Wall clock time and date at job start Tue Mar 31 2020 17:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47192 * 2 1 4 4 C 1.46845 * 111.00018 * 66.35640 * 3 2 1 5 5 C 1.53032 * 109.52191 * 185.83964 * 4 3 2 6 6 C 1.53118 * 109.28247 * 300.82661 * 5 4 3 7 7 C 1.53111 * 109.16071 * 57.65098 * 6 5 4 8 8 C 1.46847 * 111.00041 * 190.57241 * 3 2 1 9 9 H 1.08998 * 109.45971 * 294.17716 * 8 3 2 10 10 C 1.53001 * 109.46295 * 54.14328 * 8 3 2 11 11 N 1.46495 * 109.47564 * 53.94309 * 10 8 3 12 12 S 1.65595 * 120.00192 * 163.30236 * 11 10 8 13 13 O 1.42099 * 106.40321 * 178.53755 * 12 11 10 14 14 O 1.42095 * 106.40243 * 311.46040 * 12 11 10 15 15 N 1.65597 * 107.21625 * 65.00147 * 12 11 10 16 16 C 1.46500 * 120.00314 * 269.99566 * 15 12 11 17 17 C 1.46501 * 120.00263 * 89.99787 * 15 12 11 18 18 H 1.08998 * 109.46937 * 0.02562 * 17 15 12 19 19 C 1.53006 * 109.47012 * 119.99744 * 17 15 12 20 20 C 1.50696 * 109.47513 * 239.99724 * 17 15 12 21 21 H 1.07999 * 119.99699 * 0.02562 * 20 17 15 22 22 C 1.37873 * 120.00019 * 179.97438 * 20 17 15 23 23 N 1.31518 * 120.00542 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99844 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47301 * 90.00511 * 24 22 20 26 26 H 1.48509 * 109.47152 * 210.00420 * 24 22 20 27 27 H 1.48496 * 109.47372 * 330.00153 * 24 22 20 28 28 H 1.08995 * 109.47406 * 60.00527 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46872 * 299.99977 * 1 2 3 31 31 H 1.08999 * 109.47388 * 239.99925 * 2 1 3 32 32 H 1.08998 * 109.47496 * 120.00231 * 2 1 3 33 33 H 1.09003 * 109.46360 * 305.85922 * 4 3 2 34 34 H 1.09008 * 109.46032 * 65.83679 * 4 3 2 35 35 H 1.09002 * 109.50590 * 60.76534 * 5 4 3 36 36 H 1.08999 * 109.50516 * 180.84165 * 5 4 3 37 37 H 1.08998 * 109.52386 * 177.56115 * 6 5 4 38 38 H 1.09006 * 109.51856 * 297.68315 * 6 5 4 39 39 H 1.09005 * 109.50394 * 62.29239 * 7 6 5 40 40 H 1.09006 * 109.50304 * 182.36890 * 7 6 5 41 41 H 1.09003 * 109.46855 * 173.94536 * 10 8 3 42 42 H 1.09000 * 109.47032 * 293.93659 * 10 8 3 43 43 H 0.97001 * 119.99605 * 343.30064 * 11 10 8 44 44 H 1.09002 * 109.46716 * 90.00045 * 16 15 12 45 45 H 1.08995 * 109.47675 * 210.00145 * 16 15 12 46 46 H 1.08998 * 109.46858 * 330.00626 * 16 15 12 47 47 H 1.09005 * 109.46986 * 180.02562 * 19 17 15 48 48 H 1.08997 * 109.47354 * 300.00382 * 19 17 15 49 49 H 1.09003 * 109.47126 * 60.00426 * 19 17 15 50 50 H 0.96991 * 120.00657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6767 2.0644 1.2558 5 6 2.0715 3.5401 1.1633 6 6 3.5759 3.6453 0.8985 7 6 3.9137 2.8888 -0.3891 8 6 3.4657 1.4320 -0.2515 9 1 3.9942 0.9663 0.5802 10 6 3.7831 0.6768 -1.5438 11 7 2.9630 1.2091 -2.6346 12 16 3.3684 0.8885 -4.2079 13 8 2.3734 1.5063 -5.0126 14 8 4.7550 1.1737 -4.3310 15 7 3.2049 -0.7438 -4.4333 16 6 4.3414 -1.6348 -4.1871 17 6 1.9236 -1.2971 -4.8789 18 1 1.2043 -0.4886 -5.0088 19 6 2.1180 -2.0250 -6.2106 20 6 1.4090 -2.2671 -3.8468 21 1 1.9791 -2.4525 -2.9485 22 6 0.2099 -2.9169 -4.0488 23 7 -0.4846 -2.6907 -5.1425 24 14 -0.4283 -4.1186 -2.7691 25 1 -1.2720 -3.3930 -1.7858 26 1 -1.2387 -5.1689 -3.4368 27 1 0.7182 -4.7497 -2.0673 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.6036 1.9858 1.4300 34 1 2.2139 1.5960 2.0806 35 1 1.5246 4.0127 0.3474 36 1 1.8305 4.0408 2.1010 37 1 3.8540 4.6935 0.7888 38 1 4.1241 3.2085 1.7333 39 1 3.3958 3.3511 -1.2294 40 1 4.9896 2.9245 -0.5606 41 1 4.8380 0.8019 -1.7879 42 1 3.5647 -0.3825 -1.4085 43 1 2.1824 1.7494 -2.4354 44 1 4.3284 -1.9614 -3.1473 45 1 4.2706 -2.5035 -4.8417 46 1 5.2708 -1.1024 -4.3891 47 1 1.1646 -2.4362 -6.5424 48 1 2.4902 -1.3235 -6.9572 49 1 2.8375 -2.8335 -6.0812 50 1 -1.3280 -3.1481 -5.2848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337968755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:21 Heat of formation + Delta-G solvation = -79.242004 kcal Electronic energy + Delta-G solvation = -29895.281740 eV Core-core repulsion = 26083.980339 eV Total energy + Delta-G solvation = -3811.301401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.59436 -36.59960 -36.10636 -35.16496 -34.84583 -34.24132 -32.57059 -30.70323 -29.59640 -29.03452 -25.96530 -25.49848 -25.11227 -24.43085 -21.83518 -21.04781 -20.70586 -19.66727 -18.65434 -17.18015 -16.79405 -16.39706 -16.13398 -15.60698 -15.21988 -14.88100 -14.58650 -14.33362 -14.16833 -13.99250 -13.48286 -13.43035 -13.22675 -13.06991 -12.78770 -12.46870 -12.06513 -11.89898 -11.72546 -11.67053 -11.54481 -11.53331 -11.42665 -11.31576 -11.12976 -11.11867 -10.98922 -10.91610 -10.82896 -10.68984 -10.43560 -10.30046 -10.23544 -10.20280 -10.00307 -9.28414 -8.94106 -8.46125 -8.26676 -7.91638 -6.07203 -4.14962 1.37036 3.23304 3.31375 3.32085 3.57833 3.89141 4.25079 4.36195 4.64181 4.69554 4.81507 5.00329 5.09400 5.19780 5.23424 5.26573 5.34752 5.43699 5.48589 5.56358 5.60643 5.70314 5.71464 5.74504 5.84202 5.87302 5.90298 6.05166 6.06994 6.13398 6.16049 6.23327 6.33109 6.35028 6.41815 6.54995 6.67903 6.87327 6.90445 7.13883 7.16581 7.17789 7.43292 7.62992 7.70039 7.82028 8.07341 8.29211 8.87490 9.50907 10.97958 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.005546 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.909671 B = 5047.917290 C = 6781.021021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.530 5.530 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.113 4.113 8 C 0.082 3.918 9 H 0.049 0.951 10 C 0.128 3.872 11 N -1.116 6.116 12 S 2.783 3.217 13 O -0.983 6.983 14 O -1.004 7.004 15 N -0.991 5.991 16 C 0.100 3.900 17 C 0.269 3.731 18 H 0.059 0.941 19 C -0.146 4.146 20 C -0.518 4.518 21 H 0.061 0.939 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.892 3.108 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.421 0.579 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.012 0.988 49 H 0.032 0.968 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 7.426 12.486 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.255 5.255 4 C -0.073 4.073 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.028 4.028 9 H 0.066 0.934 10 C 0.000 4.000 11 N -0.877 5.877 12 S 2.792 3.208 13 O -0.967 6.967 14 O -0.987 6.987 15 N -0.834 5.834 16 C -0.047 4.047 17 C 0.166 3.834 18 H 0.077 0.923 19 C -0.206 4.206 20 C -0.558 4.558 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.720 3.280 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.256 0.744 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.031 0.969 49 H 0.051 0.949 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.691 8.145 11.321 15.468 hybrid contribution -0.554 -1.381 1.818 2.350 sum 6.137 6.763 13.139 16.001 Atomic orbital electron populations 1.21749 0.94738 1.01835 1.01943 1.22241 0.96419 0.88149 1.01573 1.61840 1.13106 1.16542 1.34052 1.22108 1.00960 0.94259 0.89953 1.21595 0.96260 0.95955 1.01725 1.21579 0.96240 1.00245 0.97720 1.21634 1.00879 0.94208 0.98366 1.21777 0.88467 0.96409 0.96137 0.93353 1.21255 0.94712 0.97386 0.86600 1.55796 1.40895 1.67384 1.23606 1.01707 0.72801 0.73361 0.72959 1.93590 1.60901 1.75787 1.66464 1.93514 1.34431 1.84356 1.86408 1.57673 1.20192 1.24195 1.81295 1.21250 0.87269 0.95521 1.00649 1.18696 0.77770 0.94590 0.92320 0.92348 1.22071 1.02725 0.98694 0.97082 1.21319 1.05090 1.24609 1.04778 0.92127 1.24892 0.96616 0.96743 0.95458 1.69874 1.14521 1.42792 1.25347 0.86606 0.78880 0.80914 0.81592 1.20605 1.21326 1.20054 0.91332 0.92279 0.93556 0.88615 0.95591 0.90430 0.95381 0.90968 0.91971 0.91937 0.92540 0.90566 0.91371 0.90528 0.91615 0.74405 0.94123 0.90751 0.92165 0.88923 0.96914 0.94902 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.85 37.16 0.37 -1.63 16 2 C 0.04 0.58 5.41 -3.82 -0.02 0.56 16 3 N -0.53 -6.44 3.68 -226.69 -0.84 -7.27 16 4 C 0.06 0.57 5.30 -3.84 -0.02 0.55 16 5 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 6 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 7 C -0.11 -1.21 5.28 -26.66 -0.14 -1.35 16 8 C 0.08 0.95 2.15 -67.72 -0.15 0.80 16 9 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 10 C 0.13 1.71 5.13 -4.04 -0.02 1.69 16 11 N -1.12 -17.64 5.46 -10.61 -0.06 -17.70 16 12 S 2.78 54.08 6.14 -107.50 -0.66 53.42 16 13 O -0.98 -22.62 16.70 -57.17 -0.95 -23.57 16 14 O -1.00 -20.26 16.19 -57.17 -0.93 -21.18 16 15 N -0.99 -20.09 3.12 -115.85 -0.36 -20.45 16 16 C 0.10 1.73 9.90 59.85 0.59 2.32 16 17 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 18 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 19 C -0.15 -3.46 8.95 37.16 0.33 -3.12 16 20 C -0.52 -12.89 8.37 -34.44 -0.29 -13.18 16 21 H 0.06 1.46 7.65 -52.49 -0.40 1.06 16 22 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 23 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 24 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.55 6.45 -51.93 -0.33 0.21 16 31 H 0.10 1.48 5.74 -51.93 -0.30 1.18 16 32 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 33 H 0.08 0.80 6.24 -51.93 -0.32 0.48 16 34 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.91 7.65 -51.93 -0.40 0.51 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 42 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 43 H 0.42 6.55 7.89 -34.47 -0.27 6.28 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 46 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 47 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 50 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -29.65 388.70 -10.96 -40.61 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.69 Total: 6.73 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.99 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.63 Total: -68.88 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.88 Total: -44.75 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.66 Total: 53.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.65 -10.96 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.631 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds