Wall clock time and date at job start Tue Mar 31 2020 17:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65596 * 107.21909 * 90.00126 * 14 12 2 18 18 C 1.46926 * 120.63186 * 269.72093 * 17 14 12 19 19 C 1.53630 * 108.54292 * 126.36677 * 18 17 14 20 20 C 1.53037 * 109.24300 * 54.85458 * 19 18 17 21 21 C 1.52995 * 109.46109 * 178.48885 * 20 19 18 22 22 N 1.46902 * 109.47313 * 295.07425 * 21 20 19 23 23 C 1.46902 * 111.00273 * 170.00013 * 22 21 20 24 24 C 1.46903 * 110.99973 * 293.94853 * 22 21 20 25 25 C 1.53039 * 109.54319 * 298.51359 * 20 19 18 26 26 C 1.46930 * 120.63307 * 89.99751 * 17 14 12 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 32 32 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 33 33 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 34 34 H 1.09000 * 109.58721 * 246.19890 * 18 17 14 35 35 H 1.08997 * 109.58360 * 6.62868 * 18 17 14 36 36 H 1.09000 * 109.63303 * 294.86184 * 19 18 17 37 37 H 1.09000 * 109.43098 * 174.72609 * 19 18 17 38 38 H 1.09009 * 109.44343 * 58.52934 * 20 19 18 39 39 H 1.09007 * 109.47041 * 55.07173 * 21 20 19 40 40 H 1.09002 * 109.47554 * 175.07164 * 21 20 19 41 41 H 1.09007 * 109.47215 * 59.99578 * 23 22 21 42 42 H 1.08998 * 109.47298 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.46782 * 299.99914 * 23 22 21 44 44 H 1.09005 * 109.46861 * 60.00182 * 24 22 21 45 45 H 1.08993 * 109.47522 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47283 * 300.00709 * 24 22 21 47 47 H 1.08999 * 109.49578 * 301.41536 * 25 20 19 48 48 H 1.08992 * 109.52628 * 181.32817 * 25 20 19 49 49 H 1.09003 * 109.58135 * 353.37419 * 26 17 14 50 50 H 1.08993 * 109.58613 * 113.65669 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1899 0.8433 -0.8998 19 6 5.7727 0.0563 0.2839 20 6 6.7022 -1.0377 -0.2465 21 6 7.3147 -1.8005 0.9297 22 7 8.1769 -0.8972 1.7036 23 6 8.5934 -1.5207 2.9668 24 6 9.3426 -0.4775 0.9143 25 6 5.9049 -2.0065 -1.1228 26 6 5.3219 -1.2459 -2.3180 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7091 1.1614 3.4844 31 1 0.7375 -2.1444 -1.9994 32 1 2.4628 -2.5819 -1.9865 33 1 1.5295 -2.5969 -0.4708 34 1 5.9894 1.3699 -1.4211 35 1 4.4535 1.5601 -0.5367 36 1 4.9635 -0.3991 0.8548 37 1 6.3362 0.7325 0.9267 38 1 7.4971 -0.5831 -0.8380 39 1 6.5188 -2.1806 1.5703 40 1 7.9073 -2.6343 0.5531 41 1 9.1465 -2.4359 2.7553 42 1 9.2302 -0.8305 3.5201 43 1 7.7121 -1.7583 3.5626 44 1 9.0059 0.0433 0.0179 45 1 9.9637 0.1908 1.5106 46 1 9.9228 -1.3548 0.6284 47 1 5.0944 -2.4424 -0.5387 48 1 6.5621 -2.7986 -1.4812 49 1 4.6725 -1.9079 -2.8908 50 1 6.1303 -0.8864 -2.9545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337776753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:39 Heat of formation + Delta-G solvation = -73.290496 kcal Electronic energy + Delta-G solvation = -29959.904916 eV Core-core repulsion = 26148.861592 eV Total energy + Delta-G solvation = -3811.043324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.92613 -36.81617 -36.69997 -36.08187 -35.19703 -32.60274 -32.56623 -30.74511 -29.04273 -27.67441 -27.23330 -25.46974 -25.15786 -23.56217 -22.98747 -21.23921 -20.64992 -19.79415 -18.28892 -17.20688 -16.76426 -16.38049 -15.62988 -15.50900 -15.27897 -14.92967 -14.79586 -14.18286 -14.07267 -13.71138 -13.45146 -13.30338 -13.15092 -12.94497 -12.69177 -12.44493 -12.33814 -11.95373 -11.86678 -11.76845 -11.74461 -11.60784 -11.38214 -11.35387 -11.26622 -11.18274 -10.94947 -10.89437 -10.87721 -10.54186 -10.38373 -10.22864 -10.17696 -10.12113 -9.94354 -9.25363 -8.62361 -8.45779 -8.36205 -7.89960 -6.07497 -4.15232 1.27691 3.25370 3.32787 3.32952 3.51191 3.90598 4.16438 4.36698 4.81428 4.90325 4.91429 5.06723 5.09045 5.23349 5.23871 5.36626 5.38944 5.45688 5.46486 5.57714 5.64045 5.67803 5.71267 5.78851 5.82933 5.83435 5.93611 5.99665 6.08862 6.17859 6.20525 6.32570 6.37602 6.44055 6.64849 6.68359 6.87498 6.88413 6.91051 6.99768 7.01103 7.04433 7.15239 7.53882 7.65208 7.80641 8.07419 8.28693 8.87496 9.50689 10.97622 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.006402 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.171548 B = 4372.475668 C = 6492.910052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -1.000 7.000 16 O -0.980 6.980 17 N -1.005 6.005 18 C 0.128 3.872 19 C -0.123 4.123 20 C -0.078 4.078 21 C 0.060 3.940 22 N -0.543 5.543 23 C 0.025 3.975 24 C 0.023 3.977 25 C -0.129 4.129 26 C 0.129 3.871 27 H 0.092 0.908 28 H 0.011 0.989 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.021 0.979 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -5.596 -3.832 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.790 3.210 15 O -0.984 6.984 16 O -0.965 6.965 17 N -0.844 5.844 18 C 0.003 3.997 19 C -0.161 4.161 20 C -0.097 4.097 21 C -0.068 4.068 22 N -0.266 5.266 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.169 4.169 26 C 0.003 3.997 27 H 0.110 0.890 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.726 -4.544 -4.344 14.194 hybrid contribution 0.953 -1.508 1.164 2.130 sum 13.679 -6.052 -3.180 15.292 Atomic orbital electron populations 1.22056 0.98145 0.99572 1.00672 1.18703 0.91736 0.92674 0.80297 0.92501 1.21320 1.31605 1.12981 0.89996 0.91960 1.24888 0.94952 0.94938 0.98832 1.69874 1.36255 1.22636 1.23712 0.86608 0.78760 0.79898 0.82793 1.20420 1.21376 1.20086 1.57773 1.64441 1.21234 1.39779 1.21149 0.98744 0.82197 1.01674 1.01900 0.72468 0.73428 0.73175 1.93519 1.86084 1.76401 1.42399 1.93568 1.83781 1.32303 1.86802 1.58249 1.30212 1.35232 1.60718 1.21436 0.97766 0.90762 0.89759 1.21959 0.99355 0.97569 0.97260 1.21083 0.97333 0.96274 0.94968 1.22229 0.96125 0.93013 0.95437 1.61914 1.18185 1.41335 1.05194 1.22368 1.00697 0.97252 0.91983 1.22421 0.92050 0.99437 0.98607 1.21935 1.00126 0.97629 0.97191 1.21235 0.95930 0.87315 0.95246 0.88954 0.97010 0.94956 0.92700 0.94075 0.93454 0.90295 0.92417 0.89051 0.89696 0.90328 0.91524 0.90431 0.95266 0.96072 0.91562 0.91231 0.90982 0.91731 0.96125 0.90743 0.91700 0.89883 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -12.82 7.99 -34.44 -0.28 -13.10 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 16 8 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.99 -20.43 3.12 -115.84 -0.36 -20.79 16 13 C 0.11 1.94 9.28 59.85 0.56 2.49 16 14 S 2.78 55.63 6.06 -107.50 -0.65 54.98 16 15 O -1.00 -20.74 15.93 -57.17 -0.91 -21.65 16 16 O -0.98 -22.65 15.41 -57.17 -0.88 -23.54 16 17 N -1.01 -16.56 3.34 -113.27 -0.38 -16.94 16 18 C 0.13 2.03 6.41 -3.48 -0.02 2.01 16 19 C -0.12 -1.84 5.28 -26.38 -0.14 -1.98 16 20 C -0.08 -0.95 2.07 -90.58 -0.19 -1.14 16 21 C 0.06 0.71 4.35 -3.83 -0.02 0.69 16 22 N -0.54 -6.39 4.45 -251.25 -1.12 -7.50 16 23 C 0.03 0.26 9.57 60.07 0.57 0.84 16 24 C 0.02 0.23 9.33 60.07 0.56 0.79 16 25 C -0.13 -1.56 5.36 -26.61 -0.14 -1.70 16 26 C 0.13 1.72 6.37 -3.71 -0.02 1.70 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 33 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.66 7.12 -51.93 -0.37 1.29 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 38 H 0.07 0.76 6.34 -51.92 -0.33 0.43 16 39 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 40 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.07 0.69 6.37 -51.93 -0.33 0.36 16 45 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -29.72 392.97 -10.90 -40.62 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.07 Total: 1.87 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 0.94 Total: -4.63 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.23 Total: -68.58 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.79 Total: -45.19 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 55.63 SS G_CDS: -0.65 Total: 54.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.72 -10.90 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337776753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.669 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds