Wall clock time and date at job start Tue Mar 31 2020 17:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 C 1.50698 * 109.46993 * 239.99791 * 2 1 3 5 5 H 1.07999 * 119.99988 * 274.11458 * 4 2 1 6 6 C 1.37876 * 120.00192 * 94.11548 * 4 2 1 7 7 N 1.31519 * 119.99817 * 353.83352 * 6 4 2 8 8 Si 1.86802 * 120.00068 * 173.83495 * 6 4 2 9 9 H 1.48494 * 109.47284 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.46649 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47068 * 299.99655 * 8 6 4 12 12 N 1.46501 * 109.46943 * 119.99851 * 2 1 3 13 13 C 1.46506 * 120.00028 * 60.00006 * 12 2 1 14 14 S 1.65601 * 120.00268 * 239.99879 * 12 2 1 15 15 O 1.42098 * 106.40531 * 203.54459 * 14 12 2 16 16 O 1.42105 * 106.39783 * 336.46040 * 14 12 2 17 17 N 1.65599 * 107.21730 * 89.99757 * 14 12 2 18 18 C 1.46927 * 120.63287 * 269.72243 * 17 14 12 19 19 C 1.52761 * 109.00790 * 233.58567 * 18 17 14 20 20 C 1.53042 * 109.38464 * 305.58915 * 19 18 17 21 21 C 1.52997 * 109.45878 * 181.26288 * 20 19 18 22 22 N 1.46899 * 109.47384 * 65.13118 * 21 20 19 23 23 C 1.46907 * 110.99772 * 76.18298 * 22 21 20 24 24 C 1.46902 * 111.00084 * 200.13617 * 22 21 20 25 25 C 1.53044 * 109.53697 * 61.23852 * 20 19 18 26 26 C 1.46924 * 120.62702 * 90.00611 * 17 14 12 27 27 H 1.09004 * 109.47185 * 54.69126 * 1 2 3 28 28 H 1.08997 * 109.47417 * 174.69086 * 1 2 3 29 29 H 1.09007 * 109.47119 * 294.69414 * 1 2 3 30 30 H 0.97004 * 119.99772 * 4.75205 * 7 6 4 31 31 H 1.09000 * 109.46994 * 90.00074 * 13 12 2 32 32 H 1.09004 * 109.47036 * 209.99786 * 13 12 2 33 33 H 1.08999 * 109.46668 * 329.99897 * 13 12 2 34 34 H 1.09002 * 109.58526 * 353.41795 * 18 17 14 35 35 H 1.08998 * 109.58573 * 113.84641 * 18 17 14 36 36 H 1.09002 * 109.56032 * 185.54946 * 19 18 17 37 37 H 1.08996 * 109.36052 * 65.50030 * 19 18 17 38 38 H 1.09004 * 109.44507 * 301.22510 * 20 19 18 39 39 H 1.08997 * 109.46909 * 185.13354 * 21 20 19 40 40 H 1.09001 * 109.47009 * 305.12677 * 21 20 19 41 41 H 1.08996 * 109.47065 * 59.99877 * 23 22 21 42 42 H 1.09003 * 109.46530 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47081 * 299.99735 * 23 22 21 44 44 H 1.08994 * 109.47014 * 64.89142 * 24 22 21 45 45 H 1.08993 * 109.47071 * 184.89186 * 24 22 21 46 46 H 1.09000 * 109.46934 * 304.89005 * 24 22 21 47 47 H 1.08997 * 109.49490 * 178.68472 * 25 20 19 48 48 H 1.08998 * 109.51918 * 58.60357 * 25 20 19 49 49 H 1.09004 * 109.58463 * 246.15176 * 26 17 14 50 50 H 1.08995 * 109.58844 * 6.43626 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1490 -1.7841 -1.2242 6 6 2.3429 0.0102 -2.3641 7 7 2.0874 1.2993 -2.4144 8 14 3.1265 -0.8445 -3.8287 9 1 2.2212 -1.9140 -4.3203 10 1 3.3586 0.1438 -4.9125 11 1 4.4220 -1.4427 -3.4177 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9606 0.8091 3.3998 18 6 1.4422 2.1684 3.1946 19 6 1.7577 3.0127 4.4280 20 6 1.2126 2.3133 5.6754 21 6 1.4999 3.1726 6.9082 22 7 0.7498 4.4320 6.8129 23 6 -0.6707 4.2235 7.1240 24 6 1.3342 5.4601 7.6845 25 6 1.8897 0.9501 5.8348 26 6 1.5712 0.0803 4.6147 27 1 -0.3634 0.5940 -0.8387 28 1 -0.3634 -1.0232 -0.0951 29 1 -0.3634 0.4294 0.9337 30 1 1.7447 1.7567 -1.6306 31 1 2.4156 -2.7377 0.9718 32 1 1.6237 -2.2852 2.5003 33 1 0.6903 -2.3001 0.9847 34 1 1.9161 2.6120 2.3189 35 1 0.3627 2.1296 3.0482 36 1 1.2922 3.9932 4.3279 37 1 2.8375 3.1297 4.5192 38 1 0.1363 2.1744 5.5724 39 1 1.1942 2.6345 7.8054 40 1 2.5671 3.3883 6.9599 41 1 -0.7674 3.8349 8.1377 42 1 -1.2026 5.1718 7.0464 43 1 -1.0960 3.5092 6.4189 44 1 2.3360 5.7073 7.3335 45 1 0.7103 6.3535 7.6613 46 1 1.3897 5.0821 8.7054 47 1 1.5181 0.4626 6.7361 48 1 2.9683 1.0861 5.9131 49 1 0.5025 -0.1323 4.5864 50 1 2.1283 -0.8546 4.6743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337776751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:36 Heat of formation + Delta-G solvation = -76.914116 kcal Electronic energy + Delta-G solvation = -29079.548767 eV Core-core repulsion = 25268.348311 eV Total energy + Delta-G solvation = -3811.200456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.13935 -37.03963 -36.71328 -36.26758 -35.16191 -32.83469 -32.63734 -31.01812 -29.19881 -27.87332 -27.47058 -25.64331 -24.68906 -23.74511 -23.20205 -21.43431 -20.89096 -20.11374 -18.42488 -17.52548 -16.83685 -16.71184 -15.74182 -15.65552 -15.42348 -15.11912 -14.54600 -14.41012 -13.91772 -13.78321 -13.63722 -13.62233 -13.36394 -13.19767 -12.98093 -12.68669 -12.53264 -12.10104 -11.96594 -11.93527 -11.89227 -11.79811 -11.50746 -11.41999 -11.38450 -11.31141 -11.09462 -11.08891 -10.78260 -10.75231 -10.63042 -10.40630 -10.27800 -10.14230 -10.01076 -8.94792 -8.81972 -8.60027 -8.45573 -7.82104 -6.42054 -4.13208 1.19034 3.41966 3.46333 3.50083 3.64615 3.67376 4.09533 4.50875 4.56596 4.71314 4.76294 4.87390 4.94042 5.03942 5.16005 5.19678 5.24488 5.30199 5.31604 5.35222 5.43449 5.46199 5.53435 5.59189 5.59440 5.65580 5.76293 5.76606 5.90086 5.95930 6.04589 6.07508 6.15923 6.28071 6.37615 6.39322 6.45198 6.47770 6.58824 6.70799 6.75534 6.77010 6.85051 7.09206 7.34965 7.69493 8.08965 8.40452 8.79474 9.56972 10.96057 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.003275 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.463014 B = 8548.050994 C = 9009.583355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.247 3.753 3 H 0.063 0.937 4 C -0.595 4.595 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.898 5.898 8 Si 1.069 2.931 9 H -0.287 1.287 10 H -0.281 1.281 11 H -0.287 1.287 12 N -0.987 5.987 13 C 0.111 3.889 14 S 2.769 3.231 15 O -0.997 6.997 16 O -0.972 6.972 17 N -1.011 6.011 18 C 0.119 3.881 19 C -0.116 4.116 20 C -0.079 4.079 21 C 0.059 3.941 22 N -0.545 5.545 23 C 0.023 3.977 24 C 0.025 3.975 25 C -0.126 4.126 26 C 0.123 3.877 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.271 0.729 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.022 0.978 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.022 0.978 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 3.005 19.841 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.144 3.856 3 H 0.081 0.919 4 C -0.636 4.636 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.534 5.534 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.206 1.206 11 H -0.213 1.213 12 N -0.829 5.829 13 C -0.036 4.036 14 S 2.781 3.219 15 O -0.981 6.981 16 O -0.955 6.955 17 N -0.849 5.849 18 C -0.006 4.006 19 C -0.155 4.155 20 C -0.098 4.098 21 C -0.069 4.069 22 N -0.269 5.269 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.166 4.166 26 C -0.003 4.003 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.041 0.959 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.377 3.490 17.813 18.671 hybrid contribution -1.063 -0.633 2.517 2.804 sum -5.440 2.856 20.329 21.237 Atomic orbital electron populations 1.22170 0.99025 1.00438 0.98577 1.18898 0.90430 0.93767 0.82488 0.91935 1.22100 1.48194 0.95406 0.97881 0.92530 1.25881 0.94741 0.96097 1.01512 1.70815 1.41098 1.09656 1.31818 0.83556 0.76376 0.75058 0.75378 1.21378 1.20634 1.21297 1.58116 1.70049 1.19542 1.35155 1.21100 1.01260 0.82541 0.98668 1.02410 0.74036 0.73132 0.72342 1.93504 1.69356 1.60503 1.74714 1.93589 1.73902 1.55887 1.72159 1.58439 1.67853 1.24423 1.34218 1.21322 0.99181 0.81079 0.99035 1.21735 1.01338 0.99086 0.93367 1.21082 1.00336 0.93749 0.94595 1.22234 0.98372 0.89480 0.96835 1.61916 1.02735 1.08614 1.53593 1.22433 0.88978 1.02052 0.99025 1.22386 1.00650 0.95115 0.94193 1.21895 1.01402 0.95619 0.97686 1.21288 1.00279 0.94888 0.83831 0.92719 0.93675 0.96005 0.91711 0.93272 0.93447 0.91453 0.88974 0.91916 0.89702 0.92007 0.90985 0.94661 0.90891 0.95915 0.91515 0.91089 0.91278 0.91485 0.95902 0.91247 0.91418 0.91940 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.04 37.16 0.34 -2.67 16 2 C 0.25 5.98 2.46 -69.08 -0.17 5.81 16 3 H 0.06 1.67 5.26 -51.93 -0.27 1.40 16 4 C -0.60 -16.24 8.27 -34.44 -0.28 -16.52 16 5 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 6 C 0.02 0.68 5.45 -17.82 -0.10 0.58 16 7 N -0.90 -26.66 13.63 55.43 0.76 -25.90 16 8 Si 1.07 25.14 29.91 -169.99 -5.08 20.05 16 9 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.99 -21.01 3.12 -115.85 -0.36 -21.37 16 13 C 0.11 2.02 9.38 59.85 0.56 2.58 16 14 S 2.77 57.20 6.10 -107.50 -0.66 56.55 16 15 O -1.00 -21.58 15.80 -57.17 -0.90 -22.48 16 16 O -0.97 -23.82 15.28 -57.17 -0.87 -24.69 16 17 N -1.01 -15.92 3.35 -113.77 -0.38 -16.30 16 18 C 0.12 1.74 6.45 -3.93 -0.03 1.71 16 19 C -0.12 -1.41 5.25 -26.83 -0.14 -1.56 16 20 C -0.08 -0.80 2.21 -90.58 -0.20 -1.00 16 21 C 0.06 0.53 4.39 -3.83 -0.02 0.51 16 22 N -0.55 -4.91 4.38 -251.26 -1.10 -6.01 16 23 C 0.02 0.18 9.39 60.07 0.56 0.75 16 24 C 0.02 0.19 9.52 60.07 0.57 0.76 16 25 C -0.13 -1.32 5.36 -26.61 -0.14 -1.47 16 26 C 0.12 1.55 6.48 -3.71 -0.02 1.52 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.91 6.89 -51.93 -0.36 0.55 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.27 7.98 6.59 -40.82 -0.27 7.71 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 33 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 34 H 0.09 1.54 6.91 -51.93 -0.36 1.18 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.72 6.80 -51.93 -0.35 0.36 16 39 H 0.04 0.30 7.95 -51.93 -0.41 -0.12 16 40 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 41 H 0.02 0.16 8.08 -51.93 -0.42 -0.26 16 42 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 43 H 0.07 0.56 6.82 -51.93 -0.35 0.20 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 46 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 1.15 6.92 -51.93 -0.36 0.79 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -33.18 393.68 -10.70 -43.89 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.96 Total: -0.68 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 0.93 Total: -8.99 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.09 Total: -69.58 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.78 Total: -47.17 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -0.66 Total: 56.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.18 -10.70 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.026 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds