Wall clock time and date at job start Tue Mar 31 2020 17:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46505 * 120.00361 * 269.99978 * 17 14 12 19 19 C 1.46499 * 120.00071 * 90.00311 * 17 14 12 20 20 C 1.53006 * 109.47359 * 94.99602 * 19 17 14 21 21 C 1.53000 * 109.47100 * 179.97438 * 20 19 17 22 22 N 1.46900 * 109.46800 * 179.97438 * 21 20 19 23 23 C 1.48532 * 111.00087 * 52.61205 * 22 21 20 24 24 C 1.54932 * 103.22959 * 159.71574 * 23 22 21 25 25 C 1.54597 * 102.92282 * 322.58578 * 24 23 22 26 26 C 1.47911 * 110.99865 * 170.00322 * 22 21 20 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 1.08998 * 109.46822 * 89.99730 * 18 17 14 35 35 H 1.08993 * 109.47446 * 210.00297 * 18 17 14 36 36 H 1.09002 * 109.46576 * 330.00606 * 18 17 14 37 37 H 1.09000 * 109.47331 * 215.00066 * 19 17 14 38 38 H 1.08998 * 109.47007 * 334.99816 * 19 17 14 39 39 H 1.08992 * 109.47289 * 300.00226 * 20 19 17 40 40 H 1.09001 * 109.46404 * 60.00023 * 20 19 17 41 41 H 1.08992 * 109.47507 * 300.00427 * 21 20 19 42 42 H 1.09007 * 109.46705 * 60.00361 * 21 20 19 43 43 H 1.09002 * 110.66189 * 278.15299 * 23 22 21 44 44 H 1.09000 * 110.66746 * 41.27757 * 23 22 21 45 45 H 1.09002 * 110.72812 * 204.22591 * 24 23 22 46 46 H 1.09005 * 110.72169 * 80.94506 * 24 23 22 47 47 H 1.09003 * 110.30742 * 263.03845 * 25 24 23 48 48 H 1.08996 * 110.30725 * 140.87044 * 25 24 23 49 49 H 1.09002 * 109.91426 * 333.51118 * 26 22 21 50 50 H 1.09001 * 109.91339 * 94.60241 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1725 0.8458 -0.8968 19 6 5.3068 -1.2472 -2.3250 20 6 6.1144 -0.8177 -3.5515 21 6 6.9119 -2.0115 -4.0806 22 7 7.6868 -1.5992 -5.2585 23 6 8.5036 -0.3943 -4.9634 24 6 9.5948 -0.4276 -6.0627 25 6 9.8977 -1.9371 -6.2035 26 6 8.6484 -2.6509 -5.6550 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 5.0124 0.5165 0.1298 35 1 6.2422 0.8952 -1.1000 36 1 4.7305 1.8326 -1.0349 37 1 5.9852 -1.6037 -1.5499 38 1 4.6209 -2.0472 -2.6035 39 1 5.4361 -0.4613 -4.3266 40 1 6.8003 -0.0177 -3.2729 41 1 7.5903 -2.3676 -3.3054 42 1 6.2262 -2.8118 -4.3590 43 1 7.9001 0.5095 -5.0476 44 1 8.9529 -0.4672 -3.9730 45 1 10.4833 0.1157 -5.7410 46 1 9.2115 -0.0221 -6.9991 47 1 10.7751 -2.2034 -5.6140 48 1 10.0520 -2.1959 -7.2510 49 1 8.9164 -3.2549 -4.7881 50 1 8.2096 -3.2834 -6.4267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337750604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:59 Heat of formation + Delta-G solvation = -92.540149 kcal Electronic energy + Delta-G solvation = -28461.661978 eV Core-core repulsion = 24649.783927 eV Total energy + Delta-G solvation = -3811.878052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.96930 -38.41168 -37.88261 -37.69281 -36.88741 -34.49806 -34.31398 -31.03574 -30.92904 -29.74847 -27.52089 -27.25478 -27.00222 -25.17256 -23.13399 -22.55673 -21.68955 -21.26569 -19.86451 -18.72886 -18.46022 -18.28608 -17.44286 -16.98069 -16.83827 -16.45633 -15.98353 -15.55236 -15.34748 -15.06564 -14.96404 -14.69002 -14.47818 -14.11534 -13.85668 -13.72754 -13.64868 -13.45429 -13.42565 -13.18060 -13.14594 -12.97984 -12.80602 -12.73040 -12.67276 -12.57610 -12.36095 -12.23694 -12.20727 -12.12971 -12.06195 -11.95323 -11.87513 -11.56378 -11.38864 -11.18703 -10.48109 -10.02930 -9.63876 -9.34296 -8.07533 -6.22734 -0.33052 1.47841 1.48481 1.55977 1.97913 2.46226 2.54539 3.05008 3.20626 3.37364 3.71949 3.75221 3.81342 4.06291 4.08671 4.14029 4.27474 4.32906 4.37719 4.48660 4.56872 4.63552 4.67064 4.71855 4.73543 4.77876 4.80186 4.88149 4.94503 4.95811 4.98604 4.99791 5.02421 5.08298 5.14698 5.18534 5.24670 5.25480 5.28432 5.33711 5.55475 5.62663 5.76633 5.88321 5.98336 6.10861 6.12727 6.29760 6.86148 7.46865 8.96935 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003010 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.530101 B = 9299.632258 C = 9885.838187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.528 4.528 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.291 1.291 10 H -0.271 1.271 11 H -0.269 1.269 12 N -0.999 5.999 13 C 0.101 3.899 14 S 2.789 3.211 15 O -1.001 7.001 16 O -1.017 7.017 17 N -1.004 6.004 18 C 0.088 3.912 19 C 0.125 3.875 20 C -0.134 4.134 21 C 0.055 3.945 22 N -0.539 5.539 23 C 0.029 3.971 24 C -0.123 4.123 25 C -0.128 4.128 26 C 0.032 3.968 27 H 0.070 0.930 28 H 0.016 0.984 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.191 -7.239 -11.506 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.567 4.567 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.216 1.216 10 H -0.196 1.196 11 H -0.194 1.194 12 N -0.840 5.840 13 C -0.045 4.045 14 S 2.799 3.201 15 O -0.984 6.984 16 O -1.002 7.002 17 N -0.845 5.845 18 C -0.057 4.057 19 C 0.000 4.000 20 C -0.173 4.173 21 C -0.074 4.074 22 N -0.264 5.264 23 C -0.099 4.099 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.096 4.096 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.430 -6.538 -12.532 21.673 hybrid contribution 0.340 -0.375 1.923 1.989 sum 16.770 -6.913 -10.609 21.013 Atomic orbital electron populations 1.21956 0.98095 1.00015 0.99858 1.18386 0.91818 0.91375 0.81508 0.95859 1.21558 1.31592 1.13067 0.90495 0.91274 1.25696 0.95187 0.95587 1.01832 1.70018 1.37372 1.23987 1.24368 0.85593 0.78828 0.78627 0.78427 1.21644 1.19568 1.19429 1.57710 1.65200 1.22452 1.38652 1.21379 1.00344 0.80568 1.02178 1.01497 0.73184 0.72471 0.72953 1.93522 1.86502 1.76118 1.42308 1.93509 1.84708 1.34701 1.87253 1.57653 1.29390 1.36795 1.60618 1.21584 1.00121 0.91423 0.92570 1.21369 0.95902 0.86583 0.96195 1.22028 0.99155 0.98969 0.97164 1.22168 0.96853 0.97162 0.91192 1.64778 1.23173 1.05089 1.33362 1.23291 0.94535 0.94011 0.98053 1.22499 0.98211 0.96688 0.98757 1.22400 0.97062 0.94888 1.02235 1.22938 0.92228 0.94210 1.00232 0.91089 0.96498 0.93768 0.92751 0.93201 0.90731 0.90430 0.92736 0.87968 0.92062 0.88087 0.90328 0.92968 0.90684 0.92989 0.90457 0.90893 0.93114 0.89728 0.91271 0.90459 0.90356 0.93166 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.97 71.98 0.65 -6.15 16 2 C 0.27 13.51 2.62 44.24 0.12 13.63 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -26.53 7.99 25.60 0.20 -26.32 16 5 H 0.07 3.31 7.33 -2.91 -0.02 3.29 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.96 40.68 29.54 68.60 2.03 42.71 16 9 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 N -1.00 -41.63 3.12 -520.45 -1.62 -43.25 16 13 C 0.10 3.48 9.28 127.77 1.19 4.67 16 14 S 2.79 112.14 6.01 -56.49 -0.34 111.80 16 15 O -1.00 -40.85 16.18 -128.00 -2.07 -42.92 16 16 O -1.02 -48.48 15.30 -128.00 -1.96 -50.44 16 17 N -1.00 -31.86 3.24 -539.12 -1.75 -33.60 16 18 C 0.09 2.60 10.68 127.77 1.36 3.96 16 19 C 0.13 3.07 5.32 86.38 0.46 3.53 16 20 C -0.13 -3.08 5.20 30.60 0.16 -2.92 16 21 C 0.06 1.07 5.03 86.30 0.43 1.50 16 22 N -0.54 -10.69 5.40 -883.01 -4.77 -15.45 16 23 C 0.03 0.50 5.10 86.65 0.44 0.94 16 24 C -0.12 -1.69 7.06 31.80 0.22 -1.46 16 25 C -0.13 -1.57 6.93 31.47 0.22 -1.35 16 26 C 0.03 0.49 6.70 86.44 0.58 1.07 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.04 1.98 7.67 -2.39 -0.02 1.97 16 30 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.15 7.44 -2.38 -0.02 2.13 16 33 H 0.08 2.70 7.02 -2.39 -0.02 2.68 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 2.17 8.07 -2.39 -0.02 2.16 16 36 H 0.06 2.02 7.02 -2.39 -0.02 2.01 16 37 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 38 H 0.08 1.93 7.26 -2.39 -0.02 1.91 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.58 6.80 -2.39 -0.02 1.56 16 41 H 0.05 0.84 7.81 -2.39 -0.02 0.83 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 44 H 0.05 0.81 8.00 -2.39 -0.02 0.79 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 0.70 7.57 -2.39 -0.02 0.69 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.54 398.09 -2.87 -68.41 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.89 Total: 20.80 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.48 Total: -7.60 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -7.89 Total: -142.76 kcal Atomic # 8 Polarization: -89.33 SS G_CDS: -4.03 Total: -93.36 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 112.14 SS G_CDS: -0.34 Total: 111.80 kcal Total: -65.54 -2.87 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.134 kcal (2) G-P(sol) polarization free energy of solvation -65.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds