsion = 24649.783927 eV Total energy + Delta-G solvation = -3810.976187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.23719 -36.79072 -36.48087 -36.11431 -35.20240 -33.42212 -32.60351 -30.14333 -29.09393 -29.05887 -26.41024 -25.50120 -25.18510 -24.13431 -22.21992 -21.03877 -20.70511 -20.46481 -18.35136 -17.21056 -16.83072 -16.47998 -16.27654 -16.17891 -15.55963 -15.04901 -14.80711 -14.35317 -14.14862 -13.83805 -13.44266 -13.36082 -13.08856 -13.00429 -12.73005 -12.61982 -12.25617 -12.02830 -11.96022 -11.73153 -11.68267 -11.58583 -11.50250 -11.36888 -11.34374 -11.22515 -11.20518 -10.99669 -10.95115 -10.88435 -10.84141 -10.54965 -10.44170 -10.21522 -10.06740 -9.31496 -8.71305 -8.59885 -8.49480 -7.94077 -6.10656 -4.19301 1.24328 3.23416 3.29784 3.30184 3.45655 3.77795 4.12033 4.33631 4.38916 4.44718 4.68253 4.86197 4.89583 5.01930 5.05237 5.18148 5.19604 5.24624 5.28254 5.43747 5.50720 5.54408 5.56167 5.58373 5.60072 5.69946 5.73141 5.80370 5.90814 5.92921 6.02422 6.18485 6.24961 6.25930 6.29268 6.41538 6.65233 6.68772 6.81326 6.87186 6.88318 6.96013 7.12388 7.50850 7.61790 7.77709 8.04551 8.25431 8.83626 9.46821 10.94253 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003010 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.530101 B = 9299.632258 C = 9885.838187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.993 6.993 16 O -0.980 6.980 17 N -1.009 6.009 18 C 0.089 3.911 19 C 0.132 3.868 20 C -0.141 4.141 21 C 0.051 3.949 22 N -0.518 5.518 23 C 0.032 3.968 24 C -0.125 4.125 25 C -0.131 4.131 26 C 0.034 3.966 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.916 -5.368 -11.584 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.834 5.834 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.977 6.977 16 O -0.964 6.964 17 N -0.847 5.847 18 C -0.056 4.056 19 C 0.005 3.995 20 C -0.181 4.181 21 C -0.078 4.078 22 N -0.242 5.242 23 C -0.096 4.096 24 C -0.163 4.163 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.155 -4.641 -12.584 19.500 hybrid contribution 1.015 -0.958 2.028 2.462 sum 15.170 -5.599 -10.556 19.310 Atomic orbital electron populations 1.22056 0.98013 0.99644 1.00736 1.18711 0.91865 0.92691 0.80246 0.92442 1.21335 1.31904 1.13100 0.90167 0.92019 1.24927 0.94977 0.94975 0.98945 1.69874 1.36125 1.22546 1.23902 0.86596 0.79095 0.79690 0.82176 1.21259 1.20305 1.20316 1.57791 1.64360 1.21349 1.39855 1.21176 0.98873 0.82103 1.01733 1.01966 0.72448 0.73444 0.73209 1.93540 1.85956 1.76234 1.41989 1.93561 1.83704 1.32347 1.86837 1.57906 1.30683 1.35599 1.60495 1.21500 0.98067 0.92663 0.93395 1.21072 0.95643 0.87748 0.95019 1.22127 0.99537 0.97925 0.98466 1.22243 0.96753 0.98200 0.90626 1.64805 1.22103 1.04066 1.33229 1.23265 0.94319 0.94850 0.97133 1.22495 0.98231 0.96038 0.99560 1.22395 0.97348 0.95599 1.01599 1.22880 0.92037 0.94486 0.99963 0.88919 0.96912 0.94893 0.92576 0.93905 0.93387 0.90266 0.91763 0.91924 0.90315 0.90834 0.90412 0.90207 0.91549 0.94575 0.90167 0.89781 0.93689 0.91167 0.90705 0.91656 0.91062 0.93813 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.14 16 2 C 0.27 6.54 2.62 -69.09 -0.18 6.36 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -13.31 7.99 -34.44 -0.28 -13.58 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.11 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.99 -20.80 3.12 -115.85 -0.36 -21.16 16 13 C 0.11 1.94 9.28 59.85 0.56 2.49 16 14 S 2.78 55.84 6.01 -107.50 -0.65 55.19 16 15 O -0.99 -20.49 16.18 -57.17 -0.93 -21.41 16 16 O -0.98 -22.70 15.30 -57.17 -0.88 -23.57 16 17 N -1.01 -16.54 3.24 -121.75 -0.39 -16.94 16 18 C 0.09 1.36 10.68 59.85 0.64 2.00 16 19 C 0.13 1.77 5.32 -4.04 -0.02 1.74 16 20 C -0.14 -1.74 5.20 -26.73 -0.14 -1.88 16 21 C 0.05 0.54 5.03 -3.82 -0.02 0.52 16 22 N -0.52 -5.54 5.40 -230.45 -1.24 -6.79 16 23 C 0.03 0.30 5.10 -1.90 -0.01 0.29 16 24 C -0.13 -0.97 7.06 -24.87 -0.18 -1.15 16 25 C -0.13 -0.96 6.93 -25.38 -0.18 -1.14 16 26 C 0.03 0.30 6.70 -2.75 -0.02 0.28 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.74 7.44 -51.92 -0.39 0.35 16 33 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.08 1.28 7.02 -51.93 -0.36 0.92 16 37 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 0.76 6.80 -51.93 -0.35 0.41 16 41 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16 42 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.08 0.83 7.67 -51.93 -0.40 0.44 16 44 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.04 0.36 7.57 -51.93 -0.39 -0.03 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -30.47 398.09 -11.54 -42.01 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.12 Total: 0.68 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.42 Total: -5.62 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -1.37 Total: -68.38 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.80 Total: -44.98 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.65 Total: 55.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.47 -11.54 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.730 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds