Wall clock time and date at job start Tue Mar 31 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47168 * 2 1 4 4 C 1.46846 * 111.00114 * 294.40830 * 3 2 1 5 5 C 1.53038 * 109.52460 * 174.15895 * 4 3 2 6 6 C 1.53113 * 109.27820 * 59.17656 * 5 4 3 7 7 C 1.53123 * 109.16413 * 302.34504 * 6 5 4 8 8 C 1.46847 * 111.00359 * 170.19423 * 3 2 1 9 9 H 1.08997 * 109.45173 * 65.82996 * 8 3 2 10 10 C 1.52999 * 109.45950 * 305.85869 * 8 3 2 11 11 N 1.46498 * 109.47317 * 305.87043 * 10 8 3 12 12 S 1.65603 * 120.00048 * 163.39235 * 11 10 8 13 13 O 1.42100 * 106.40284 * 311.46035 * 12 11 10 14 14 O 1.42104 * 106.39868 * 178.54262 * 12 11 10 15 15 N 1.65597 * 107.21961 * 65.00390 * 12 11 10 16 16 C 1.46504 * 119.99731 * 269.99984 * 15 12 11 17 17 C 1.46503 * 120.00216 * 89.99770 * 15 12 11 18 18 H 1.08997 * 109.46833 * 0.02562 * 17 15 12 19 19 C 1.52999 * 109.47076 * 240.00234 * 17 15 12 20 20 C 1.50697 * 109.46940 * 120.00281 * 17 15 12 21 21 H 1.08002 * 120.00262 * 5.65086 * 20 17 15 22 22 C 1.37885 * 119.99695 * 185.65088 * 20 17 15 23 23 N 1.31510 * 119.99612 * 198.08950 * 22 20 17 24 24 Si 1.86800 * 119.99869 * 18.09270 * 22 20 17 25 25 H 1.48502 * 109.46879 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47099 * 299.99787 * 24 22 20 27 27 H 1.48499 * 109.47283 * 59.99711 * 24 22 20 28 28 H 1.09001 * 109.47349 * 299.99754 * 1 2 3 29 29 H 1.09004 * 109.46784 * 60.00180 * 1 2 3 30 30 H 1.08999 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47349 * 240.00246 * 2 1 3 32 32 H 1.08994 * 109.47275 * 119.99933 * 2 1 3 33 33 H 1.08998 * 109.46686 * 54.14239 * 4 3 2 34 34 H 1.09004 * 109.45099 * 294.16748 * 4 3 2 35 35 H 1.09002 * 109.50033 * 299.23627 * 5 4 3 36 36 H 1.08998 * 109.53611 * 179.13670 * 5 4 3 37 37 H 1.09001 * 109.52380 * 182.44046 * 6 5 4 38 38 H 1.09001 * 109.57609 * 62.28291 * 6 5 4 39 39 H 1.08999 * 109.50025 * 297.71432 * 7 6 5 40 40 H 1.08994 * 109.53874 * 177.61719 * 7 6 5 41 41 H 1.09000 * 109.47172 * 185.87238 * 10 8 3 42 42 H 1.08997 * 109.47443 * 65.87255 * 10 8 3 43 43 H 0.97001 * 119.99954 * 343.39647 * 11 10 8 44 44 H 1.08997 * 109.46941 * 269.99490 * 16 15 12 45 45 H 1.08996 * 109.47093 * 30.00134 * 16 15 12 46 46 H 1.08999 * 109.46723 * 149.99511 * 16 15 12 47 47 H 1.08996 * 109.47034 * 174.23158 * 19 17 15 48 48 H 1.09001 * 109.47016 * 294.23499 * 19 17 15 49 49 H 1.09004 * 109.47448 * 54.23520 * 19 17 15 50 50 H 0.97000 * 120.00084 * 354.95456 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6610 2.0700 -1.2484 5 6 2.0569 3.5453 -1.1543 6 6 3.5646 3.6494 -0.9080 7 6 3.9186 2.8871 0.3719 8 6 3.4688 1.4309 0.2335 9 1 3.9867 0.9691 -0.6071 10 6 3.8024 0.6700 1.5182 11 7 2.9992 1.2004 2.6226 12 16 2.8344 0.3276 4.0203 13 8 2.4848 -0.9932 3.6297 14 8 2.0382 1.1162 4.8941 15 7 4.3339 0.2282 4.7159 16 6 5.2239 -0.8865 4.3817 17 6 4.7705 1.2549 5.6654 18 1 3.9809 1.9963 5.7873 19 6 6.0333 1.9365 5.1346 20 6 5.0672 0.6142 6.9967 21 1 5.0316 -0.4604 7.0988 22 6 5.3843 1.3999 8.0845 23 7 5.9805 0.8674 9.1287 24 14 4.9670 3.2207 8.0748 25 1 5.4082 3.8364 9.3521 26 1 5.6609 3.8816 6.9404 27 1 3.4995 3.3914 7.9245 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5858 1.9922 -1.4095 34 1 2.1877 1.6051 -2.0818 35 1 1.5203 4.0142 -0.3295 36 1 1.8048 4.0506 -2.0866 37 1 3.8441 4.6971 -0.7971 38 1 4.1030 3.2160 -1.7509 39 1 3.4113 3.3457 1.2206 40 1 4.9965 2.9215 0.5303 41 1 4.8610 0.7914 1.7479 42 1 3.5792 -0.3882 1.3822 43 1 2.5639 2.0629 2.5351 44 1 5.0491 -1.7108 5.0731 45 1 5.0239 -1.2182 3.3628 46 1 6.2607 -0.5597 4.4605 47 1 6.2997 2.7672 5.7880 48 1 6.8515 1.2167 5.1098 49 1 5.8482 2.3111 4.1278 50 1 6.1313 -0.0901 9.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337968753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:17 Heat of formation + Delta-G solvation = -102.127332 kcal Electronic energy + Delta-G solvation = -29481.068747 eV Core-core repulsion = 25668.774964 eV Total energy + Delta-G solvation = -3812.293783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53683 -38.35382 -38.02223 -36.89018 -36.05506 -35.18597 -34.59872 -31.73617 -31.56699 -30.58668 -27.31198 -26.98651 -26.57040 -25.37000 -22.77688 -22.43972 -22.01732 -20.73795 -20.02366 -19.56812 -18.80609 -18.36159 -17.56626 -16.81727 -16.45158 -16.16717 -15.70438 -15.53108 -15.40367 -15.07289 -15.01465 -14.88600 -14.63477 -14.32982 -14.08911 -13.98890 -13.68737 -13.62066 -13.42393 -13.29682 -13.23302 -13.10936 -12.90275 -12.75524 -12.64692 -12.59473 -12.45999 -12.17524 -12.05355 -11.97969 -11.77169 -11.55407 -11.52915 -11.12422 -11.10970 -11.03338 -10.43739 -10.35526 -9.83281 -9.19321 -8.69336 -6.33948 -0.34403 1.44069 1.57986 1.72413 2.05547 2.48317 2.61492 2.94628 3.09132 3.41055 3.70303 3.83694 3.96266 4.00485 4.15737 4.23347 4.33128 4.37830 4.45435 4.50011 4.56924 4.61276 4.64073 4.66414 4.70094 4.77792 4.80980 4.82663 4.88757 4.92131 4.98097 5.05497 5.07948 5.09057 5.15526 5.22342 5.29208 5.32323 5.35708 5.39423 5.55515 5.61923 5.79534 6.01777 6.07107 6.16827 6.24068 6.29483 6.63258 7.42704 8.65917 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.003945 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.937666 B = 7096.755790 C = 7758.021421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 N -0.541 5.541 4 C 0.054 3.946 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.086 3.914 9 H 0.066 0.934 10 C 0.117 3.883 11 N -1.100 6.100 12 S 2.795 3.205 13 O -1.010 7.010 14 O -1.019 7.019 15 N -0.993 5.993 16 C 0.108 3.892 17 C 0.245 3.755 18 H 0.039 0.961 19 C -0.154 4.154 20 C -0.607 4.607 21 H 0.025 0.975 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 1.064 2.936 25 H -0.286 1.286 26 H -0.222 1.222 27 H -0.276 1.276 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.424 0.576 44 H 0.025 0.975 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.068 0.932 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 4.980 -27.099 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 N -0.267 5.267 4 C -0.073 4.073 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.024 4.024 9 H 0.083 0.917 10 C -0.010 4.010 11 N -0.865 5.865 12 S 2.803 3.197 13 O -0.993 6.993 14 O -1.003 7.003 15 N -0.834 5.834 16 C -0.038 4.038 17 C 0.139 3.861 18 H 0.057 0.943 19 C -0.213 4.213 20 C -0.646 4.646 21 H 0.043 0.957 22 C -0.214 4.214 23 N -0.571 5.571 24 Si 0.885 3.115 25 H -0.212 1.212 26 H -0.146 1.146 27 H -0.202 1.202 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.261 0.739 44 H 0.044 0.956 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.588 6.017 -25.514 26.613 hybrid contribution 0.243 -2.163 -0.747 2.301 sum -4.346 3.854 -26.261 26.896 Atomic orbital electron populations 1.21783 0.94736 1.01847 1.02104 1.22172 0.96476 0.89125 1.00864 1.61873 1.13194 1.15607 1.36038 1.22169 1.01107 0.94700 0.89321 1.21589 0.96347 0.95217 1.02221 1.21554 0.95973 1.00651 0.97283 1.21665 1.01447 0.93323 0.98797 1.21796 0.88225 0.97005 0.95387 0.91668 1.21614 0.95409 0.97914 0.86028 1.55453 1.65675 1.35730 1.29628 1.01257 0.72765 0.72858 0.72782 1.93507 1.82620 1.39350 1.83866 1.93540 1.68951 1.72019 1.65815 1.57436 1.35218 1.34375 1.56362 1.21290 0.95611 0.87521 0.99395 1.18788 0.94053 0.86424 0.86798 0.94293 1.22376 0.98355 1.00136 1.00420 1.22418 1.52040 0.93708 0.96423 0.95698 1.27015 0.91855 1.10265 0.92310 1.70988 1.38299 1.13190 1.34610 0.83899 0.77891 0.71483 0.78198 1.21160 1.14555 1.20218 0.93436 0.91449 0.91975 0.94091 0.91463 0.90318 0.94595 0.92062 0.90405 0.91165 0.91637 0.91760 0.90164 0.89476 0.90965 0.73926 0.95640 0.89635 0.90164 0.92465 0.92928 0.91283 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.84 71.98 0.71 -2.00 16 2 C 0.04 0.79 5.39 86.30 0.47 1.26 16 3 N -0.54 -9.52 4.13 -871.12 -3.60 -13.13 16 4 C 0.05 0.76 5.29 86.33 0.46 1.22 16 5 C -0.12 -1.44 6.09 30.64 0.19 -1.25 16 6 C -0.12 -1.38 6.00 30.67 0.18 -1.20 16 7 C -0.11 -1.64 5.26 30.65 0.16 -1.48 16 8 C 0.09 1.36 2.12 44.94 0.10 1.46 16 9 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 10 C 0.12 2.30 5.14 86.38 0.44 2.74 16 11 N -1.10 -28.40 5.63 -187.50 -1.06 -29.45 16 12 S 2.79 104.29 6.09 -56.49 -0.34 103.95 16 13 O -1.01 -40.35 16.66 -128.00 -2.13 -42.48 16 14 O -1.02 -46.83 16.70 -128.00 -2.14 -48.97 16 15 N -0.99 -38.95 3.12 -520.45 -1.62 -40.57 16 16 C 0.11 3.65 9.48 127.77 1.21 4.86 16 17 C 0.25 11.11 2.21 44.24 0.10 11.21 16 18 H 0.04 1.86 5.55 -2.39 -0.01 1.84 16 19 C -0.15 -5.73 8.72 71.98 0.63 -5.11 16 20 C -0.61 -34.16 8.67 25.60 0.22 -33.94 16 21 H 0.02 1.55 7.75 -2.91 -0.02 1.52 16 22 C -0.02 -0.89 5.34 84.66 0.45 -0.44 16 23 N -0.93 -58.39 13.70 21.45 0.29 -58.09 16 24 Si 1.06 49.40 26.46 68.60 1.81 51.22 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.22 -8.52 5.50 99.48 0.55 -7.97 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.01 6.42 -2.38 -0.02 0.99 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.07 1.59 5.77 -2.39 -0.01 1.57 16 33 H 0.08 1.07 6.20 -2.39 -0.01 1.05 16 34 H 0.04 0.46 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.08 6.92 -2.39 -0.02 1.06 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.50 6.05 -2.39 -0.01 1.48 16 43 H 0.42 10.20 7.37 -96.74 -0.71 9.49 16 44 H 0.02 0.96 8.09 -2.39 -0.02 0.94 16 45 H 0.09 2.24 7.79 -2.39 -0.02 2.22 16 46 H 0.08 2.56 6.55 -2.39 -0.02 2.54 16 47 H 0.06 2.19 4.84 -2.39 -0.01 2.18 16 48 H 0.05 1.95 6.91 -2.39 -0.02 1.93 16 49 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 Total: -1.00 -73.89 384.38 -3.46 -77.36 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.01 Total: 22.84 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 5.31 Total: -22.67 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -5.99 Total: -141.24 kcal Atomic # 8 Polarization: -87.18 SS G_CDS: -4.27 Total: -91.45 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.81 Total: 51.22 kcal Atomic # 16 Polarization: 104.29 SS G_CDS: -0.34 Total: 103.95 kcal Total: -73.89 -3.46 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.770 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds