Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47387 * 2 1 4 4 C 1.46851 * 111.00192 * 51.77239 * 3 2 1 5 5 C 1.53039 * 109.52769 * 185.84083 * 4 3 2 6 6 C 1.53118 * 109.27693 * 300.82685 * 5 4 3 7 7 C 1.53116 * 109.16607 * 57.65247 * 6 5 4 8 8 C 1.46849 * 111.00608 * 175.98814 * 3 2 1 9 9 H 1.09005 * 109.45842 * 294.16403 * 8 3 2 10 10 C 1.52994 * 109.46145 * 54.13986 * 8 3 2 11 11 N 1.46503 * 109.47282 * 54.49897 * 10 8 3 12 12 S 1.65593 * 120.00292 * 163.67385 * 11 10 8 13 13 O 1.42101 * 106.40348 * 178.53936 * 12 11 10 14 14 O 1.42104 * 106.40132 * 311.45888 * 12 11 10 15 15 N 1.65597 * 107.21818 * 64.99862 * 12 11 10 16 16 C 1.46497 * 120.00035 * 90.00354 * 15 12 11 17 17 C 1.46504 * 119.99979 * 269.99695 * 15 12 11 18 18 H 1.09001 * 109.47018 * 0.02562 * 17 15 12 19 19 C 1.52997 * 109.47318 * 239.99823 * 17 15 12 20 20 C 1.50704 * 109.46894 * 120.00292 * 17 15 12 21 21 H 1.08007 * 120.00158 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00067 * 180.02562 * 20 17 15 23 23 N 1.31511 * 119.99878 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99937 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.47033 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47125 * 120.00459 * 24 22 20 27 27 H 1.48506 * 109.46781 * 240.00012 * 24 22 20 28 28 H 1.09004 * 109.47076 * 299.99758 * 1 2 3 29 29 H 1.08999 * 109.46939 * 60.00087 * 1 2 3 30 30 H 1.09000 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47262 * 239.99535 * 2 1 3 32 32 H 1.09008 * 109.47261 * 119.99431 * 2 1 3 33 33 H 1.08996 * 109.46388 * 305.86570 * 4 3 2 34 34 H 1.09004 * 109.45547 * 65.83612 * 4 3 2 35 35 H 1.09005 * 109.49857 * 60.76437 * 5 4 3 36 36 H 1.08997 * 109.50220 * 180.84225 * 5 4 3 37 37 H 1.09001 * 109.52253 * 177.55671 * 6 5 4 38 38 H 1.09001 * 109.52004 * 297.74279 * 6 5 4 39 39 H 1.08996 * 109.50571 * 182.40769 * 7 6 5 40 40 H 1.08997 * 109.50250 * 62.28153 * 7 6 5 41 41 H 1.09000 * 109.47335 * 174.49587 * 10 8 3 42 42 H 1.09004 * 109.47707 * 294.49591 * 10 8 3 43 43 H 0.97002 * 119.99628 * 343.66794 * 11 10 8 44 44 H 1.08996 * 109.47754 * 90.00091 * 16 15 12 45 45 H 1.09008 * 109.47121 * 209.99655 * 16 15 12 46 46 H 1.09001 * 109.47197 * 329.99551 * 16 15 12 47 47 H 1.09001 * 109.47774 * 300.00392 * 19 17 15 48 48 H 1.09000 * 109.46786 * 60.00737 * 19 17 15 49 49 H 1.08996 * 109.47298 * 179.97438 * 19 17 15 50 50 H 0.97005 * 120.00108 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3954 2.1639 1.0770 5 6 1.8158 3.6306 0.9573 6 6 3.3410 3.7284 1.0494 7 6 3.9672 2.8699 -0.0530 8 6 3.4845 1.4253 0.0959 9 1 3.7958 1.0367 1.0656 10 6 4.0920 0.5676 -1.0158 11 7 3.5697 1.0068 -2.3122 12 16 4.3328 0.5518 -3.7096 13 8 3.5742 1.1011 -4.7783 14 8 5.7148 0.8218 -3.5183 15 7 4.1905 -1.0935 -3.8325 16 6 3.0410 -1.6795 -4.5264 17 6 5.2141 -1.9630 -3.2473 18 1 5.9843 -1.3518 -2.7768 19 6 5.8439 -2.8208 -4.3467 20 6 4.5816 -2.8577 -2.2126 21 1 3.5228 -2.7860 -2.0113 22 6 5.3544 -3.7676 -1.5229 23 7 6.6436 -3.8545 -1.7676 24 14 4.5704 -4.8761 -0.2399 25 1 3.1174 -4.5820 -0.1530 26 1 4.7663 -6.2964 -0.6265 27 1 5.2045 -4.6305 1.0804 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 0.3109 2.0893 0.9975 34 1 1.7166 1.7717 2.0419 35 1 1.4829 4.0274 -0.0018 36 1 1.3641 4.2057 1.7656 37 1 3.6479 4.7664 0.9212 38 1 3.6710 3.3677 2.0236 39 1 5.0533 2.9014 0.0339 40 1 3.6682 3.2547 -1.0280 41 1 5.1766 0.6748 -1.0060 42 1 3.8288 -0.4777 -0.8534 43 1 2.7767 1.5641 -2.3519 44 1 3.2791 -1.8041 -5.5827 45 1 2.8092 -2.6508 -4.0893 46 1 2.1795 -1.0197 -4.4235 47 1 5.0735 -3.4319 -4.8169 48 1 6.3014 -2.1737 -5.0950 49 1 6.6058 -3.4673 -3.9114 50 1 7.1874 -4.4945 -1.2821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337968748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -100.252774 kcal Electronic energy + Delta-G solvation = -29889.541121 eV Core-core repulsion = 26077.328625 eV Total energy + Delta-G solvation = -3812.212496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.54165 -38.28954 -37.83244 -36.84419 -35.99809 -35.20528 -34.46714 -31.75891 -30.88254 -30.45174 -27.26058 -26.99238 -26.90833 -25.45989 -22.66804 -22.53469 -22.00105 -20.67141 -20.10323 -18.69186 -18.38789 -18.28798 -17.45348 -16.82847 -16.51799 -16.15979 -15.72272 -15.67018 -15.26772 -15.08380 -14.93722 -14.82187 -14.41066 -14.33722 -14.07140 -13.69460 -13.54656 -13.39566 -13.22653 -13.14245 -13.07619 -12.96534 -12.73473 -12.69054 -12.65714 -12.56117 -12.52424 -12.15932 -12.11335 -12.05668 -11.94334 -11.83558 -11.54161 -11.20666 -11.14674 -11.06687 -10.47489 -10.25954 -9.62197 -9.22227 -8.05877 -6.19510 -0.22002 1.44060 1.48390 1.56904 2.08810 2.46956 2.68642 2.94434 3.23108 3.48811 3.74861 3.85517 4.02159 4.15535 4.20544 4.28612 4.35323 4.38732 4.48881 4.53834 4.65788 4.68698 4.74387 4.80901 4.81849 4.85221 4.89683 4.98420 5.00355 5.05614 5.08451 5.10272 5.15845 5.19542 5.24842 5.28416 5.30349 5.32948 5.39669 5.53463 5.64593 5.73483 5.88389 6.11222 6.16556 6.25509 6.31927 6.38804 6.90083 7.49786 8.98958 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.005410 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.169956 B = 5173.948503 C = 6398.382154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 N -0.531 5.531 4 C 0.049 3.951 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.087 3.913 9 H 0.052 0.948 10 C 0.129 3.871 11 N -1.100 6.100 12 S 2.797 3.203 13 O -1.012 7.012 14 O -1.019 7.019 15 N -0.997 5.997 16 C 0.104 3.896 17 C 0.273 3.727 18 H 0.026 0.974 19 C -0.139 4.139 20 C -0.517 4.517 21 H 0.071 0.929 22 C 0.020 3.980 23 N -0.917 5.917 24 Si 0.951 3.049 25 H -0.261 1.261 26 H -0.287 1.287 27 H -0.287 1.287 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.425 0.575 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.015 0.985 49 H 0.069 0.931 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 10.735 6.709 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.078 4.078 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.023 4.023 9 H 0.069 0.931 10 C 0.002 3.998 11 N -0.864 5.864 12 S 2.806 3.194 13 O -0.996 6.996 14 O -1.003 7.003 15 N -0.838 5.838 16 C -0.042 4.042 17 C 0.169 3.831 18 H 0.044 0.956 19 C -0.199 4.199 20 C -0.557 4.557 21 H 0.089 0.911 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.777 3.223 25 H -0.185 1.185 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.088 0.912 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.681 11.323 5.706 17.240 hybrid contribution 0.071 -1.421 1.479 2.052 sum -11.610 9.902 7.185 16.866 Atomic orbital electron populations 1.21831 0.93548 1.02127 1.02672 1.22169 0.96828 0.88916 1.00624 1.61929 1.04659 1.12283 1.46854 1.22270 1.00216 0.93872 0.91420 1.21584 0.95393 0.95265 1.02787 1.21574 0.95928 0.99997 0.97997 1.21643 0.99945 0.93314 1.00298 1.21739 0.88217 0.96312 0.96013 0.93062 1.21288 0.97546 0.98514 0.82435 1.55388 1.44434 1.66560 1.20046 1.01148 0.72580 0.72737 0.72931 1.93518 1.73102 1.78816 1.54139 1.93527 1.35355 1.84588 1.86832 1.57592 1.33120 1.24041 1.69084 1.21327 0.86503 1.00495 0.95886 1.18404 0.85147 0.88608 0.90937 0.95624 1.21948 1.00802 0.99866 0.97303 1.21570 0.95486 1.18949 1.19683 0.91126 1.25601 0.95101 0.98404 0.98842 1.70024 1.06166 1.36990 1.42503 0.85622 0.79163 0.78607 0.78903 1.18490 1.21322 1.21331 0.91482 0.91783 0.92093 0.91147 0.95799 0.88999 0.95304 0.91412 0.89996 0.90825 0.92122 0.91728 0.91416 0.92033 0.91505 0.73799 0.93361 0.90432 0.90889 0.93841 0.96571 0.91222 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.41 71.98 0.68 -2.02 16 2 C 0.04 1.00 5.17 86.30 0.45 1.45 16 3 N -0.53 -11.80 3.82 -871.10 -3.33 -15.13 16 4 C 0.05 0.87 5.03 86.33 0.43 1.31 16 5 C -0.11 -1.75 6.09 30.65 0.19 -1.56 16 6 C -0.12 -2.03 6.00 30.67 0.18 -1.85 16 7 C -0.11 -2.57 5.27 30.65 0.16 -2.41 16 8 C 0.09 2.19 2.14 44.94 0.10 2.29 16 9 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 10 C 0.13 4.11 5.14 86.38 0.44 4.55 16 11 N -1.10 -34.62 5.37 -187.49 -1.01 -35.63 16 12 S 2.80 109.42 6.09 -56.49 -0.34 109.07 16 13 O -1.01 -41.14 17.21 -128.00 -2.20 -43.34 16 14 O -1.02 -47.44 16.16 -128.00 -2.07 -49.51 16 15 N -1.00 -40.28 3.12 -520.44 -1.62 -41.91 16 16 C 0.10 3.53 9.28 127.77 1.19 4.71 16 17 C 0.27 13.08 2.62 44.24 0.12 13.19 16 18 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 19 C -0.14 -6.66 8.97 71.98 0.65 -6.01 16 20 C -0.52 -25.07 7.73 25.60 0.20 -24.87 16 21 H 0.07 3.27 7.33 -2.91 -0.02 3.25 16 22 C 0.02 1.02 5.30 84.66 0.45 1.47 16 23 N -0.92 -49.81 11.32 21.45 0.24 -49.57 16 24 Si 0.95 40.18 29.54 68.60 2.03 42.20 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 28 H 0.07 1.05 6.19 -2.39 -0.01 1.04 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.96 6.49 -2.39 -0.02 1.94 16 32 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.09 1.41 5.84 -2.39 -0.01 1.40 16 34 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.61 7.60 -2.39 -0.02 1.59 16 41 H 0.06 2.19 7.72 -2.39 -0.02 2.17 16 42 H 0.07 2.34 6.50 -2.38 -0.02 2.32 16 43 H 0.42 11.74 7.87 -96.75 -0.76 10.98 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 2.65 7.02 -2.38 -0.02 2.64 16 46 H 0.07 2.13 7.79 -2.39 -0.02 2.12 16 47 H 0.04 1.92 7.67 -2.39 -0.02 1.90 16 48 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 50 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 Total: -1.00 -61.58 389.15 -2.93 -64.51 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.15 Total: 29.05 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.23 Total: -9.75 kcal Atomic # 7 Polarization: -136.51 SS G_CDS: -5.72 Total: -142.23 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -4.27 Total: -92.85 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 109.42 SS G_CDS: -0.34 Total: 109.07 kcal Total: -61.58 -2.93 -64.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.739 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds