Wall clock time and date at job start Tue Mar 31 2020 17:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 N 1.46903 * 109.47120 * 179.97438 * 19 18 17 21 21 C 1.48002 * 110.99842 * 298.71484 * 20 19 18 22 22 C 1.50451 * 112.82619 * 191.34533 * 21 20 19 23 23 C 1.54312 * 108.49595 * 93.73172 * 22 21 20 24 24 C 1.45879 * 112.18535 * 281.46420 * 23 22 21 25 25 C 1.54308 * 112.18660 * 61.12028 * 24 23 22 26 26 C 1.48003 * 110.99825 * 170.00113 * 20 19 18 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 38 38 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 39 39 H 1.08996 * 108.81320 * 312.21258 * 21 20 19 40 40 H 1.09000 * 108.80906 * 70.48576 * 21 20 19 41 41 H 1.08997 * 109.63077 * 334.02622 * 22 21 20 42 42 H 1.08999 * 109.62767 * 213.43523 * 22 21 20 43 43 H 1.09003 * 108.93567 * 160.76712 * 23 22 21 44 44 H 1.08998 * 108.86801 * 42.11106 * 23 22 21 45 45 H 1.09011 * 108.93426 * 300.42575 * 24 23 22 46 46 H 1.08995 * 108.93921 * 181.82150 * 24 23 22 47 47 H 1.09000 * 109.63011 * 161.75614 * 25 24 23 48 48 H 1.09005 * 109.63083 * 41.16849 * 25 24 23 49 49 H 1.09000 * 108.80680 * 205.70364 * 26 20 19 50 50 H 1.09004 * 108.80828 * 324.07938 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 7 -0.2039 -0.0387 6.3218 21 6 -1.3631 -0.6045 5.5960 22 6 -2.3666 -1.2503 6.5122 23 6 -3.4497 -0.2089 6.8638 24 6 -3.0003 0.7294 7.8864 25 6 -1.7698 1.5419 7.4315 26 6 -0.5476 0.6759 7.5715 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 1.4406 1.2293 6.0017 38 1 -0.0075 1.6149 5.0412 39 1 -1.8557 0.1950 5.0428 40 1 -1.0038 -1.3501 4.8868 41 1 -1.8695 -1.5836 7.4231 42 1 -2.8263 -2.1015 6.0099 43 1 -4.3363 -0.7292 7.2262 44 1 -3.7096 0.3473 5.9632 45 1 -2.7434 0.1735 8.7883 46 1 -3.8133 1.4178 8.1168 47 1 -1.6644 2.4281 8.0572 48 1 -1.8914 1.8381 6.3895 49 1 -0.7246 -0.0574 8.3583 50 1 0.2951 1.3040 7.8603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337862222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:35 Heat of formation + Delta-G solvation = -101.500574 kcal Electronic energy + Delta-G solvation = -28528.209700 eV Core-core repulsion = 24715.943095 eV Total energy + Delta-G solvation = -3812.266605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.34481 -38.33915 -37.90687 -37.04629 -36.88372 -34.75163 -34.51823 -33.02041 -30.91163 -29.77225 -27.28784 -27.00601 -26.57598 -25.71522 -23.38926 -22.58508 -21.37676 -20.56651 -20.16045 -18.83434 -18.56871 -18.15115 -17.54414 -17.04302 -16.87834 -16.41900 -16.11042 -15.69833 -15.34655 -15.16390 -14.80004 -14.74105 -14.56422 -14.34202 -13.92764 -13.73853 -13.65150 -13.43737 -13.36544 -13.18645 -13.13195 -13.12764 -12.98711 -12.81326 -12.60594 -12.58276 -12.34772 -12.20857 -12.13406 -12.08158 -11.86848 -11.71816 -11.49493 -11.40260 -11.14576 -11.06775 -10.51478 -10.42936 -9.67162 -9.13002 -8.11647 -6.24857 -0.32406 1.42311 1.44530 1.53445 2.01520 2.43410 2.61076 2.95380 3.16801 3.45372 3.75243 3.85026 3.90504 4.02267 4.07126 4.19292 4.22886 4.35863 4.47081 4.48408 4.59357 4.60174 4.68621 4.77065 4.82526 4.83917 4.86960 4.97377 5.00060 5.01762 5.06411 5.09563 5.14367 5.19276 5.19477 5.25606 5.30218 5.36317 5.43192 5.49896 5.61843 5.71076 5.87984 6.03034 6.12804 6.21360 6.24315 6.31041 6.82773 7.44049 8.92521 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003038 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.709060 B = 9212.923260 C = 9999.720087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.279 1.279 12 N -0.996 5.996 13 C 0.103 3.897 14 S 2.798 3.202 15 O -1.008 7.008 16 O -1.017 7.017 17 N -1.118 6.118 18 C 0.119 3.881 19 C 0.060 3.940 20 N -0.554 5.554 21 C 0.055 3.945 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.148 4.148 26 C 0.060 3.940 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.421 0.579 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 -1.291 21.683 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.209 1.209 10 H -0.191 1.191 11 H -0.204 1.204 12 N -0.838 5.838 13 C -0.043 4.043 14 S 2.807 3.193 15 O -0.992 6.992 16 O -1.001 7.001 17 N -0.882 5.882 18 C -0.007 4.007 19 C -0.070 4.070 20 N -0.279 5.279 21 C -0.072 4.072 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.186 4.186 26 C -0.067 4.067 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.705 -1.736 21.683 23.429 hybrid contribution -0.469 0.932 -1.488 1.818 sum -9.175 -0.804 20.195 22.196 Atomic orbital electron populations 1.21896 0.96775 1.00246 1.00399 1.18396 0.92267 0.91307 0.81140 0.95745 1.21666 1.31584 1.13034 0.91520 0.92580 1.25629 0.95216 0.95739 1.01626 1.69973 1.37274 1.23721 1.24322 0.85614 0.77933 0.79217 0.79211 1.20907 1.19104 1.20385 1.57557 1.70002 1.21031 1.35228 1.21359 1.01752 0.80384 1.00774 1.01153 0.73542 0.72318 0.72270 1.93516 1.69814 1.61251 1.74579 1.93553 1.75856 1.57430 1.73299 1.55713 1.62301 1.18055 1.52097 1.21348 0.94794 0.93500 0.91079 1.22169 0.97533 0.93977 0.93276 1.61812 1.22195 1.37441 1.06492 1.21921 0.90604 0.98371 0.96316 1.21412 0.95630 0.98154 1.00285 1.20605 0.98650 0.97267 0.99328 1.20536 0.97635 0.98066 0.99035 1.21904 0.96096 0.99270 1.01377 1.21946 0.97060 0.96341 0.91325 0.91570 0.93728 0.94687 0.92651 0.94066 0.90306 0.90249 0.74389 0.91347 0.90237 0.89352 0.93928 0.95183 0.91085 0.90646 0.90418 0.91286 0.93103 0.91338 0.91977 0.90484 0.92999 0.90096 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.95 71.98 0.64 -5.27 16 2 C 0.27 13.40 2.62 44.24 0.12 13.51 16 3 H 0.02 1.37 6.91 -2.38 -0.02 1.35 16 4 C -0.54 -29.28 8.37 25.60 0.21 -29.06 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 6 C 0.02 0.97 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -1.00 -40.70 3.12 -520.46 -1.62 -42.33 16 13 C 0.10 3.52 9.53 127.77 1.22 4.73 16 14 S 2.80 108.93 6.09 -56.49 -0.34 108.58 16 15 O -1.01 -41.44 16.68 -128.00 -2.14 -43.58 16 16 O -1.02 -48.38 16.70 -128.00 -2.14 -50.51 16 17 N -1.12 -31.45 6.05 -187.47 -1.14 -32.58 16 18 C 0.12 2.79 6.05 86.38 0.52 3.31 16 19 C 0.06 1.13 5.00 86.30 0.43 1.56 16 20 N -0.55 -9.64 4.72 -900.23 -4.24 -13.89 16 21 C 0.05 0.93 4.32 85.27 0.37 1.30 16 22 C -0.12 -1.60 5.63 30.21 0.17 -1.43 16 23 C -0.12 -1.50 5.30 28.86 0.15 -1.35 16 24 C -0.12 -1.31 5.30 28.85 0.15 -1.16 16 25 C -0.15 -1.87 5.60 30.21 0.17 -1.71 16 26 C 0.06 0.84 5.16 85.26 0.44 1.28 16 27 H 0.07 3.31 6.07 -2.39 -0.01 3.30 16 28 H 0.04 1.83 6.66 -2.39 -0.02 1.81 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 2.19 7.79 -2.38 -0.02 2.17 16 33 H 0.08 2.57 6.43 -2.39 -0.02 2.56 16 34 H 0.42 10.27 8.65 -96.74 -0.84 9.43 16 35 H 0.07 1.55 6.66 -2.38 -0.02 1.54 16 36 H 0.08 1.97 7.75 -2.38 -0.02 1.95 16 37 H 0.09 1.54 7.80 -2.39 -0.02 1.52 16 38 H 0.04 0.78 7.81 -2.38 -0.02 0.77 16 39 H 0.03 0.55 6.44 -2.39 -0.02 0.54 16 40 H 0.07 1.27 6.91 -2.39 -0.02 1.26 16 41 H 0.07 1.04 7.08 -2.39 -0.02 1.02 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.73 7.51 -2.39 -0.02 0.71 16 45 H 0.07 0.70 7.52 -2.38 -0.02 0.68 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.81 6.74 -2.38 -0.02 0.80 16 49 H 0.08 1.05 6.59 -2.39 -0.02 1.03 16 50 H 0.07 0.95 7.64 -2.38 -0.02 0.93 16 Total: -1.00 -67.77 386.43 -4.22 -71.99 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.09 Total: 20.79 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.05 Total: -12.87 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -6.76 Total: -139.88 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -4.27 Total: -94.09 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 108.93 SS G_CDS: -0.34 Total: 108.58 kcal Total: -67.77 -4.22 -71.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337862222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.515 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds