Wall clock time and date at job start Tue Mar 31 2020 17:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47099 * 2 1 4 4 C 1.46848 * 111.00386 * 65.24743 * 3 2 1 5 5 C 1.53030 * 109.52580 * 174.16392 * 4 3 2 6 6 C 1.53118 * 109.28304 * 59.17921 * 5 4 3 7 7 C 1.53120 * 109.15681 * 302.34555 * 6 5 4 8 8 C 1.46847 * 110.99415 * 300.99873 * 3 2 1 9 9 H 1.09000 * 109.43631 * 65.80918 * 8 3 2 10 10 C 1.53002 * 109.49604 * 305.83680 * 8 3 2 11 11 N 1.46505 * 109.46934 * 305.44149 * 10 8 3 12 12 S 1.65600 * 119.99829 * 164.24134 * 11 10 8 13 13 O 1.42101 * 106.40006 * 178.54344 * 12 11 10 14 14 O 1.42096 * 106.40286 * 311.46148 * 12 11 10 15 15 N 1.65605 * 107.21884 * 65.00429 * 12 11 10 16 16 C 1.46497 * 119.99771 * 269.99968 * 15 12 11 17 17 C 1.46491 * 120.00078 * 89.99616 * 15 12 11 18 18 H 1.09004 * 109.47403 * 0.02562 * 17 15 12 19 19 C 1.53007 * 109.47073 * 120.00266 * 17 15 12 20 20 C 1.50703 * 109.47225 * 240.00056 * 17 15 12 21 21 H 1.07988 * 120.00032 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99855 * 179.97438 * 20 17 15 23 23 N 1.31514 * 120.00051 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99963 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47098 * 90.00146 * 24 22 20 26 26 H 1.48497 * 109.47106 * 210.00596 * 24 22 20 27 27 H 1.48501 * 109.46865 * 330.00219 * 24 22 20 28 28 H 1.08993 * 109.47525 * 300.00472 * 1 2 3 29 29 H 1.09001 * 109.46800 * 60.00442 * 1 2 3 30 30 H 1.09008 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47212 * 239.99111 * 2 1 3 32 32 H 1.09001 * 109.46800 * 119.99557 * 2 1 3 33 33 H 1.08998 * 109.46207 * 54.14213 * 4 3 2 34 34 H 1.09005 * 109.45345 * 294.17171 * 4 3 2 35 35 H 1.09003 * 109.50096 * 299.23627 * 5 4 3 36 36 H 1.09004 * 109.53667 * 179.13784 * 5 4 3 37 37 H 1.08994 * 109.52384 * 182.44617 * 6 5 4 38 38 H 1.08996 * 109.57636 * 62.28148 * 6 5 4 39 39 H 1.09002 * 109.50463 * 177.59014 * 7 6 5 40 40 H 1.08993 * 109.50624 * 297.67193 * 7 6 5 41 41 H 1.09000 * 109.47367 * 65.44261 * 10 8 3 42 42 H 1.09001 * 109.47326 * 185.44548 * 10 8 3 43 43 H 0.96998 * 120.00179 * 344.25131 * 11 10 8 44 44 H 1.09009 * 109.47094 * 89.99909 * 16 15 12 45 45 H 1.08997 * 109.46930 * 209.99837 * 16 15 12 46 46 H 1.09003 * 109.47460 * 329.99981 * 16 15 12 47 47 H 1.09000 * 109.46826 * 180.02562 * 19 17 15 48 48 H 1.08996 * 109.46842 * 300.00093 * 19 17 15 49 49 H 1.08999 * 109.46791 * 60.00325 * 19 17 15 50 50 H 0.96997 * 120.00289 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6539 2.0725 1.2450 5 6 2.3016 3.4587 1.2729 6 6 1.8224 4.2652 0.0628 7 6 2.1727 3.5043 -1.2189 8 6 1.5293 2.1163 -1.1752 9 1 0.4461 2.2200 -1.1119 10 6 1.8941 1.3452 -2.4453 11 7 3.3369 1.0916 -2.4653 12 16 3.9642 -0.0414 -3.4973 13 8 5.3718 -0.0256 -3.3028 14 8 3.1711 -1.2099 -3.3403 15 7 3.6991 0.5001 -5.0397 16 6 2.4648 0.1384 -5.7409 17 6 4.6989 1.3408 -5.7028 18 1 5.5420 1.5014 -5.0308 19 6 5.1869 0.6454 -6.9753 20 6 4.0814 2.6680 -6.0609 21 1 3.0478 2.8656 -5.8184 22 6 4.8364 3.6303 -6.6973 23 7 6.0953 3.3898 -6.9921 24 14 4.0712 5.2758 -7.1406 25 1 4.2579 6.2275 -6.0161 26 1 4.7271 5.8144 -8.3591 27 1 2.6203 5.0933 -7.3990 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0041 1.4907 2.0975 34 1 0.5702 2.1769 1.2971 35 1 3.3860 3.3545 1.2346 36 1 2.0179 3.9752 2.1900 37 1 2.3147 5.2376 0.0551 38 1 0.7429 4.4039 0.1207 39 1 1.7961 4.0528 -2.0822 40 1 3.2550 3.4014 -1.2968 41 1 1.3581 0.3962 -2.4608 42 1 1.6165 1.9335 -3.3200 43 1 3.9247 1.5873 -1.8740 44 1 1.7000 0.8891 -5.5409 45 1 2.6563 0.0915 -6.8129 46 1 2.1194 -0.8343 -5.3906 47 1 5.9311 1.2707 -7.4685 48 1 5.6335 -0.3146 -6.7163 49 1 4.3440 0.4845 -7.6474 50 1 6.6264 4.0666 -7.4401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337968756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:25 Heat of formation + Delta-G solvation = -79.204296 kcal Electronic energy + Delta-G solvation = -29658.471310 eV Core-core repulsion = 25847.171544 eV Total energy + Delta-G solvation = -3811.299766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80832 -36.59352 -36.10494 -35.15893 -34.84316 -34.38836 -32.56912 -30.65077 -29.48971 -29.03449 -26.15217 -25.51127 -25.11048 -24.39055 -22.42168 -21.26647 -20.69765 -19.30277 -18.58937 -17.17690 -16.72100 -16.36813 -16.23558 -15.74296 -15.33002 -14.97890 -14.48736 -14.45922 -14.25981 -14.03135 -13.40326 -13.30819 -13.23271 -12.99163 -12.76457 -12.61133 -12.43852 -11.98161 -11.89555 -11.85362 -11.71884 -11.53049 -11.41209 -11.33492 -11.30856 -11.11516 -10.98026 -10.82651 -10.77251 -10.72933 -10.42649 -10.40854 -10.23995 -10.17384 -9.99232 -9.29204 -8.95651 -8.46122 -8.29517 -7.91503 -6.07063 -4.15086 1.37147 3.24799 3.32373 3.33557 3.59710 3.83187 4.26550 4.36939 4.64154 4.70034 4.82836 4.92371 5.04405 5.14137 5.16035 5.19580 5.23454 5.27457 5.33870 5.46887 5.53727 5.61205 5.69912 5.70570 5.73384 5.82309 5.88682 5.91275 5.96987 6.07790 6.12954 6.17041 6.20344 6.26673 6.37323 6.42645 6.68316 6.87370 6.90413 7.08048 7.08966 7.13731 7.41526 7.62091 7.69143 7.81834 8.07468 8.29263 8.87905 9.50952 10.98025 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.004776 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.205204 B = 5860.776135 C = 7262.266990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 N -0.526 5.526 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.115 4.115 8 C 0.080 3.920 9 H 0.053 0.947 10 C 0.129 3.871 11 N -1.113 6.113 12 S 2.784 3.216 13 O -0.984 6.984 14 O -1.003 7.003 15 N -0.991 5.991 16 C 0.099 3.901 17 C 0.268 3.732 18 H 0.059 0.941 19 C -0.146 4.146 20 C -0.521 4.521 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.896 3.104 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.417 0.583 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.012 0.988 49 H 0.032 0.968 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -1.548 13.150 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.072 4.072 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.029 4.029 9 H 0.071 0.929 10 C 0.001 3.999 11 N -0.874 5.874 12 S 2.793 3.207 13 O -0.968 6.968 14 O -0.987 6.987 15 N -0.834 5.834 16 C -0.047 4.047 17 C 0.165 3.835 18 H 0.076 0.924 19 C -0.206 4.206 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.724 3.276 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.252 0.748 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.031 0.969 49 H 0.051 0.949 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.340 -2.401 13.167 16.913 hybrid contribution -1.295 1.634 -0.156 2.090 sum -11.634 -0.767 13.010 17.470 Atomic orbital electron populations 1.22436 0.98455 1.02385 1.01767 1.22275 0.92724 0.89970 1.03652 1.62049 1.59602 1.01863 1.01560 1.22079 0.97664 0.95172 0.92327 1.21601 1.01579 0.94634 0.97769 1.21573 1.00533 0.98756 0.94925 1.21653 1.02342 0.93735 0.97568 1.21820 0.97279 0.93916 0.89931 0.92921 1.21249 0.81523 0.99876 0.97247 1.55747 1.14261 1.60875 1.56517 1.01683 0.72823 0.73384 0.72841 1.93589 1.30366 1.87024 1.85788 1.93508 1.72073 1.46801 1.86295 1.57677 1.28438 1.66661 1.30596 1.21256 0.85828 0.98291 0.99344 1.18702 0.85823 0.87515 0.91416 0.92371 1.22069 1.01003 0.97850 0.99644 1.21359 0.97943 0.98132 1.38612 0.92028 1.24922 0.94822 0.98527 0.95614 1.69879 1.07004 1.34400 1.41303 0.86550 0.79235 0.83926 0.77936 1.20721 1.21276 1.20024 0.92851 0.92313 0.92059 0.89311 0.90905 0.90998 0.94948 0.90941 0.91950 0.91751 0.92581 0.90943 0.90417 0.91010 0.91159 0.74823 0.94066 0.90750 0.92165 0.88908 0.96886 0.94874 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.13 37.16 0.34 -1.47 16 2 C 0.04 0.46 5.53 -3.83 -0.02 0.44 16 3 N -0.53 -5.94 4.34 -226.69 -0.98 -6.92 16 4 C 0.06 0.53 5.03 -3.84 -0.02 0.51 16 5 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 6 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 7 C -0.12 -1.33 5.26 -26.65 -0.14 -1.47 16 8 C 0.08 0.92 1.52 -67.72 -0.10 0.81 16 9 H 0.05 0.56 6.61 -51.93 -0.34 0.22 16 10 C 0.13 1.72 5.10 -4.04 -0.02 1.70 16 11 N -1.11 -17.64 5.58 -10.61 -0.06 -17.70 16 12 S 2.78 54.31 6.14 -107.50 -0.66 53.65 16 13 O -0.98 -22.76 16.70 -57.17 -0.95 -23.72 16 14 O -1.00 -20.08 16.20 -57.17 -0.93 -21.01 16 15 N -0.99 -20.29 3.12 -115.85 -0.36 -20.65 16 16 C 0.10 1.74 9.90 59.85 0.59 2.33 16 17 C 0.27 6.52 2.62 -69.08 -0.18 6.34 16 18 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 19 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 20 C -0.52 -13.19 8.37 -34.44 -0.29 -13.48 16 21 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 22 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 23 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 24 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.05 0.46 6.66 -51.93 -0.35 0.12 16 29 H 0.06 0.56 6.25 -51.93 -0.32 0.24 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.09 1.17 6.32 -51.93 -0.33 0.85 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.03 0.30 6.73 -51.93 -0.35 -0.05 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.01 6.90 -51.93 -0.36 0.65 16 41 H 0.07 0.94 5.97 -51.93 -0.31 0.63 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.42 6.41 7.35 -34.47 -0.25 6.15 16 44 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 46 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 47 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.03 0.73 6.66 -51.93 -0.35 0.38 16 50 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -30.14 384.36 -10.99 -41.13 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.51 Total: 6.35 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.78 Total: -68.97 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.88 Total: -44.73 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.66 Total: 53.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.14 -10.99 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.078 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds