Wall clock time and date at job start Tue Mar 31 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00160 * 2 1 4 4 C 1.50703 * 109.46925 * 275.56913 * 3 2 1 5 5 H 1.07996 * 120.00331 * 4.70963 * 4 3 2 6 6 C 1.37881 * 119.99701 * 184.71611 * 4 3 2 7 7 N 1.31509 * 120.00024 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46829 * 59.99819 * 8 6 4 10 10 H 1.48500 * 109.47127 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47361 * 300.00230 * 8 6 4 12 12 S 1.65601 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40585 * 159.57232 * 12 2 1 14 14 O 1.42103 * 106.40291 * 26.65632 * 12 2 1 15 15 N 1.65604 * 107.22168 * 273.11532 * 12 2 1 16 16 C 1.46492 * 119.99738 * 62.77122 * 15 12 2 17 17 C 1.53003 * 109.47183 * 164.44775 * 16 15 12 18 18 C 1.52998 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47243 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47243 * 179.97438 * 19 18 17 21 21 N 1.46907 * 109.46904 * 179.97438 * 20 19 18 22 22 C 1.48531 * 110.99615 * 52.60615 * 21 20 19 23 23 C 1.54940 * 103.22521 * 159.71930 * 22 21 20 24 24 C 1.54595 * 102.92248 * 322.58253 * 23 22 21 25 25 C 1.47900 * 110.99923 * 170.00046 * 21 20 19 26 26 H 1.08990 * 109.47206 * 270.00030 * 1 2 3 27 27 H 1.08998 * 109.46458 * 30.00542 * 1 2 3 28 28 H 1.09003 * 109.46672 * 150.00080 * 1 2 3 29 29 H 1.08994 * 109.47223 * 35.56780 * 3 2 1 30 30 H 1.09000 * 109.47198 * 155.57368 * 3 2 1 31 31 H 0.97010 * 119.99897 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99659 * 242.77126 * 15 12 2 33 33 H 1.09008 * 109.47528 * 44.44840 * 16 15 12 34 34 H 1.09004 * 109.47551 * 284.44951 * 16 15 12 35 35 H 1.08998 * 109.46746 * 59.99805 * 17 16 15 36 36 H 1.09004 * 109.46758 * 300.00018 * 17 16 15 37 37 H 1.09004 * 109.47287 * 299.99730 * 18 17 16 38 38 H 1.08998 * 109.47380 * 60.00229 * 18 17 16 39 39 H 1.09004 * 109.46758 * 300.00054 * 19 18 17 40 40 H 1.08998 * 109.46746 * 59.99841 * 19 18 17 41 41 H 1.08994 * 109.47211 * 299.99781 * 20 19 18 42 42 H 1.08998 * 109.47380 * 60.00229 * 20 19 18 43 43 H 1.09005 * 110.66620 * 278.14936 * 22 21 20 44 44 H 1.09002 * 110.67356 * 41.28431 * 22 21 20 45 45 H 1.09003 * 110.72643 * 204.22427 * 23 22 21 46 46 H 1.09005 * 110.72321 * 80.94051 * 23 22 21 47 47 H 1.08998 * 110.31175 * 263.04147 * 24 23 22 48 48 H 1.08995 * 110.30808 * 140.87104 * 24 23 22 49 49 H 1.09012 * 109.91421 * 333.51226 * 25 21 20 50 50 H 1.08994 * 109.91713 * 94.60170 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7726 -1.4142 5 1 1.8448 1.2455 -2.2227 6 6 3.0685 2.9067 -1.6758 7 7 3.6591 3.5483 -0.6913 8 14 3.2324 3.5310 -3.4288 9 1 1.8860 3.8477 -3.9693 10 1 4.0712 4.7564 -3.4414 11 1 3.8698 2.4855 -4.2690 12 16 2.2930 -1.4341 0.0006 13 8 3.6000 -1.1432 -0.4753 14 8 1.4386 -2.3911 -0.6105 15 7 2.4638 -1.9010 1.5803 16 6 1.2784 -2.1952 2.3893 17 6 1.6963 -2.9590 3.6474 18 6 0.4584 -3.2657 4.4926 19 6 0.8762 -4.0301 5.7505 20 6 -0.3616 -4.3362 6.5960 21 7 0.0396 -5.0707 7.8034 22 6 1.1196 -4.3535 8.5283 23 6 1.0375 -4.9422 9.9592 24 6 -0.4833 -5.1181 10.1739 25 6 -1.0853 -5.1765 8.7577 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6553 2.0013 0.5977 30 1 3.1895 1.1155 0.4250 31 1 4.1789 4.3465 -0.8754 32 1 3.3485 -1.9797 1.9698 33 1 0.5841 -2.8031 1.8090 34 1 0.7928 -1.2621 2.6752 35 1 2.3905 -2.3512 4.2276 36 1 2.1818 -3.8921 3.3614 37 1 -0.0267 -2.3324 4.7786 38 1 -0.2361 -3.8734 3.9127 39 1 1.3611 -4.9634 5.4641 40 1 1.5710 -3.4228 6.3306 41 1 -0.8460 -3.4028 6.8823 42 1 -1.0567 -4.9433 6.0161 43 1 2.0903 -4.5657 8.0802 44 1 0.9272 -3.2807 8.5421 45 1 1.4517 -4.2450 10.6875 46 1 1.5481 -5.9039 10.0105 47 1 -0.8888 -4.2681 10.7227 48 1 -0.6850 -6.0459 10.7092 49 1 -1.7747 -4.3446 8.6127 50 1 -1.6084 -6.1215 8.6119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339035759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:23 Heat of formation + Delta-G solvation = -92.204908 kcal Electronic energy + Delta-G solvation = -26624.014835 eV Core-core repulsion = 22812.151320 eV Total energy + Delta-G solvation = -3811.863515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.41603 -36.90631 -36.45067 -35.46576 -35.11300 -34.54983 -32.42203 -32.03465 -29.44561 -28.65288 -27.75639 -25.12682 -24.93600 -22.64803 -22.27364 -21.64907 -21.09171 -20.60098 -18.79346 -17.23074 -16.69671 -16.51325 -16.40214 -16.28029 -15.99894 -15.72408 -14.95441 -14.82951 -14.35865 -14.24406 -13.65555 -13.51859 -13.41494 -13.26017 -12.96081 -12.68944 -12.43582 -12.21244 -12.12993 -11.97791 -11.80132 -11.73455 -11.57592 -11.51361 -11.41752 -11.28233 -11.17813 -11.13812 -11.03696 -10.99113 -10.76516 -10.71881 -10.67614 -10.46908 -10.02870 -9.76577 -9.26508 -8.80976 -8.42955 -8.04788 -6.05251 -4.09404 1.28218 3.34441 3.37996 3.42512 3.52384 3.61678 4.17412 4.20807 4.28167 4.45819 4.50416 4.60952 4.68245 4.78379 4.86401 4.95776 5.05138 5.09947 5.19149 5.19364 5.27256 5.29717 5.34766 5.37949 5.41471 5.44037 5.55658 5.59842 5.61227 5.64473 5.66007 5.76626 5.80057 5.81876 5.98845 6.04280 6.11129 6.19474 6.33229 6.49176 6.57583 6.66402 7.12961 7.29090 7.43663 7.64859 7.92241 8.21982 8.92836 9.55791 11.03322 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.001865 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.632269 B =15006.751974 C =15368.084283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.257 3.743 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.783 3.217 13 O -0.965 6.965 14 O -0.999 6.999 15 N -1.136 6.136 16 C 0.120 3.880 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.119 4.119 20 C 0.046 3.954 21 N -0.520 5.520 22 C 0.032 3.968 23 C -0.126 4.126 24 C -0.132 4.132 25 C 0.034 3.966 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 -15.520 21.076 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.983 6.983 15 N -0.895 5.895 16 C -0.007 4.007 17 C -0.164 4.164 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.082 4.082 21 N -0.244 5.244 22 C -0.095 4.095 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.325 -16.317 20.083 27.182 hybrid contribution 0.038 1.535 -0.168 1.545 sum -8.287 -14.782 19.915 26.149 Atomic orbital electron populations 1.21369 0.80360 1.03494 1.00051 1.57592 1.14192 1.23327 1.88762 1.19053 0.91209 0.78656 0.97582 1.21470 1.31848 1.10327 0.93452 0.92195 1.24940 0.95015 0.96543 0.97511 1.69910 1.33163 1.18945 1.31392 0.86566 0.78114 0.78142 0.84667 1.20183 1.21167 1.19999 1.01900 0.73331 0.72890 0.72849 1.93640 1.38694 1.84582 1.77957 1.93518 1.69058 1.61139 1.74543 1.56239 1.13961 1.85871 1.33387 1.21209 0.87372 0.99467 0.92626 1.21765 0.98287 1.00812 0.95495 1.21510 0.97817 1.00529 0.95828 1.21653 0.97271 1.00890 0.95859 1.22355 0.97830 0.96327 0.91727 1.64823 1.07454 1.47055 1.05085 1.23259 0.96400 0.96243 0.93613 1.22500 0.96061 1.01587 0.96229 1.22401 0.95870 1.02212 0.96533 1.22881 0.93473 1.01545 0.91514 0.94408 0.90439 0.91620 0.95075 0.93971 0.92641 0.75583 0.90816 0.92020 0.91262 0.91120 0.91647 0.91393 0.90971 0.91812 0.94626 0.90508 0.89815 0.93642 0.91069 0.90718 0.91561 0.91011 0.93778 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.69 59.85 0.64 2.23 16 2 N -1.00 -20.62 3.23 -123.06 -0.40 -21.02 16 3 C 0.26 6.47 5.10 -5.19 -0.03 6.45 16 4 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 S 2.78 55.21 6.09 -107.50 -0.65 54.55 16 13 O -0.96 -23.29 16.99 -57.17 -0.97 -24.26 16 14 O -1.00 -20.93 16.34 -57.17 -0.93 -21.87 16 15 N -1.14 -16.54 6.05 -10.61 -0.06 -16.61 16 16 C 0.12 1.41 6.26 -4.04 -0.03 1.38 16 17 C -0.12 -1.13 5.36 -26.73 -0.14 -1.27 16 18 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 19 C -0.12 -0.87 4.87 -26.73 -0.13 -1.00 16 20 C 0.05 0.34 5.03 -3.82 -0.02 0.32 16 21 N -0.52 -4.10 5.40 -230.45 -1.24 -5.34 16 22 C 0.03 0.23 5.10 -1.90 -0.01 0.22 16 23 C -0.13 -0.74 7.06 -24.87 -0.18 -0.91 16 24 C -0.13 -0.74 6.93 -25.37 -0.18 -0.92 16 25 C 0.03 0.23 6.70 -2.75 -0.02 0.21 16 26 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 27 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.07 1.05 7.05 -51.93 -0.37 0.69 16 29 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.41 5.28 8.66 -34.47 -0.30 4.98 16 33 H 0.07 0.87 7.79 -51.92 -0.40 0.47 16 34 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.47 6.79 -51.93 -0.35 0.11 16 41 H 0.04 0.26 7.81 -51.93 -0.41 -0.14 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 44 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.04 0.29 7.57 -51.92 -0.39 -0.11 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -34.18 408.19 -12.34 -46.51 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -9.30 Total: -1.49 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.64 Total: -8.03 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.97 Total: -68.53 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.91 Total: -46.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 55.21 SS G_CDS: -0.65 Total: 54.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.18 -12.34 -46.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339035759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.692 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds