Wall clock time and date at job start Tue Mar 31 2020 17:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47387 * 2 1 4 4 C 1.46851 * 111.00192 * 51.77239 * 3 2 1 5 5 C 1.53039 * 109.52769 * 185.84083 * 4 3 2 6 6 C 1.53118 * 109.27693 * 300.82685 * 5 4 3 7 7 C 1.53116 * 109.16607 * 57.65247 * 6 5 4 8 8 C 1.46849 * 111.00608 * 175.98814 * 3 2 1 9 9 H 1.09005 * 109.45842 * 294.16403 * 8 3 2 10 10 C 1.52994 * 109.46145 * 54.13986 * 8 3 2 11 11 N 1.46503 * 109.47282 * 54.49897 * 10 8 3 12 12 S 1.65593 * 120.00292 * 163.67385 * 11 10 8 13 13 O 1.42101 * 106.40348 * 178.53936 * 12 11 10 14 14 O 1.42104 * 106.40132 * 311.45888 * 12 11 10 15 15 N 1.65597 * 107.21818 * 64.99862 * 12 11 10 16 16 C 1.46497 * 120.00035 * 90.00354 * 15 12 11 17 17 C 1.46504 * 119.99979 * 269.99695 * 15 12 11 18 18 H 1.09001 * 109.47018 * 0.02562 * 17 15 12 19 19 C 1.52997 * 109.47318 * 239.99823 * 17 15 12 20 20 C 1.50704 * 109.46894 * 120.00292 * 17 15 12 21 21 H 1.08007 * 120.00158 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00067 * 180.02562 * 20 17 15 23 23 N 1.31511 * 119.99878 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99937 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.47033 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47125 * 120.00459 * 24 22 20 27 27 H 1.48506 * 109.46781 * 240.00012 * 24 22 20 28 28 H 1.09004 * 109.47076 * 299.99758 * 1 2 3 29 29 H 1.08999 * 109.46939 * 60.00087 * 1 2 3 30 30 H 1.09000 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47262 * 239.99535 * 2 1 3 32 32 H 1.09008 * 109.47261 * 119.99431 * 2 1 3 33 33 H 1.08996 * 109.46388 * 305.86570 * 4 3 2 34 34 H 1.09004 * 109.45547 * 65.83612 * 4 3 2 35 35 H 1.09005 * 109.49857 * 60.76437 * 5 4 3 36 36 H 1.08997 * 109.50220 * 180.84225 * 5 4 3 37 37 H 1.09001 * 109.52253 * 177.55671 * 6 5 4 38 38 H 1.09001 * 109.52004 * 297.74279 * 6 5 4 39 39 H 1.08996 * 109.50571 * 182.40769 * 7 6 5 40 40 H 1.08997 * 109.50250 * 62.28153 * 7 6 5 41 41 H 1.09000 * 109.47335 * 174.49587 * 10 8 3 42 42 H 1.09004 * 109.47707 * 294.49591 * 10 8 3 43 43 H 0.97002 * 119.99628 * 343.66794 * 11 10 8 44 44 H 1.08996 * 109.47754 * 90.00091 * 16 15 12 45 45 H 1.09008 * 109.47121 * 209.99655 * 16 15 12 46 46 H 1.09001 * 109.47197 * 329.99551 * 16 15 12 47 47 H 1.09001 * 109.47774 * 300.00392 * 19 17 15 48 48 H 1.09000 * 109.46786 * 60.00737 * 19 17 15 49 49 H 1.08996 * 109.47298 * 179.97438 * 19 17 15 50 50 H 0.97005 * 120.00108 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3954 2.1639 1.0770 5 6 1.8158 3.6306 0.9573 6 6 3.3410 3.7284 1.0494 7 6 3.9672 2.8699 -0.0530 8 6 3.4845 1.4253 0.0959 9 1 3.7958 1.0367 1.0656 10 6 4.0920 0.5676 -1.0158 11 7 3.5697 1.0068 -2.3122 12 16 4.3328 0.5518 -3.7096 13 8 3.5742 1.1011 -4.7783 14 8 5.7148 0.8218 -3.5183 15 7 4.1905 -1.0935 -3.8325 16 6 3.0410 -1.6795 -4.5264 17 6 5.2141 -1.9630 -3.2473 18 1 5.9843 -1.3518 -2.7768 19 6 5.8439 -2.8208 -4.3467 20 6 4.5816 -2.8577 -2.2126 21 1 3.5228 -2.7860 -2.0113 22 6 5.3544 -3.7676 -1.5229 23 7 6.6436 -3.8545 -1.7676 24 14 4.5704 -4.8761 -0.2399 25 1 3.1174 -4.5820 -0.1530 26 1 4.7663 -6.2964 -0.6265 27 1 5.2045 -4.6305 1.0804 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 0.3109 2.0893 0.9975 34 1 1.7166 1.7717 2.0419 35 1 1.4829 4.0274 -0.0018 36 1 1.3641 4.2057 1.7656 37 1 3.6479 4.7664 0.9212 38 1 3.6710 3.3677 2.0236 39 1 5.0533 2.9014 0.0339 40 1 3.6682 3.2547 -1.0280 41 1 5.1766 0.6748 -1.0060 42 1 3.8288 -0.4777 -0.8534 43 1 2.7767 1.5641 -2.3519 44 1 3.2791 -1.8041 -5.5827 45 1 2.8092 -2.6508 -4.0893 46 1 2.1795 -1.0197 -4.4235 47 1 5.0735 -3.4319 -4.8169 48 1 6.3014 -2.1737 -5.0950 49 1 6.6058 -3.4673 -3.9114 50 1 7.1874 -4.4945 -1.2821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337968748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:15 Heat of formation + Delta-G solvation = -80.590597 kcal Electronic energy + Delta-G solvation = -29888.688505 eV Core-core repulsion = 26077.328625 eV Total energy + Delta-G solvation = -3811.359880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.56709 -36.59424 -36.09110 -35.13815 -34.76505 -34.32414 -32.60192 -30.69473 -29.58185 -29.05542 -25.85691 -25.44876 -25.19217 -24.56971 -21.66319 -21.08854 -20.72596 -19.59012 -18.66906 -17.09632 -16.79200 -16.45587 -16.21277 -15.34567 -15.14517 -14.90231 -14.76343 -14.33429 -14.05881 -13.91313 -13.49842 -13.43927 -13.26256 -13.13670 -12.68189 -12.37650 -11.98749 -11.95078 -11.72796 -11.70311 -11.63467 -11.52480 -11.39205 -11.34484 -11.19523 -11.15648 -10.97651 -10.93834 -10.88916 -10.67355 -10.41003 -10.27767 -10.21839 -10.17927 -10.05209 -9.31009 -8.85663 -8.51391 -8.25943 -7.92177 -6.12281 -4.20690 1.38334 3.19405 3.29045 3.29954 3.62170 3.90402 4.28216 4.31648 4.72345 4.75821 4.85914 5.05876 5.11777 5.18256 5.23519 5.27078 5.33186 5.41501 5.51918 5.56118 5.61724 5.69188 5.69527 5.82043 5.89805 5.93458 5.99050 6.07416 6.11160 6.15826 6.20585 6.22859 6.26882 6.36127 6.39440 6.47819 6.70094 6.90423 6.90985 7.13904 7.16186 7.17382 7.43262 7.60690 7.68564 7.78582 8.04894 8.25130 8.83113 9.45654 10.92537 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.005410 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.169956 B = 5173.948503 C = 6398.382154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.530 5.530 4 C 0.051 3.949 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.113 4.113 8 C 0.081 3.919 9 H 0.051 0.949 10 C 0.126 3.874 11 N -1.119 6.119 12 S 2.783 3.217 13 O -1.003 7.003 14 O -0.986 6.986 15 N -0.992 5.992 16 C 0.110 3.890 17 C 0.267 3.733 18 H 0.058 0.942 19 C -0.145 4.145 20 C -0.523 4.523 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.885 5.885 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.415 0.585 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.011 0.989 49 H 0.091 0.909 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 9.961 5.662 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 N -0.256 5.256 4 C -0.077 4.077 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.029 4.029 9 H 0.069 0.931 10 C -0.001 4.001 11 N -0.880 5.880 12 S 2.791 3.209 13 O -0.987 6.987 14 O -0.969 6.969 15 N -0.835 5.835 16 C -0.037 4.037 17 C 0.164 3.836 18 H 0.076 0.924 19 C -0.204 4.204 20 C -0.562 4.562 21 H 0.081 0.919 22 C -0.137 4.137 23 N -0.523 5.523 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.249 0.751 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.030 0.970 49 H 0.110 0.890 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.234 10.534 4.676 14.768 hybrid contribution -0.671 -1.222 1.827 2.298 sum -9.905 9.312 6.502 15.070 Atomic orbital electron populations 1.21887 0.95365 1.01706 1.01935 1.22198 0.95335 0.88818 1.02035 1.61914 1.05548 1.12406 1.45768 1.22165 0.99639 0.93666 0.92218 1.21589 0.95943 0.95783 1.02111 1.21593 0.95522 0.99886 0.98887 1.21638 1.00030 0.93778 0.99635 1.21840 0.87355 0.96176 0.97500 0.93084 1.21344 0.98407 0.98584 0.81742 1.55801 1.44396 1.66875 1.20971 1.01749 0.73334 0.73100 0.72701 1.93539 1.73194 1.78748 1.53192 1.93569 1.32928 1.84136 1.86265 1.57705 1.32857 1.24175 1.68726 1.21135 0.86750 1.00050 0.95763 1.18718 0.85034 0.88889 0.90969 0.92405 1.22045 1.01070 1.00020 0.97300 1.21395 0.95286 1.19514 1.20046 0.91857 1.24909 0.94782 0.96991 0.97023 1.69892 1.04897 1.36145 1.41338 0.86557 0.79424 0.80675 0.81403 1.19783 1.21019 1.21075 0.92939 0.91879 0.92303 0.89043 0.94978 0.90298 0.95296 0.91138 0.92031 0.91979 0.92457 0.91186 0.90756 0.90156 0.89988 0.75051 0.94143 0.90384 0.93195 0.94936 0.96961 0.89035 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.41 37.16 0.35 -1.24 16 2 C 0.04 0.54 5.17 -3.83 -0.02 0.52 16 3 N -0.53 -6.31 3.82 -226.69 -0.87 -7.18 16 4 C 0.05 0.52 5.03 -3.83 -0.02 0.50 16 5 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 6 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 7 C -0.11 -1.33 5.27 -26.65 -0.14 -1.47 16 8 C 0.08 1.04 2.14 -67.72 -0.14 0.90 16 9 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 10 C 0.13 1.98 5.14 -4.04 -0.02 1.96 16 11 N -1.12 -17.72 5.37 -10.61 -0.06 -17.78 16 12 S 2.78 54.35 6.09 -107.50 -0.66 53.69 16 13 O -1.00 -20.86 17.21 -57.17 -0.98 -21.84 16 14 O -0.99 -22.39 16.16 -57.17 -0.92 -23.31 16 15 N -0.99 -20.13 3.12 -115.85 -0.36 -20.49 16 16 C 0.11 1.94 9.28 59.85 0.56 2.50 16 17 C 0.27 6.29 2.62 -69.08 -0.18 6.11 16 18 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 19 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 20 C -0.52 -12.65 7.73 -34.44 -0.27 -12.92 16 21 H 0.06 1.49 7.33 -52.48 -0.38 1.10 16 22 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 23 N -0.88 -23.55 11.32 55.43 0.63 -22.92 16 24 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.49 6.19 -51.93 -0.32 0.17 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.30 6.49 -51.93 -0.34 0.97 16 32 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.74 5.84 -51.93 -0.30 0.43 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 41 H 0.08 1.36 7.72 -51.93 -0.40 0.96 16 42 H 0.08 1.40 6.50 -51.93 -0.34 1.07 16 43 H 0.42 5.94 7.87 -34.47 -0.27 5.67 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.39 7.02 -51.92 -0.36 1.03 16 46 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 47 H 0.03 0.71 7.67 -51.93 -0.40 0.32 16 48 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 50 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -28.99 389.15 -11.15 -40.13 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.80 Total: 6.44 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 0.03 Total: -7.24 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.66 Total: -68.36 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.91 Total: -45.15 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.66 Total: 53.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.99 -11.15 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.456 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds