Wall clock time and date at job start Tue Mar 31 2020 17:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47192 * 2 1 4 4 C 1.46845 * 111.00018 * 66.35640 * 3 2 1 5 5 C 1.53032 * 109.52191 * 185.83964 * 4 3 2 6 6 C 1.53118 * 109.28247 * 300.82661 * 5 4 3 7 7 C 1.53111 * 109.16071 * 57.65098 * 6 5 4 8 8 C 1.46847 * 111.00041 * 190.57241 * 3 2 1 9 9 H 1.08998 * 109.45971 * 294.17716 * 8 3 2 10 10 C 1.53001 * 109.46295 * 54.14328 * 8 3 2 11 11 N 1.46495 * 109.47564 * 53.94309 * 10 8 3 12 12 S 1.65595 * 120.00192 * 163.30236 * 11 10 8 13 13 O 1.42099 * 106.40321 * 178.53755 * 12 11 10 14 14 O 1.42095 * 106.40243 * 311.46040 * 12 11 10 15 15 N 1.65597 * 107.21625 * 65.00147 * 12 11 10 16 16 C 1.46500 * 120.00314 * 269.99566 * 15 12 11 17 17 C 1.46501 * 120.00263 * 89.99787 * 15 12 11 18 18 H 1.08998 * 109.46937 * 0.02562 * 17 15 12 19 19 C 1.53006 * 109.47012 * 119.99744 * 17 15 12 20 20 C 1.50696 * 109.47513 * 239.99724 * 17 15 12 21 21 H 1.07999 * 119.99699 * 0.02562 * 20 17 15 22 22 C 1.37873 * 120.00019 * 179.97438 * 20 17 15 23 23 N 1.31518 * 120.00542 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99844 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47301 * 90.00511 * 24 22 20 26 26 H 1.48509 * 109.47152 * 210.00420 * 24 22 20 27 27 H 1.48496 * 109.47372 * 330.00153 * 24 22 20 28 28 H 1.08995 * 109.47406 * 60.00527 * 1 2 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46872 * 299.99977 * 1 2 3 31 31 H 1.08999 * 109.47388 * 239.99925 * 2 1 3 32 32 H 1.08998 * 109.47496 * 120.00231 * 2 1 3 33 33 H 1.09003 * 109.46360 * 305.85922 * 4 3 2 34 34 H 1.09008 * 109.46032 * 65.83679 * 4 3 2 35 35 H 1.09002 * 109.50590 * 60.76534 * 5 4 3 36 36 H 1.08999 * 109.50516 * 180.84165 * 5 4 3 37 37 H 1.08998 * 109.52386 * 177.56115 * 6 5 4 38 38 H 1.09006 * 109.51856 * 297.68315 * 6 5 4 39 39 H 1.09005 * 109.50394 * 62.29239 * 7 6 5 40 40 H 1.09006 * 109.50304 * 182.36890 * 7 6 5 41 41 H 1.09003 * 109.46855 * 173.94536 * 10 8 3 42 42 H 1.09000 * 109.47032 * 293.93659 * 10 8 3 43 43 H 0.97001 * 119.99605 * 343.30064 * 11 10 8 44 44 H 1.09002 * 109.46716 * 90.00045 * 16 15 12 45 45 H 1.08995 * 109.47675 * 210.00145 * 16 15 12 46 46 H 1.08998 * 109.46858 * 330.00626 * 16 15 12 47 47 H 1.09005 * 109.46986 * 180.02562 * 19 17 15 48 48 H 1.08997 * 109.47354 * 300.00382 * 19 17 15 49 49 H 1.09003 * 109.47126 * 60.00426 * 19 17 15 50 50 H 0.96991 * 120.00657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6767 2.0644 1.2558 5 6 2.0715 3.5401 1.1633 6 6 3.5759 3.6453 0.8985 7 6 3.9137 2.8888 -0.3891 8 6 3.4657 1.4320 -0.2515 9 1 3.9942 0.9663 0.5802 10 6 3.7831 0.6768 -1.5438 11 7 2.9630 1.2091 -2.6346 12 16 3.3684 0.8885 -4.2079 13 8 2.3734 1.5063 -5.0126 14 8 4.7550 1.1737 -4.3310 15 7 3.2049 -0.7438 -4.4333 16 6 4.3414 -1.6348 -4.1871 17 6 1.9236 -1.2971 -4.8789 18 1 1.2043 -0.4886 -5.0088 19 6 2.1180 -2.0250 -6.2106 20 6 1.4090 -2.2671 -3.8468 21 1 1.9791 -2.4525 -2.9485 22 6 0.2099 -2.9169 -4.0488 23 7 -0.4846 -2.6907 -5.1425 24 14 -0.4283 -4.1186 -2.7691 25 1 -1.2720 -3.3930 -1.7858 26 1 -1.2387 -5.1689 -3.4368 27 1 0.7182 -4.7497 -2.0673 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.6036 1.9858 1.4300 34 1 2.2139 1.5960 2.0806 35 1 1.5246 4.0127 0.3474 36 1 1.8305 4.0408 2.1010 37 1 3.8540 4.6935 0.7888 38 1 4.1241 3.2085 1.7333 39 1 3.3958 3.3511 -1.2294 40 1 4.9896 2.9245 -0.5606 41 1 4.8380 0.8019 -1.7879 42 1 3.5647 -0.3825 -1.4085 43 1 2.1824 1.7494 -2.4354 44 1 4.3284 -1.9614 -3.1473 45 1 4.2706 -2.5035 -4.8417 46 1 5.2708 -1.1024 -4.3891 47 1 1.1646 -2.4362 -6.5424 48 1 2.4902 -1.3235 -6.9572 49 1 2.8375 -2.8335 -6.0812 50 1 -1.3280 -3.1481 -5.2848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337968755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:20 Heat of formation + Delta-G solvation = -99.477289 kcal Electronic energy + Delta-G solvation = -29896.159207 eV Core-core repulsion = 26083.980339 eV Total energy + Delta-G solvation = -3812.178869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51215 -38.26810 -37.84338 -36.84120 -35.96796 -35.15729 -34.45625 -31.70677 -30.86801 -30.56279 -27.27979 -27.02718 -26.82993 -25.32478 -22.77876 -22.53666 -21.97140 -20.65813 -20.06090 -18.75100 -18.33900 -18.22057 -17.38756 -17.02608 -16.48373 -16.22157 -15.77644 -15.47612 -15.24305 -15.10904 -14.91292 -14.75242 -14.55636 -14.32679 -14.07439 -13.65187 -13.49250 -13.40737 -13.18343 -13.17022 -13.07032 -12.88105 -12.77059 -12.68681 -12.63188 -12.59501 -12.55948 -12.22318 -12.10524 -12.02423 -11.90091 -11.81450 -11.53001 -11.19555 -11.11306 -11.08964 -10.45137 -10.22903 -9.59731 -9.17720 -8.04169 -6.17722 -0.19534 1.45846 1.47870 1.55875 2.09391 2.48518 2.69144 2.96207 3.24958 3.50665 3.74423 3.86144 4.02285 4.16785 4.18234 4.28781 4.34810 4.39963 4.50597 4.52065 4.63771 4.67659 4.76167 4.77633 4.82534 4.85631 4.92589 4.94253 4.99484 5.04805 5.08202 5.12175 5.15725 5.20612 5.22174 5.28774 5.31129 5.32965 5.42502 5.55943 5.65564 5.75969 5.90723 6.12102 6.20375 6.26242 6.34037 6.36732 6.90958 7.51498 9.00601 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.005546 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.909671 B = 5047.917290 C = 6781.021021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.055 3.945 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.086 3.914 9 H 0.066 0.934 10 C 0.121 3.879 11 N -1.105 6.105 12 S 2.798 3.202 13 O -1.023 7.023 14 O -1.009 7.009 15 N -0.996 5.996 16 C 0.094 3.906 17 C 0.275 3.725 18 H 0.022 0.978 19 C -0.141 4.141 20 C -0.516 4.516 21 H 0.069 0.931 22 C 0.018 3.982 23 N -0.920 5.920 24 Si 0.951 3.049 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.264 1.264 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.422 0.578 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.017 0.983 49 H 0.046 0.954 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 7.371 15.114 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.267 5.267 4 C -0.073 4.073 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.023 4.023 9 H 0.083 0.917 10 C -0.005 4.005 11 N -0.869 5.869 12 S 2.807 3.193 13 O -1.008 7.008 14 O -0.992 6.992 15 N -0.838 5.838 16 C -0.051 4.051 17 C 0.171 3.829 18 H 0.040 0.960 19 C -0.200 4.200 20 C -0.555 4.555 21 H 0.087 0.913 22 C -0.181 4.181 23 N -0.559 5.559 24 Si 0.777 3.223 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.188 1.188 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.258 0.742 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.072 8.090 13.960 18.041 hybrid contribution -0.927 -1.310 1.023 1.903 sum 7.144 6.780 14.983 17.931 Atomic orbital electron populations 1.21704 0.95302 1.01094 1.01860 1.22111 0.95916 0.88966 1.01027 1.61812 1.13585 1.15839 1.35467 1.22163 1.01099 0.94770 0.89225 1.21586 0.96314 0.95172 1.02198 1.21554 0.96088 1.00622 0.97047 1.21653 1.01147 0.93642 0.98788 1.21772 0.88316 0.96862 0.95380 0.91673 1.21503 0.94729 0.97640 0.86652 1.55483 1.41289 1.67139 1.22942 1.01083 0.72064 0.72806 0.73321 1.93532 1.62130 1.76654 1.68466 1.93500 1.34537 1.84323 1.86868 1.57546 1.19684 1.24771 1.81795 1.21452 0.86678 0.95205 1.01789 1.18350 0.78707 0.93285 0.92568 0.96038 1.21963 1.01820 0.99100 0.97135 1.21538 1.05010 1.24057 1.04934 0.91289 1.25612 0.97016 0.98413 0.97045 1.70018 1.14852 1.43956 1.27114 0.85670 0.78482 0.78765 0.79379 1.20250 1.21838 1.18841 0.93531 0.93311 0.91507 0.90876 0.94321 0.90485 0.94481 0.92224 0.90162 0.91053 0.91416 0.92237 0.90565 0.89554 0.91667 0.74180 0.92283 0.90949 0.90595 0.91256 0.96441 0.93543 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.85 71.98 0.71 -3.10 16 2 C 0.05 1.20 5.41 86.30 0.47 1.67 16 3 N -0.54 -12.24 3.68 -871.12 -3.21 -15.45 16 4 C 0.05 1.00 5.30 86.32 0.46 1.46 16 5 C -0.11 -1.85 6.09 30.64 0.19 -1.66 16 6 C -0.12 -1.77 6.00 30.67 0.18 -1.58 16 7 C -0.11 -2.20 5.28 30.64 0.16 -2.04 16 8 C 0.09 1.81 2.15 44.94 0.10 1.90 16 9 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 10 C 0.12 3.04 5.13 86.38 0.44 3.49 16 11 N -1.10 -34.49 5.46 -187.50 -1.02 -35.52 16 12 S 2.80 108.69 6.14 -56.49 -0.35 108.35 16 13 O -1.02 -48.37 16.70 -128.00 -2.14 -50.51 16 14 O -1.01 -39.70 16.19 -128.00 -2.07 -41.77 16 15 N -1.00 -40.07 3.12 -520.45 -1.62 -41.69 16 16 C 0.09 3.12 9.90 127.77 1.27 4.38 16 17 C 0.28 13.41 2.62 44.25 0.12 13.52 16 18 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 19 C -0.14 -6.74 8.95 71.98 0.64 -6.10 16 20 C -0.52 -25.59 8.37 25.60 0.21 -25.38 16 21 H 0.07 3.25 7.65 -2.91 -0.02 3.22 16 22 C 0.02 0.95 5.30 84.65 0.45 1.40 16 23 N -0.92 -50.99 11.32 21.45 0.24 -50.75 16 24 Si 0.95 40.88 29.54 68.60 2.03 42.91 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.48 6.45 -2.39 -0.02 1.46 16 31 H 0.07 2.19 5.74 -2.39 -0.01 2.18 16 32 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.08 1.42 6.24 -2.39 -0.01 1.40 16 34 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.06 1.35 7.65 -2.38 -0.02 1.33 16 40 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 2.01 7.72 -2.39 -0.02 1.99 16 42 H 0.07 1.67 6.47 -2.39 -0.02 1.65 16 43 H 0.42 13.22 7.89 -96.74 -0.76 12.46 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 46 H 0.08 2.27 7.02 -2.39 -0.02 2.25 16 47 H 0.07 3.67 6.07 -2.38 -0.01 3.65 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 2.04 6.66 -2.39 -0.02 2.02 16 50 H 0.26 13.90 8.31 -92.72 -0.77 13.13 16 Total: -1.00 -63.43 388.70 -2.59 -66.03 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.16 Total: 30.44 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.39 Total: -12.03 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -5.61 Total: -143.41 kcal Atomic # 8 Polarization: -88.07 SS G_CDS: -4.21 Total: -92.28 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 108.69 SS G_CDS: -0.35 Total: 108.35 kcal Total: -63.43 -2.59 -66.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.451 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds