Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47168 * 2 1 4 4 C 1.46846 * 111.00114 * 294.40830 * 3 2 1 5 5 C 1.53038 * 109.52460 * 174.15895 * 4 3 2 6 6 C 1.53113 * 109.27820 * 59.17656 * 5 4 3 7 7 C 1.53123 * 109.16413 * 302.34504 * 6 5 4 8 8 C 1.46847 * 111.00359 * 170.19423 * 3 2 1 9 9 H 1.08997 * 109.45173 * 65.82996 * 8 3 2 10 10 C 1.52999 * 109.45950 * 305.85869 * 8 3 2 11 11 N 1.46498 * 109.47317 * 305.87043 * 10 8 3 12 12 S 1.65603 * 120.00048 * 163.39235 * 11 10 8 13 13 O 1.42100 * 106.40284 * 311.46035 * 12 11 10 14 14 O 1.42104 * 106.39868 * 178.54262 * 12 11 10 15 15 N 1.65597 * 107.21961 * 65.00390 * 12 11 10 16 16 C 1.46504 * 119.99731 * 269.99984 * 15 12 11 17 17 C 1.46503 * 120.00216 * 89.99770 * 15 12 11 18 18 H 1.08997 * 109.46833 * 0.02562 * 17 15 12 19 19 C 1.52999 * 109.47076 * 240.00234 * 17 15 12 20 20 C 1.50697 * 109.46940 * 120.00281 * 17 15 12 21 21 H 1.08002 * 120.00262 * 5.65086 * 20 17 15 22 22 C 1.37885 * 119.99695 * 185.65088 * 20 17 15 23 23 N 1.31510 * 119.99612 * 198.08950 * 22 20 17 24 24 Si 1.86800 * 119.99869 * 18.09270 * 22 20 17 25 25 H 1.48502 * 109.46879 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47099 * 299.99787 * 24 22 20 27 27 H 1.48499 * 109.47283 * 59.99711 * 24 22 20 28 28 H 1.09001 * 109.47349 * 299.99754 * 1 2 3 29 29 H 1.09004 * 109.46784 * 60.00180 * 1 2 3 30 30 H 1.08999 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47349 * 240.00246 * 2 1 3 32 32 H 1.08994 * 109.47275 * 119.99933 * 2 1 3 33 33 H 1.08998 * 109.46686 * 54.14239 * 4 3 2 34 34 H 1.09004 * 109.45099 * 294.16748 * 4 3 2 35 35 H 1.09002 * 109.50033 * 299.23627 * 5 4 3 36 36 H 1.08998 * 109.53611 * 179.13670 * 5 4 3 37 37 H 1.09001 * 109.52380 * 182.44046 * 6 5 4 38 38 H 1.09001 * 109.57609 * 62.28291 * 6 5 4 39 39 H 1.08999 * 109.50025 * 297.71432 * 7 6 5 40 40 H 1.08994 * 109.53874 * 177.61719 * 7 6 5 41 41 H 1.09000 * 109.47172 * 185.87238 * 10 8 3 42 42 H 1.08997 * 109.47443 * 65.87255 * 10 8 3 43 43 H 0.97001 * 119.99954 * 343.39647 * 11 10 8 44 44 H 1.08997 * 109.46941 * 269.99490 * 16 15 12 45 45 H 1.08996 * 109.47093 * 30.00134 * 16 15 12 46 46 H 1.08999 * 109.46723 * 149.99511 * 16 15 12 47 47 H 1.08996 * 109.47034 * 174.23158 * 19 17 15 48 48 H 1.09001 * 109.47016 * 294.23499 * 19 17 15 49 49 H 1.09004 * 109.47448 * 54.23520 * 19 17 15 50 50 H 0.97000 * 120.00084 * 354.95456 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6610 2.0700 -1.2484 5 6 2.0569 3.5453 -1.1543 6 6 3.5646 3.6494 -0.9080 7 6 3.9186 2.8871 0.3719 8 6 3.4688 1.4309 0.2335 9 1 3.9867 0.9691 -0.6071 10 6 3.8024 0.6700 1.5182 11 7 2.9992 1.2004 2.6226 12 16 2.8344 0.3276 4.0203 13 8 2.4848 -0.9932 3.6297 14 8 2.0382 1.1162 4.8941 15 7 4.3339 0.2282 4.7159 16 6 5.2239 -0.8865 4.3817 17 6 4.7705 1.2549 5.6654 18 1 3.9809 1.9963 5.7873 19 6 6.0333 1.9365 5.1346 20 6 5.0672 0.6142 6.9967 21 1 5.0316 -0.4604 7.0988 22 6 5.3843 1.3999 8.0845 23 7 5.9805 0.8674 9.1287 24 14 4.9670 3.2207 8.0748 25 1 5.4082 3.8364 9.3521 26 1 5.6609 3.8816 6.9404 27 1 3.4995 3.3914 7.9245 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5858 1.9922 -1.4095 34 1 2.1877 1.6051 -2.0818 35 1 1.5203 4.0142 -0.3295 36 1 1.8048 4.0506 -2.0866 37 1 3.8441 4.6971 -0.7971 38 1 4.1030 3.2160 -1.7509 39 1 3.4113 3.3457 1.2206 40 1 4.9965 2.9215 0.5303 41 1 4.8610 0.7914 1.7479 42 1 3.5792 -0.3882 1.3822 43 1 2.5639 2.0629 2.5351 44 1 5.0491 -1.7108 5.0731 45 1 5.0239 -1.2182 3.3628 46 1 6.2607 -0.5597 4.4605 47 1 6.2997 2.7672 5.7880 48 1 6.8515 1.2167 5.1098 49 1 5.8482 2.3111 4.1278 50 1 6.1313 -0.0901 9.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337968753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = -76.612101 kcal Electronic energy + Delta-G solvation = -29479.962324 eV Core-core repulsion = 25668.774964 eV Total energy + Delta-G solvation = -3811.187360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.80623 -36.71337 -36.33139 -35.25248 -35.06728 -34.49603 -32.53082 -30.89522 -29.87440 -29.81016 -26.18576 -25.71672 -24.68848 -24.59009 -22.03399 -21.31056 -20.63623 -19.88075 -18.68277 -17.54613 -17.33418 -16.84579 -16.49339 -15.70835 -15.45409 -14.96595 -14.78935 -14.38091 -14.18506 -14.00116 -13.68919 -13.55511 -13.36564 -13.23637 -13.04492 -12.78341 -12.28074 -12.08112 -12.05189 -11.93573 -11.88603 -11.72196 -11.64070 -11.56700 -11.49698 -11.33485 -11.21822 -11.16970 -10.92482 -10.79363 -10.48163 -10.43839 -10.29415 -9.93044 -9.74470 -9.26660 -9.12056 -8.48160 -8.37128 -8.03236 -6.46059 -4.08532 1.17115 3.34872 3.43975 3.50041 3.61036 3.66293 4.12197 4.44774 4.47841 4.51711 4.64711 4.82554 4.86746 4.99784 5.04852 5.09983 5.19453 5.22906 5.31178 5.34761 5.35521 5.44677 5.46639 5.53576 5.58076 5.68497 5.71877 5.77478 5.87154 5.90840 5.98705 6.01448 6.06639 6.10411 6.20638 6.23928 6.37715 6.40349 6.56249 6.60061 6.92835 6.94703 6.96885 7.24654 7.35394 7.56504 8.00081 8.38185 8.90956 9.59627 10.92382 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003945 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.937666 B = 7096.755790 C = 7758.021421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 N -0.529 5.529 4 C 0.054 3.946 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.114 4.114 8 C 0.081 3.919 9 H 0.051 0.949 10 C 0.126 3.874 11 N -1.119 6.119 12 S 2.779 3.221 13 O -0.995 6.995 14 O -0.976 6.976 15 N -0.985 5.985 16 C 0.112 3.888 17 C 0.246 3.754 18 H 0.047 0.953 19 C -0.162 4.162 20 C -0.605 4.605 21 H 0.063 0.937 22 C 0.035 3.965 23 N -0.902 5.902 24 Si 1.034 2.966 25 H -0.283 1.283 26 H -0.272 1.272 27 H -0.276 1.276 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.417 0.583 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.027 0.973 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 3.154 -23.650 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 N -0.254 5.254 4 C -0.074 4.074 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.028 4.028 9 H 0.068 0.932 10 C -0.002 4.002 11 N -0.880 5.880 12 S 2.788 3.212 13 O -0.978 6.978 14 O -0.960 6.960 15 N -0.827 5.827 16 C -0.034 4.034 17 C 0.141 3.859 18 H 0.065 0.935 19 C -0.221 4.221 20 C -0.644 4.644 21 H 0.081 0.919 22 C -0.171 4.171 23 N -0.536 5.536 24 Si 0.862 3.138 25 H -0.209 1.209 26 H -0.198 1.198 27 H -0.202 1.202 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.252 0.748 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.127 4.211 -22.035 23.012 hybrid contribution 0.476 -1.458 -1.729 2.311 sum -4.651 2.753 -23.764 24.371 Atomic orbital electron populations 1.21792 0.94907 1.01642 1.02229 1.22228 0.96269 0.88700 1.01421 1.61866 1.12810 1.15921 1.34834 1.22131 1.00876 0.94425 0.89939 1.21597 0.96303 0.95752 1.01923 1.21574 0.96114 1.00427 0.97685 1.21644 1.01040 0.93926 0.98558 1.21798 0.88264 0.96623 0.96159 0.93155 1.21297 0.94937 0.97727 0.86225 1.55960 1.65360 1.35878 1.30846 1.01954 0.73526 0.73292 0.72457 1.93530 1.82524 1.38166 1.83600 1.93605 1.67606 1.71178 1.63617 1.57506 1.34801 1.34169 1.56256 1.21135 0.95458 0.88881 0.97964 1.18952 0.92698 0.86126 0.88084 0.93527 1.22546 1.00505 1.00681 0.98410 1.22166 1.53223 0.95349 0.93672 0.91860 1.25681 0.92429 1.06262 0.92758 1.70861 1.35459 1.14166 1.33096 0.84231 0.77676 0.75514 0.76383 1.20890 1.19845 1.20152 0.91714 0.92975 0.92272 0.95217 0.89306 0.90455 0.95264 0.90928 0.91816 0.91715 0.92450 0.90591 0.91094 0.91318 0.90723 0.74846 0.93253 0.93316 0.91081 0.91924 0.92931 0.95435 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.84 37.16 0.37 -1.09 16 2 C 0.04 0.43 5.39 -3.82 -0.02 0.41 16 3 N -0.53 -5.28 4.13 -226.69 -0.94 -6.22 16 4 C 0.05 0.45 5.29 -3.83 -0.02 0.43 16 5 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 6 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 7 C -0.11 -1.01 5.26 -26.65 -0.14 -1.15 16 8 C 0.08 0.78 2.12 -67.72 -0.14 0.63 16 9 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 10 C 0.13 1.42 5.14 -4.04 -0.02 1.40 16 11 N -1.12 -15.57 5.63 -10.62 -0.06 -15.63 16 12 S 2.78 52.85 6.09 -107.50 -0.66 52.19 16 13 O -0.99 -20.07 16.66 -57.17 -0.95 -21.02 16 14 O -0.98 -22.38 16.70 -57.17 -0.95 -23.33 16 15 N -0.99 -19.79 3.12 -115.85 -0.36 -20.15 16 16 C 0.11 1.96 9.48 59.85 0.57 2.53 16 17 C 0.25 5.71 2.21 -69.08 -0.15 5.56 16 18 H 0.05 1.14 5.55 -51.93 -0.29 0.85 16 19 C -0.16 -3.27 8.72 37.16 0.32 -2.95 16 20 C -0.60 -16.70 8.67 -34.44 -0.30 -17.00 16 21 H 0.06 1.88 7.75 -52.49 -0.41 1.48 16 22 C 0.03 0.99 5.34 -17.82 -0.10 0.90 16 23 N -0.90 -27.31 13.70 55.43 0.76 -26.55 16 24 Si 1.03 24.92 26.46 -169.99 -4.50 20.43 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -5.83 5.50 56.52 0.31 -5.52 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.44 6.42 -51.93 -0.33 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.28 8.13 -51.93 -0.42 -0.14 16 32 H 0.09 1.10 5.77 -51.93 -0.30 0.80 16 33 H 0.08 0.62 6.20 -51.93 -0.32 0.30 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.75 6.92 -51.93 -0.36 0.39 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.86 6.05 -51.93 -0.31 0.55 16 43 H 0.42 5.42 7.37 -34.47 -0.25 5.17 16 44 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 45 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 46 H 0.07 1.19 6.55 -51.93 -0.34 0.85 16 47 H 0.06 1.31 4.84 -51.93 -0.25 1.06 16 48 H 0.05 1.04 6.91 -51.93 -0.36 0.68 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -33.05 384.38 -10.49 -43.54 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.67 Total: 3.43 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 0.04 Total: -12.48 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.60 Total: -68.55 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.91 Total: -44.36 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.50 Total: 20.43 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.66 Total: 52.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -10.49 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.072 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds