Wall clock time and date at job start Tue Mar 31 2020 17:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 N 1.46903 * 109.47120 * 179.97438 * 19 18 17 21 21 C 1.48002 * 110.99842 * 298.71484 * 20 19 18 22 22 C 1.50451 * 112.82619 * 191.34533 * 21 20 19 23 23 C 1.54312 * 108.49595 * 93.73172 * 22 21 20 24 24 C 1.45879 * 112.18535 * 281.46420 * 23 22 21 25 25 C 1.54308 * 112.18660 * 61.12028 * 24 23 22 26 26 C 1.48003 * 110.99825 * 170.00113 * 20 19 18 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 38 38 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 39 39 H 1.08996 * 108.81320 * 312.21258 * 21 20 19 40 40 H 1.09000 * 108.80906 * 70.48576 * 21 20 19 41 41 H 1.08997 * 109.63077 * 334.02622 * 22 21 20 42 42 H 1.08999 * 109.62767 * 213.43523 * 22 21 20 43 43 H 1.09003 * 108.93567 * 160.76712 * 23 22 21 44 44 H 1.08998 * 108.86801 * 42.11106 * 23 22 21 45 45 H 1.09011 * 108.93426 * 300.42575 * 24 23 22 46 46 H 1.08995 * 108.93921 * 181.82150 * 24 23 22 47 47 H 1.09000 * 109.63011 * 161.75614 * 25 24 23 48 48 H 1.09005 * 109.63083 * 41.16849 * 25 24 23 49 49 H 1.09000 * 108.80680 * 205.70364 * 26 20 19 50 50 H 1.09004 * 108.80828 * 324.07938 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 7 -0.2039 -0.0387 6.3218 21 6 -1.3631 -0.6045 5.5960 22 6 -2.3666 -1.2503 6.5122 23 6 -3.4497 -0.2089 6.8638 24 6 -3.0003 0.7294 7.8864 25 6 -1.7698 1.5419 7.4315 26 6 -0.5476 0.6759 7.5715 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 1.4406 1.2293 6.0017 38 1 -0.0075 1.6149 5.0412 39 1 -1.8557 0.1950 5.0428 40 1 -1.0038 -1.3501 4.8868 41 1 -1.8695 -1.5836 7.4231 42 1 -2.8263 -2.1015 6.0099 43 1 -4.3363 -0.7292 7.2262 44 1 -3.7096 0.3473 5.9632 45 1 -2.7434 0.1735 8.7883 46 1 -3.8133 1.4178 8.1168 47 1 -1.6644 2.4281 8.0572 48 1 -1.8914 1.8381 6.3895 49 1 -0.7246 -0.0574 8.3583 50 1 0.2951 1.3040 7.8603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337862222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:36 Heat of formation + Delta-G solvation = -78.254523 kcal Electronic energy + Delta-G solvation = -28527.201676 eV Core-core repulsion = 24715.943095 eV Total energy + Delta-G solvation = -3811.258580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.67815 -36.68339 -36.22888 -36.00296 -35.19121 -33.85844 -32.56636 -32.40442 -29.09209 -28.90011 -25.85049 -25.55674 -25.13315 -25.04968 -22.49982 -20.83994 -20.74134 -19.76292 -18.75678 -17.30689 -16.82240 -16.68080 -16.39023 -16.08848 -15.44284 -15.23401 -14.86360 -14.61329 -14.24887 -14.08706 -13.67639 -13.43958 -13.31968 -13.18630 -12.90460 -12.78463 -12.48815 -12.20340 -12.01400 -11.71608 -11.61857 -11.49847 -11.44191 -11.36022 -11.33542 -11.21061 -11.04728 -10.96255 -10.83104 -10.81969 -10.79793 -10.50154 -10.44494 -10.26046 -10.00460 -9.29744 -9.19968 -8.44471 -8.40033 -7.96129 -6.06531 -4.12755 1.23776 3.30055 3.36212 3.37009 3.40514 3.76814 4.17120 4.34466 4.41419 4.44023 4.58398 4.80996 4.82309 4.97651 5.00787 5.08599 5.10617 5.20316 5.25146 5.35141 5.38562 5.44139 5.52322 5.54917 5.68735 5.71085 5.75686 5.79623 5.83359 5.86677 5.96810 6.04191 6.04620 6.10611 6.15944 6.39145 6.63782 6.76709 6.79628 6.86013 6.93577 7.02214 7.17414 7.50171 7.64891 7.80093 8.05064 8.28831 8.89695 9.52999 10.99225 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003038 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.709060 B = 9212.923260 C = 9999.720087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.782 3.218 15 O -0.995 6.995 16 O -0.975 6.975 17 N -1.134 6.134 18 C 0.123 3.877 19 C 0.054 3.946 20 N -0.547 5.547 21 C 0.056 3.944 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.061 3.939 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.009 0.991 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -0.586 20.266 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.790 3.210 15 O -0.978 6.978 16 O -0.959 6.959 17 N -0.893 5.893 18 C -0.004 4.004 19 C -0.075 4.075 20 N -0.272 5.272 21 C -0.071 4.071 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.190 4.190 26 C -0.067 4.067 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.732 -1.019 20.251 21.701 hybrid contribution -0.768 0.712 -1.147 1.553 sum -8.500 -0.307 19.104 20.912 Atomic orbital electron populations 1.22111 0.98350 0.99655 1.00539 1.18717 0.91213 0.92993 0.80533 0.92385 1.21346 1.31472 1.12989 0.90047 0.91927 1.24912 0.94968 0.95034 0.99009 1.69861 1.36602 1.22798 1.23736 0.86495 0.78653 0.79980 0.82266 1.20564 1.19864 1.21217 1.57681 1.70039 1.19787 1.35763 1.21163 1.01697 0.82160 0.98737 1.01891 0.73584 0.73159 0.72368 1.93538 1.69065 1.60720 1.74514 1.93614 1.74340 1.56052 1.71890 1.56193 1.62702 1.17273 1.53140 1.21167 0.95115 0.93507 0.90633 1.22261 0.97106 0.94296 0.93853 1.61812 1.21965 1.37247 1.06218 1.21894 0.90445 0.98712 0.96038 1.21435 0.95863 0.97937 1.00607 1.20624 0.98525 0.97366 0.99551 1.20540 0.97756 0.98071 0.98989 1.21945 0.96108 0.98945 1.02029 1.21891 0.96561 0.96098 0.92124 0.88923 0.94781 0.97151 0.92739 0.93244 0.93335 0.91027 0.75733 0.91903 0.89832 0.90068 0.94258 0.94479 0.90461 0.90668 0.90945 0.92145 0.92208 0.92016 0.92462 0.91409 0.91658 0.90670 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.27 6.54 2.62 -69.09 -0.18 6.36 16 3 H 0.06 1.57 6.91 -51.92 -0.36 1.21 16 4 C -0.52 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.99 -20.43 3.12 -115.86 -0.36 -20.79 16 13 C 0.11 1.93 9.53 59.85 0.57 2.50 16 14 S 2.78 54.52 6.09 -107.50 -0.66 53.87 16 15 O -1.00 -20.83 16.68 -57.17 -0.95 -21.78 16 16 O -0.98 -22.78 16.70 -57.17 -0.95 -23.74 16 17 N -1.13 -16.59 6.05 -10.61 -0.06 -16.65 16 18 C 0.12 1.54 6.05 -4.04 -0.02 1.52 16 19 C 0.05 0.56 5.00 -3.82 -0.02 0.54 16 20 N -0.55 -5.27 4.72 -235.89 -1.11 -6.38 16 21 C 0.06 0.52 4.32 -4.49 -0.02 0.50 16 22 C -0.12 -0.93 5.63 -27.32 -0.15 -1.09 16 23 C -0.12 -0.88 5.30 -29.41 -0.16 -1.03 16 24 C -0.12 -0.78 5.30 -29.42 -0.16 -0.93 16 25 C -0.15 -1.10 5.60 -27.32 -0.15 -1.26 16 26 C 0.06 0.48 5.16 -4.49 -0.02 0.46 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.41 5.23 8.65 -34.47 -0.30 4.93 16 35 H 0.06 0.78 6.66 -51.93 -0.35 0.43 16 36 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 38 H 0.04 0.40 7.81 -51.93 -0.41 -0.01 16 39 H 0.04 0.36 6.44 -51.93 -0.33 0.03 16 40 H 0.08 0.75 6.91 -51.93 -0.36 0.39 16 41 H 0.07 0.59 7.08 -51.93 -0.37 0.23 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 45 H 0.06 0.39 7.52 -51.92 -0.39 0.00 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 49 H 0.07 0.57 6.59 -51.93 -0.34 0.23 16 50 H 0.07 0.52 7.64 -51.93 -0.40 0.12 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -31.81 386.43 -11.65 -43.46 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.62 Total: 2.24 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.37 Total: -8.07 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.91 Total: -67.99 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.91 Total: -45.52 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -0.66 Total: 53.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.81 -11.65 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337862222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds