Wall clock time and date at job start Tue Mar 31 2020 17:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47099 * 2 1 4 4 C 1.46848 * 111.00386 * 65.24743 * 3 2 1 5 5 C 1.53030 * 109.52580 * 174.16392 * 4 3 2 6 6 C 1.53118 * 109.28304 * 59.17921 * 5 4 3 7 7 C 1.53120 * 109.15681 * 302.34555 * 6 5 4 8 8 C 1.46847 * 110.99415 * 300.99873 * 3 2 1 9 9 H 1.09000 * 109.43631 * 65.80918 * 8 3 2 10 10 C 1.53002 * 109.49604 * 305.83680 * 8 3 2 11 11 N 1.46505 * 109.46934 * 305.44149 * 10 8 3 12 12 S 1.65600 * 119.99829 * 164.24134 * 11 10 8 13 13 O 1.42101 * 106.40006 * 178.54344 * 12 11 10 14 14 O 1.42096 * 106.40286 * 311.46148 * 12 11 10 15 15 N 1.65605 * 107.21884 * 65.00429 * 12 11 10 16 16 C 1.46497 * 119.99771 * 269.99968 * 15 12 11 17 17 C 1.46491 * 120.00078 * 89.99616 * 15 12 11 18 18 H 1.09004 * 109.47403 * 0.02562 * 17 15 12 19 19 C 1.53007 * 109.47073 * 120.00266 * 17 15 12 20 20 C 1.50703 * 109.47225 * 240.00056 * 17 15 12 21 21 H 1.07988 * 120.00032 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99855 * 179.97438 * 20 17 15 23 23 N 1.31514 * 120.00051 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99963 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47098 * 90.00146 * 24 22 20 26 26 H 1.48497 * 109.47106 * 210.00596 * 24 22 20 27 27 H 1.48501 * 109.46865 * 330.00219 * 24 22 20 28 28 H 1.08993 * 109.47525 * 300.00472 * 1 2 3 29 29 H 1.09001 * 109.46800 * 60.00442 * 1 2 3 30 30 H 1.09008 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47212 * 239.99111 * 2 1 3 32 32 H 1.09001 * 109.46800 * 119.99557 * 2 1 3 33 33 H 1.08998 * 109.46207 * 54.14213 * 4 3 2 34 34 H 1.09005 * 109.45345 * 294.17171 * 4 3 2 35 35 H 1.09003 * 109.50096 * 299.23627 * 5 4 3 36 36 H 1.09004 * 109.53667 * 179.13784 * 5 4 3 37 37 H 1.08994 * 109.52384 * 182.44617 * 6 5 4 38 38 H 1.08996 * 109.57636 * 62.28148 * 6 5 4 39 39 H 1.09002 * 109.50463 * 177.59014 * 7 6 5 40 40 H 1.08993 * 109.50624 * 297.67193 * 7 6 5 41 41 H 1.09000 * 109.47367 * 65.44261 * 10 8 3 42 42 H 1.09001 * 109.47326 * 185.44548 * 10 8 3 43 43 H 0.96998 * 120.00179 * 344.25131 * 11 10 8 44 44 H 1.09009 * 109.47094 * 89.99909 * 16 15 12 45 45 H 1.08997 * 109.46930 * 209.99837 * 16 15 12 46 46 H 1.09003 * 109.47460 * 329.99981 * 16 15 12 47 47 H 1.09000 * 109.46826 * 180.02562 * 19 17 15 48 48 H 1.08996 * 109.46842 * 300.00093 * 19 17 15 49 49 H 1.08999 * 109.46791 * 60.00325 * 19 17 15 50 50 H 0.96997 * 120.00289 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6539 2.0725 1.2450 5 6 2.3016 3.4587 1.2729 6 6 1.8224 4.2652 0.0628 7 6 2.1727 3.5043 -1.2189 8 6 1.5293 2.1163 -1.1752 9 1 0.4461 2.2200 -1.1119 10 6 1.8941 1.3452 -2.4453 11 7 3.3369 1.0916 -2.4653 12 16 3.9642 -0.0414 -3.4973 13 8 5.3718 -0.0256 -3.3028 14 8 3.1711 -1.2099 -3.3403 15 7 3.6991 0.5001 -5.0397 16 6 2.4648 0.1384 -5.7409 17 6 4.6989 1.3408 -5.7028 18 1 5.5420 1.5014 -5.0308 19 6 5.1869 0.6454 -6.9753 20 6 4.0814 2.6680 -6.0609 21 1 3.0478 2.8656 -5.8184 22 6 4.8364 3.6303 -6.6973 23 7 6.0953 3.3898 -6.9921 24 14 4.0712 5.2758 -7.1406 25 1 4.2579 6.2275 -6.0161 26 1 4.7271 5.8144 -8.3591 27 1 2.6203 5.0933 -7.3990 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0041 1.4907 2.0975 34 1 0.5702 2.1769 1.2971 35 1 3.3860 3.3545 1.2346 36 1 2.0179 3.9752 2.1900 37 1 2.3147 5.2376 0.0551 38 1 0.7429 4.4039 0.1207 39 1 1.7961 4.0528 -2.0822 40 1 3.2550 3.4014 -1.2968 41 1 1.3581 0.3962 -2.4608 42 1 1.6165 1.9335 -3.3200 43 1 3.9247 1.5873 -1.8740 44 1 1.7000 0.8891 -5.5409 45 1 2.6563 0.0915 -6.8129 46 1 2.1194 -0.8343 -5.3906 47 1 5.9311 1.2707 -7.4685 48 1 5.6335 -0.3146 -6.7163 49 1 4.3440 0.4845 -7.6474 50 1 6.6264 4.0666 -7.4401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337968756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:24 Heat of formation + Delta-G solvation = -100.468655 kcal Electronic energy + Delta-G solvation = -29659.393402 eV Core-core repulsion = 25847.171544 eV Total energy + Delta-G solvation = -3812.221858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.68748 -38.26610 -37.85359 -36.83845 -35.96091 -35.22583 -34.46900 -31.63625 -30.87999 -30.28544 -27.30720 -27.12546 -26.88861 -25.22728 -23.29411 -22.57345 -22.08086 -20.46012 -19.84909 -18.75612 -18.31108 -18.20971 -17.44972 -16.87817 -16.57485 -16.39157 -15.85207 -15.40658 -15.25900 -15.08219 -14.93340 -14.76740 -14.56684 -14.11752 -13.96705 -13.66268 -13.49456 -13.39757 -13.39335 -13.17663 -13.11448 -12.88281 -12.87653 -12.74813 -12.66900 -12.61200 -12.58576 -12.27352 -12.21668 -12.10564 -11.83440 -11.60181 -11.55629 -11.23169 -11.16658 -11.01459 -10.46571 -10.28564 -9.60862 -9.11668 -8.05325 -6.19758 -0.20115 1.47110 1.48710 1.57580 2.10326 2.48592 2.67338 3.01004 3.23292 3.51061 3.74484 3.84069 4.01646 4.12570 4.17482 4.26969 4.35247 4.39420 4.41167 4.55644 4.58629 4.65900 4.68854 4.76032 4.84154 4.86960 4.90417 4.93869 4.97205 4.99751 5.07066 5.11022 5.14999 5.19642 5.20343 5.23073 5.30736 5.33405 5.37550 5.55150 5.64556 5.74825 5.89407 6.10740 6.19967 6.27820 6.31561 6.34417 6.89563 7.49775 8.99333 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.004776 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.205204 B = 5860.776135 C = 7262.266990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.041 3.959 3 N -0.541 5.541 4 C 0.056 3.944 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.087 3.913 9 H 0.070 0.930 10 C 0.123 3.877 11 N -1.103 6.103 12 S 2.799 3.201 13 O -1.024 7.024 14 O -1.007 7.007 15 N -0.997 5.997 16 C 0.094 3.906 17 C 0.274 3.726 18 H 0.022 0.978 19 C -0.140 4.140 20 C -0.522 4.522 21 H 0.070 0.930 22 C 0.015 3.985 23 N -0.920 5.920 24 Si 0.958 3.042 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.263 1.263 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.419 0.581 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.017 0.983 49 H 0.046 0.954 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.917 -0.762 14.118 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.087 4.087 3 N -0.266 5.266 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.022 4.022 9 H 0.087 0.913 10 C -0.004 4.004 11 N -0.866 5.866 12 S 2.808 3.192 13 O -1.009 7.009 14 O -0.991 6.991 15 N -0.838 5.838 16 C -0.052 4.052 17 C 0.169 3.831 18 H 0.040 0.960 19 C -0.200 4.200 20 C -0.562 4.562 21 H 0.088 0.912 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.784 3.216 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.188 1.188 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.965 -1.633 14.139 19.252 hybrid contribution -0.503 1.338 -0.400 1.484 sum -13.467 -0.295 13.739 19.241 Atomic orbital electron populations 1.22368 0.96935 1.02877 1.02211 1.22228 0.93993 0.89755 1.02727 1.62024 1.60249 1.02084 1.02203 1.22124 0.98311 0.95119 0.91548 1.21592 1.00691 0.94682 0.98385 1.21547 1.01287 0.98532 0.94009 1.21656 1.01045 0.94184 0.98643 1.21742 0.98071 0.93340 0.89075 0.91251 1.21478 0.79653 1.00569 0.98687 1.55435 1.15613 1.60196 1.55383 1.01077 0.71787 0.73606 0.72766 1.93529 1.33274 1.87717 1.86334 1.93495 1.71817 1.47396 1.86362 1.57558 1.28854 1.66231 1.31201 1.21462 0.84927 0.99731 0.99057 1.18367 0.85711 0.88163 0.90835 0.96018 1.21960 1.00893 0.97506 0.99652 1.21600 0.98199 0.98447 1.37919 0.91187 1.25689 0.95163 1.01841 0.95755 1.70024 1.08323 1.35400 1.42209 0.85558 0.78861 0.79840 0.77319 1.20520 1.21617 1.18773 0.91729 0.92424 0.91619 0.91728 0.90395 0.90394 0.93874 0.92337 0.90093 0.91625 0.91361 0.91260 0.92414 0.90530 0.90963 0.74478 0.92210 0.90930 0.90597 0.91226 0.96391 0.93500 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 9.13 71.98 0.66 -2.39 16 2 C 0.04 0.85 5.53 86.31 0.48 1.32 16 3 N -0.54 -11.34 4.34 -871.12 -3.78 -15.12 16 4 C 0.06 0.94 5.03 86.32 0.43 1.37 16 5 C -0.12 -1.89 6.09 30.64 0.19 -1.71 16 6 C -0.12 -2.02 6.00 30.67 0.18 -1.84 16 7 C -0.12 -2.56 5.26 30.65 0.16 -2.40 16 8 C 0.09 1.85 1.52 44.94 0.07 1.92 16 9 H 0.07 1.27 6.61 -2.39 -0.02 1.26 16 10 C 0.12 3.13 5.10 86.38 0.44 3.57 16 11 N -1.10 -34.78 5.58 -187.47 -1.05 -35.82 16 12 S 2.80 109.69 6.14 -56.49 -0.35 109.34 16 13 O -1.02 -48.81 16.70 -128.00 -2.14 -50.95 16 14 O -1.01 -39.74 16.20 -128.00 -2.07 -41.81 16 15 N -1.00 -40.50 3.12 -520.44 -1.62 -42.13 16 16 C 0.09 3.13 9.90 127.77 1.26 4.40 16 17 C 0.27 13.46 2.62 44.25 0.12 13.58 16 18 H 0.02 1.24 6.91 -2.38 -0.02 1.22 16 19 C -0.14 -6.78 8.95 71.98 0.64 -6.13 16 20 C -0.52 -26.25 8.37 25.60 0.21 -26.04 16 21 H 0.07 3.33 7.65 -2.92 -0.02 3.31 16 22 C 0.01 0.77 5.30 84.66 0.45 1.22 16 23 N -0.92 -51.25 11.32 21.45 0.24 -51.01 16 24 Si 0.96 41.11 29.54 68.60 2.03 43.13 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 H 0.06 0.92 6.66 -2.39 -0.02 0.91 16 29 H 0.06 0.96 6.25 -2.39 -0.01 0.94 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 32 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 34 H 0.04 0.64 6.73 -2.38 -0.02 0.63 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.48 6.90 -2.39 -0.02 1.47 16 41 H 0.08 1.90 5.97 -2.39 -0.01 1.88 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.42 13.06 7.35 -96.75 -0.71 12.35 16 44 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 2.44 6.43 -2.39 -0.02 2.43 16 46 H 0.08 2.29 7.02 -2.39 -0.02 2.27 16 47 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 2.07 6.66 -2.39 -0.02 2.05 16 50 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -64.19 384.36 -3.23 -67.42 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.22 Total: 30.07 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.30 Total: -13.13 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -6.21 Total: -144.08 kcal Atomic # 8 Polarization: -88.54 SS G_CDS: -4.21 Total: -92.76 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 109.69 SS G_CDS: -0.35 Total: 109.34 kcal Total: -64.19 -3.23 -67.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337968756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.046 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds