Wall clock time and date at job start Tue Mar 31 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00160 * 2 1 4 4 C 1.50703 * 109.46925 * 275.56913 * 3 2 1 5 5 H 1.07996 * 120.00331 * 4.70963 * 4 3 2 6 6 C 1.37881 * 119.99701 * 184.71611 * 4 3 2 7 7 N 1.31509 * 120.00024 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46829 * 59.99819 * 8 6 4 10 10 H 1.48500 * 109.47127 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47361 * 300.00230 * 8 6 4 12 12 S 1.65601 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.42099 * 106.40585 * 159.57232 * 12 2 1 14 14 O 1.42103 * 106.40291 * 26.65632 * 12 2 1 15 15 N 1.65604 * 107.22168 * 273.11532 * 12 2 1 16 16 C 1.46492 * 119.99738 * 62.77122 * 15 12 2 17 17 C 1.53003 * 109.47183 * 164.44775 * 16 15 12 18 18 C 1.52998 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47243 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47243 * 179.97438 * 19 18 17 21 21 N 1.46907 * 109.46904 * 179.97438 * 20 19 18 22 22 C 1.48531 * 110.99615 * 52.60615 * 21 20 19 23 23 C 1.54940 * 103.22521 * 159.71930 * 22 21 20 24 24 C 1.54595 * 102.92248 * 322.58253 * 23 22 21 25 25 C 1.47900 * 110.99923 * 170.00046 * 21 20 19 26 26 H 1.08990 * 109.47206 * 270.00030 * 1 2 3 27 27 H 1.08998 * 109.46458 * 30.00542 * 1 2 3 28 28 H 1.09003 * 109.46672 * 150.00080 * 1 2 3 29 29 H 1.08994 * 109.47223 * 35.56780 * 3 2 1 30 30 H 1.09000 * 109.47198 * 155.57368 * 3 2 1 31 31 H 0.97010 * 119.99897 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99659 * 242.77126 * 15 12 2 33 33 H 1.09008 * 109.47528 * 44.44840 * 16 15 12 34 34 H 1.09004 * 109.47551 * 284.44951 * 16 15 12 35 35 H 1.08998 * 109.46746 * 59.99805 * 17 16 15 36 36 H 1.09004 * 109.46758 * 300.00018 * 17 16 15 37 37 H 1.09004 * 109.47287 * 299.99730 * 18 17 16 38 38 H 1.08998 * 109.47380 * 60.00229 * 18 17 16 39 39 H 1.09004 * 109.46758 * 300.00054 * 19 18 17 40 40 H 1.08998 * 109.46746 * 59.99841 * 19 18 17 41 41 H 1.08994 * 109.47211 * 299.99781 * 20 19 18 42 42 H 1.08998 * 109.47380 * 60.00229 * 20 19 18 43 43 H 1.09005 * 110.66620 * 278.14936 * 22 21 20 44 44 H 1.09002 * 110.67356 * 41.28431 * 22 21 20 45 45 H 1.09003 * 110.72643 * 204.22427 * 23 22 21 46 46 H 1.09005 * 110.72321 * 80.94051 * 23 22 21 47 47 H 1.08998 * 110.31175 * 263.04147 * 24 23 22 48 48 H 1.08995 * 110.30808 * 140.87104 * 24 23 22 49 49 H 1.09012 * 109.91421 * 333.51226 * 25 21 20 50 50 H 1.08994 * 109.91713 * 94.60170 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7726 -1.4142 5 1 1.8448 1.2455 -2.2227 6 6 3.0685 2.9067 -1.6758 7 7 3.6591 3.5483 -0.6913 8 14 3.2324 3.5310 -3.4288 9 1 1.8860 3.8477 -3.9693 10 1 4.0712 4.7564 -3.4414 11 1 3.8698 2.4855 -4.2690 12 16 2.2930 -1.4341 0.0006 13 8 3.6000 -1.1432 -0.4753 14 8 1.4386 -2.3911 -0.6105 15 7 2.4638 -1.9010 1.5803 16 6 1.2784 -2.1952 2.3893 17 6 1.6963 -2.9590 3.6474 18 6 0.4584 -3.2657 4.4926 19 6 0.8762 -4.0301 5.7505 20 6 -0.3616 -4.3362 6.5960 21 7 0.0396 -5.0707 7.8034 22 6 1.1196 -4.3535 8.5283 23 6 1.0375 -4.9422 9.9592 24 6 -0.4833 -5.1181 10.1739 25 6 -1.0853 -5.1765 8.7577 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6553 2.0013 0.5977 30 1 3.1895 1.1155 0.4250 31 1 4.1789 4.3465 -0.8754 32 1 3.3485 -1.9797 1.9698 33 1 0.5841 -2.8031 1.8090 34 1 0.7928 -1.2621 2.6752 35 1 2.3905 -2.3512 4.2276 36 1 2.1818 -3.8921 3.3614 37 1 -0.0267 -2.3324 4.7786 38 1 -0.2361 -3.8734 3.9127 39 1 1.3611 -4.9634 5.4641 40 1 1.5710 -3.4228 6.3306 41 1 -0.8460 -3.4028 6.8823 42 1 -1.0567 -4.9433 6.0161 43 1 2.0903 -4.5657 8.0802 44 1 0.9272 -3.2807 8.5421 45 1 1.4517 -4.2450 10.6875 46 1 1.5481 -5.9039 10.0105 47 1 -0.8888 -4.2681 10.7227 48 1 -0.6850 -6.0459 10.7092 49 1 -1.7747 -4.3446 8.6127 50 1 -1.6084 -6.1215 8.6119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339035759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:22 Heat of formation + Delta-G solvation = -117.322565 kcal Electronic energy + Delta-G solvation = -26625.104018 eV Core-core repulsion = 22812.151320 eV Total energy + Delta-G solvation = -3812.952698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.94088 -38.30647 -37.61013 -37.18580 -36.82760 -35.36875 -34.49942 -32.72997 -30.00519 -29.65564 -29.33588 -26.78290 -25.74595 -24.20290 -23.31118 -22.34251 -21.63162 -21.15554 -20.26782 -18.92392 -18.42846 -18.14093 -17.36864 -17.08236 -16.79631 -16.67784 -16.53448 -15.94013 -15.56399 -15.07490 -14.95577 -14.88409 -14.34389 -14.09826 -14.04491 -13.86029 -13.73511 -13.47738 -13.31464 -13.16279 -13.02997 -13.00258 -12.91850 -12.77281 -12.60164 -12.47268 -12.35313 -12.27214 -12.04651 -12.01696 -11.92186 -11.80315 -11.76801 -11.55702 -11.44362 -11.32053 -10.60323 -10.42914 -9.77032 -9.36590 -8.20480 -6.32574 -0.28471 1.39012 1.42754 1.49778 2.07805 2.40467 2.67821 3.04508 3.10563 3.48714 3.69995 3.80149 3.93611 4.00872 4.03176 4.13442 4.14465 4.26651 4.35923 4.46067 4.50349 4.59554 4.63034 4.67691 4.72547 4.76535 4.82180 4.87943 4.93048 4.97287 4.98309 5.00536 5.07115 5.08189 5.09844 5.20363 5.21133 5.27265 5.32546 5.43670 5.46199 5.50417 5.70568 5.88568 5.96895 6.09739 6.12120 6.19339 6.75870 7.36318 8.86857 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.001865 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.632269 B =15006.751974 C =15368.084283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.272 3.728 4 C -0.553 4.553 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.278 1.278 12 S 2.799 3.201 13 O -1.014 7.014 14 O -1.011 7.011 15 N -1.121 6.121 16 C 0.110 3.890 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.112 4.112 20 C 0.047 3.953 21 N -0.535 5.535 22 C 0.031 3.969 23 C -0.125 4.125 24 C -0.130 4.130 25 C 0.030 3.970 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.421 0.579 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 -15.880 21.913 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.593 4.593 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.204 1.204 12 S 2.807 3.193 13 O -0.998 6.998 14 O -0.994 6.994 15 N -0.884 5.884 16 C -0.015 4.015 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.081 4.081 21 N -0.259 5.259 22 C -0.097 4.097 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.098 4.098 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.343 -16.687 20.921 28.345 hybrid contribution 0.299 1.562 -0.348 1.628 sum -9.044 -15.124 20.573 27.089 Atomic orbital electron populations 1.21617 0.78124 1.03582 1.02567 1.57461 1.15717 1.21885 1.89411 1.18608 0.90545 0.80240 0.95827 1.21845 1.31965 1.10663 0.94781 0.92860 1.25770 0.94740 0.96836 1.01521 1.70002 1.33687 1.19374 1.33235 0.85630 0.78749 0.77638 0.79820 1.18718 1.20121 1.20379 1.01154 0.71955 0.72471 0.73718 1.93569 1.41173 1.85209 1.79839 1.93498 1.69110 1.61148 1.75674 1.55787 1.15641 1.85081 1.31926 1.21531 0.86243 1.00518 0.93248 1.21727 0.99080 1.00548 0.94387 1.21463 0.97139 1.00918 0.95636 1.21566 0.97218 1.00514 0.95678 1.22325 0.97753 0.96292 0.91698 1.64820 1.08095 1.47443 1.05570 1.23279 0.96062 0.96141 0.94209 1.22513 0.96321 1.01659 0.95817 1.22411 0.95573 1.02879 0.95988 1.22933 0.93292 1.01556 0.91971 0.90668 0.91200 0.90694 0.95415 0.96324 0.92369 0.74365 0.90628 0.90968 0.90716 0.90961 0.91079 0.91014 0.91571 0.91757 0.94589 0.90590 0.90040 0.93787 0.90062 0.90943 0.90903 0.90353 0.93727 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.79 10.69 127.77 1.37 4.16 16 2 N -1.00 -41.11 3.23 -543.24 -1.75 -42.86 16 3 C 0.27 13.83 5.10 85.63 0.44 14.26 16 4 C -0.55 -31.61 9.38 25.60 0.24 -31.37 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.63 5.46 84.66 0.46 1.09 16 7 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 8 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 9 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 S 2.80 110.26 6.09 -56.49 -0.34 109.92 16 13 O -1.01 -49.83 16.99 -128.00 -2.17 -52.01 16 14 O -1.01 -41.53 16.34 -128.00 -2.09 -43.62 16 15 N -1.12 -31.35 6.05 -187.49 -1.13 -32.48 16 16 C 0.11 2.35 6.26 86.38 0.54 2.89 16 17 C -0.12 -1.90 5.36 30.59 0.16 -1.73 16 18 C -0.11 -1.48 5.21 30.59 0.16 -1.32 16 19 C -0.11 -1.47 4.87 30.59 0.15 -1.32 16 20 C 0.05 0.64 5.03 86.30 0.43 1.07 16 21 N -0.53 -7.84 5.40 -883.00 -4.76 -12.61 16 22 C 0.03 0.39 5.10 86.65 0.44 0.84 16 23 C -0.13 -1.30 7.06 31.80 0.22 -1.08 16 24 C -0.13 -1.28 6.93 31.47 0.22 -1.06 16 25 C 0.03 0.37 6.70 86.45 0.58 0.95 16 26 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 27 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.07 2.28 7.05 -2.39 -0.02 2.26 16 29 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 30 H 0.02 1.03 7.50 -2.39 -0.02 1.02 16 31 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 32 H 0.42 10.38 8.66 -96.76 -0.84 9.54 16 33 H 0.08 1.62 7.79 -2.38 -0.02 1.60 16 34 H 0.07 1.42 8.05 -2.38 -0.02 1.40 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 0.84 6.79 -2.39 -0.02 0.83 16 41 H 0.04 0.48 7.81 -2.39 -0.02 0.46 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.05 7.67 -2.38 -0.02 1.03 16 44 H 0.04 0.57 8.00 -2.39 -0.02 0.55 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.04 0.53 7.57 -2.38 -0.02 0.51 16 50 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.83 408.19 -4.48 -77.31 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.06 Total: 16.29 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.42 Total: -12.61 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -7.37 Total: -142.27 kcal Atomic # 8 Polarization: -91.36 SS G_CDS: -4.27 Total: -95.62 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 110.26 SS G_CDS: -0.34 Total: 109.92 kcal Total: -72.83 -4.48 -77.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339035759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.014 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds