Wall clock time and date at job start Tue Mar 31 2020 17:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 C 1.50698 * 109.46993 * 239.99791 * 2 1 3 5 5 H 1.07999 * 119.99988 * 274.11458 * 4 2 1 6 6 C 1.37876 * 120.00192 * 94.11548 * 4 2 1 7 7 N 1.31519 * 119.99817 * 353.83352 * 6 4 2 8 8 Si 1.86802 * 120.00068 * 173.83495 * 6 4 2 9 9 H 1.48494 * 109.47284 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.46649 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47068 * 299.99655 * 8 6 4 12 12 N 1.46501 * 109.46943 * 119.99851 * 2 1 3 13 13 C 1.46506 * 120.00028 * 60.00006 * 12 2 1 14 14 S 1.65601 * 120.00268 * 239.99879 * 12 2 1 15 15 O 1.42098 * 106.40531 * 203.54459 * 14 12 2 16 16 O 1.42105 * 106.39783 * 336.46040 * 14 12 2 17 17 N 1.65599 * 107.21730 * 89.99757 * 14 12 2 18 18 C 1.46927 * 120.63287 * 269.72243 * 17 14 12 19 19 C 1.52761 * 109.00790 * 233.58567 * 18 17 14 20 20 C 1.53042 * 109.38464 * 305.58915 * 19 18 17 21 21 C 1.52997 * 109.45878 * 181.26288 * 20 19 18 22 22 N 1.46899 * 109.47384 * 65.13118 * 21 20 19 23 23 C 1.46907 * 110.99772 * 76.18298 * 22 21 20 24 24 C 1.46902 * 111.00084 * 200.13617 * 22 21 20 25 25 C 1.53044 * 109.53697 * 61.23852 * 20 19 18 26 26 C 1.46924 * 120.62702 * 90.00611 * 17 14 12 27 27 H 1.09004 * 109.47185 * 54.69126 * 1 2 3 28 28 H 1.08997 * 109.47417 * 174.69086 * 1 2 3 29 29 H 1.09007 * 109.47119 * 294.69414 * 1 2 3 30 30 H 0.97004 * 119.99772 * 4.75205 * 7 6 4 31 31 H 1.09000 * 109.46994 * 90.00074 * 13 12 2 32 32 H 1.09004 * 109.47036 * 209.99786 * 13 12 2 33 33 H 1.08999 * 109.46668 * 329.99897 * 13 12 2 34 34 H 1.09002 * 109.58526 * 353.41795 * 18 17 14 35 35 H 1.08998 * 109.58573 * 113.84641 * 18 17 14 36 36 H 1.09002 * 109.56032 * 185.54946 * 19 18 17 37 37 H 1.08996 * 109.36052 * 65.50030 * 19 18 17 38 38 H 1.09004 * 109.44507 * 301.22510 * 20 19 18 39 39 H 1.08997 * 109.46909 * 185.13354 * 21 20 19 40 40 H 1.09001 * 109.47009 * 305.12677 * 21 20 19 41 41 H 1.08996 * 109.47065 * 59.99877 * 23 22 21 42 42 H 1.09003 * 109.46530 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47081 * 299.99735 * 23 22 21 44 44 H 1.08994 * 109.47014 * 64.89142 * 24 22 21 45 45 H 1.08993 * 109.47071 * 184.89186 * 24 22 21 46 46 H 1.09000 * 109.46934 * 304.89005 * 24 22 21 47 47 H 1.08997 * 109.49490 * 178.68472 * 25 20 19 48 48 H 1.08998 * 109.51918 * 58.60357 * 25 20 19 49 49 H 1.09004 * 109.58463 * 246.15176 * 26 17 14 50 50 H 1.08995 * 109.58844 * 6.43626 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1490 -1.7841 -1.2242 6 6 2.3429 0.0102 -2.3641 7 7 2.0874 1.2993 -2.4144 8 14 3.1265 -0.8445 -3.8287 9 1 2.2212 -1.9140 -4.3203 10 1 3.3586 0.1438 -4.9125 11 1 4.4220 -1.4427 -3.4177 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9606 0.8091 3.3998 18 6 1.4422 2.1684 3.1946 19 6 1.7577 3.0127 4.4280 20 6 1.2126 2.3133 5.6754 21 6 1.4999 3.1726 6.9082 22 7 0.7498 4.4320 6.8129 23 6 -0.6707 4.2235 7.1240 24 6 1.3342 5.4601 7.6845 25 6 1.8897 0.9501 5.8348 26 6 1.5712 0.0803 4.6147 27 1 -0.3634 0.5940 -0.8387 28 1 -0.3634 -1.0232 -0.0951 29 1 -0.3634 0.4294 0.9337 30 1 1.7447 1.7567 -1.6306 31 1 2.4156 -2.7377 0.9718 32 1 1.6237 -2.2852 2.5003 33 1 0.6903 -2.3001 0.9847 34 1 1.9161 2.6120 2.3189 35 1 0.3627 2.1296 3.0482 36 1 1.2922 3.9932 4.3279 37 1 2.8375 3.1297 4.5192 38 1 0.1363 2.1744 5.5724 39 1 1.1942 2.6345 7.8054 40 1 2.5671 3.3883 6.9599 41 1 -0.7674 3.8349 8.1377 42 1 -1.2026 5.1718 7.0464 43 1 -1.0960 3.5092 6.4189 44 1 2.3360 5.7073 7.3335 45 1 0.7103 6.3535 7.6613 46 1 1.3897 5.0821 8.7054 47 1 1.5181 0.4626 6.7361 48 1 2.9683 1.0861 5.9131 49 1 0.5025 -0.1323 4.5864 50 1 2.1283 -0.8546 4.6743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337776751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:35 Heat of formation + Delta-G solvation = -100.409470 kcal Electronic energy + Delta-G solvation = -29080.567602 eV Core-core repulsion = 25268.348311 eV Total energy + Delta-G solvation = -3812.219291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04537 -38.47376 -38.05204 -37.85475 -36.92953 -34.63141 -33.81635 -32.05248 -30.99666 -28.45360 -28.31163 -27.22708 -26.73975 -24.62137 -24.24800 -22.78702 -22.20872 -21.08602 -19.94522 -19.10104 -18.55151 -18.50253 -17.12787 -16.41756 -16.17845 -16.02108 -15.87834 -15.63183 -15.56881 -15.25319 -15.18443 -14.88368 -14.67203 -14.37229 -14.23840 -13.71486 -13.67075 -13.50836 -13.28461 -13.25580 -13.09582 -13.04346 -12.90852 -12.82404 -12.77171 -12.58140 -12.54176 -12.43538 -12.25622 -12.13508 -12.03056 -11.87690 -11.65764 -11.33881 -11.26318 -10.85518 -10.56482 -10.02338 -9.60214 -9.22619 -8.60825 -6.32907 -0.42040 1.52659 1.61005 1.79302 1.99073 2.49566 2.57817 3.04105 3.20585 3.31521 3.68845 3.75837 3.97156 4.02602 4.19809 4.22211 4.33654 4.39582 4.42555 4.48484 4.52442 4.55978 4.61230 4.66533 4.73336 4.77828 4.79073 4.79932 4.84525 4.87319 4.89962 4.94458 5.02916 5.03895 5.04680 5.07591 5.10611 5.20884 5.33264 5.36604 5.49630 5.51941 5.67597 5.93748 6.08113 6.13749 6.15781 6.26682 6.61310 7.45362 8.77085 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.003275 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.463014 B = 8548.050994 C = 9009.583355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.249 3.751 3 H 0.031 0.969 4 C -0.607 4.607 5 H 0.055 0.945 6 C -0.029 4.029 7 N -0.929 5.929 8 Si 1.108 2.892 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.995 5.995 13 C 0.104 3.896 14 S 2.782 3.218 15 O -1.009 7.009 16 O -1.019 7.019 17 N -1.001 6.001 18 C 0.116 3.884 19 C -0.109 4.109 20 C -0.072 4.072 21 C 0.063 3.937 22 N -0.562 5.562 23 C 0.024 3.976 24 C 0.025 3.975 25 C -0.123 4.123 26 C 0.113 3.887 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.101 0.899 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 1.939 22.063 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.145 3.855 3 H 0.049 0.951 4 C -0.647 4.647 5 H 0.074 0.926 6 C -0.229 4.229 7 N -0.567 5.567 8 Si 0.930 3.070 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.837 5.837 13 C -0.042 4.042 14 S 2.794 3.206 15 O -0.993 6.993 16 O -1.003 7.003 17 N -0.843 5.843 18 C -0.009 4.009 19 C -0.148 4.148 20 C -0.091 4.091 21 C -0.065 4.065 22 N -0.286 5.286 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.162 4.162 26 C -0.011 4.011 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.119 0.881 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.986 2.389 20.042 21.053 hybrid contribution -0.575 -0.301 1.991 2.094 sum -6.561 2.088 22.033 23.084 Atomic orbital electron populations 1.21956 0.96463 1.01061 0.99364 1.18674 0.92216 0.92034 0.82612 0.95102 1.22478 1.47564 0.95526 0.99157 0.92644 1.27182 0.94976 0.96148 1.04558 1.70920 1.43539 1.10661 1.31557 0.83054 0.76334 0.74819 0.72763 1.18703 1.20969 1.20623 1.57872 1.69982 1.20954 1.34867 1.21322 1.01464 0.80466 1.00901 1.01658 0.74185 0.72355 0.72405 1.93478 1.70126 1.60961 1.74741 1.93529 1.75588 1.57450 1.73756 1.58044 1.67311 1.24793 1.34129 1.21441 0.99801 0.80483 0.99139 1.21675 1.00585 0.99123 0.93444 1.21032 1.00682 0.93515 0.93836 1.22143 0.98163 0.89585 0.96577 1.61904 1.03474 1.08782 1.54435 1.22445 0.88202 1.02401 0.99351 1.22390 1.00529 0.95087 0.94265 1.21901 1.00910 0.95606 0.97831 1.21662 1.01840 0.94779 0.82822 0.94539 0.92507 0.93054 0.92992 0.94441 0.90185 0.90158 0.92042 0.89961 0.89198 0.93516 0.89881 0.93367 0.91471 0.95252 0.91060 0.91131 0.91699 0.90804 0.95264 0.88105 0.92618 0.89196 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.04 71.98 0.65 -4.69 16 2 C 0.25 12.20 2.46 44.24 0.11 12.31 16 3 H 0.03 1.73 5.26 -2.39 -0.01 1.72 16 4 C -0.61 -33.52 8.27 25.60 0.21 -33.31 16 5 H 0.06 2.99 7.42 -2.91 -0.02 2.97 16 6 C -0.03 -1.65 5.45 84.65 0.46 -1.19 16 7 N -0.93 -57.00 13.63 21.45 0.29 -56.71 16 8 Si 1.11 50.98 29.91 68.60 2.05 53.04 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -1.00 -41.98 3.12 -520.44 -1.62 -43.61 16 13 C 0.10 3.60 9.38 127.77 1.20 4.80 16 14 S 2.78 115.45 6.10 -56.49 -0.34 115.11 16 15 O -1.01 -43.23 15.80 -128.00 -2.02 -45.25 16 16 O -1.02 -52.12 15.28 -128.00 -1.96 -54.07 16 17 N -1.00 -30.37 3.35 -513.85 -1.72 -32.10 16 18 C 0.12 3.32 6.45 86.22 0.56 3.87 16 19 C -0.11 -2.54 5.25 30.53 0.16 -2.38 16 20 C -0.07 -1.26 2.21 -10.77 -0.02 -1.28 16 21 C 0.06 0.98 4.39 86.30 0.38 1.36 16 22 N -0.56 -8.86 4.38 -948.86 -4.16 -13.02 16 23 C 0.02 0.31 9.39 127.69 1.20 1.51 16 24 C 0.03 0.34 9.52 127.69 1.22 1.55 16 25 C -0.12 -2.20 5.36 30.67 0.16 -2.04 16 26 C 0.11 2.52 6.48 86.36 0.56 3.08 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.26 16.01 6.59 -92.71 -0.61 15.40 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 2.22 7.79 -2.39 -0.02 2.21 16 33 H 0.08 2.56 6.54 -2.39 -0.02 2.54 16 34 H 0.06 2.14 6.91 -2.39 -0.02 2.13 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.02 7.72 -2.39 -0.02 2.00 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.33 6.80 -2.38 -0.02 1.32 16 39 H 0.05 0.64 7.95 -2.39 -0.02 0.62 16 40 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 41 H 0.03 0.33 8.08 -2.39 -0.02 0.32 16 42 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 43 H 0.07 0.90 6.82 -2.39 -0.02 0.88 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.86 8.04 -2.39 -0.02 0.84 16 46 H 0.03 0.35 8.13 -2.39 -0.02 0.33 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.08 1.98 6.92 -2.39 -0.02 1.96 16 Total: -1.00 -73.80 393.68 -1.59 -75.40 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.05 Total: 17.63 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 6.84 Total: -16.41 kcal Atomic # 7 Polarization: -138.21 SS G_CDS: -7.21 Total: -145.43 kcal Atomic # 8 Polarization: -95.35 SS G_CDS: -3.98 Total: -99.33 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.04 kcal Atomic # 16 Polarization: 115.45 SS G_CDS: -0.34 Total: 115.11 kcal Total: -73.80 -1.59 -75.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.012 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds