Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99649 * 2 1 4 4 C 1.50706 * 109.46832 * 274.99824 * 3 2 1 5 5 H 1.07998 * 120.00229 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00288 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99768 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47354 * 59.99458 * 8 6 4 10 10 H 1.48497 * 109.47249 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47372 * 300.00037 * 8 6 4 12 12 S 1.65597 * 120.00238 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40239 * 156.46162 * 12 2 1 14 14 O 1.42103 * 106.40253 * 23.54605 * 12 2 1 15 15 N 1.65591 * 107.22042 * 270.00121 * 12 2 1 16 16 C 1.46498 * 120.00456 * 269.99973 * 15 12 2 17 17 C 1.52994 * 109.47296 * 265.00172 * 16 15 12 18 18 C 1.53005 * 109.47222 * 179.97438 * 17 16 15 19 19 N 1.46899 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.46505 * 119.99950 * 90.00082 * 15 12 2 21 21 C 1.52997 * 109.47212 * 265.00044 * 20 15 12 22 22 C 1.54267 * 110.03373 * 292.90986 * 21 20 15 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.68906 * 21 20 15 26 26 H 1.08999 * 109.47218 * 269.99847 * 1 2 3 27 27 H 1.09003 * 109.47448 * 30.00582 * 1 2 3 28 28 H 1.08998 * 109.46719 * 150.00030 * 1 2 3 29 29 H 1.09001 * 109.47206 * 34.99634 * 3 2 1 30 30 H 1.09003 * 109.47216 * 154.99693 * 3 2 1 31 31 H 0.96996 * 120.00453 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46835 * 25.00228 * 16 15 12 33 33 H 1.09001 * 109.47298 * 144.99801 * 16 15 12 34 34 H 1.08999 * 109.47223 * 299.99818 * 17 16 15 35 35 H 1.09001 * 109.47250 * 59.99599 * 17 16 15 36 36 H 1.08999 * 109.47193 * 300.00228 * 18 17 16 37 37 H 1.09001 * 109.47015 * 59.99847 * 18 17 16 38 38 H 1.00903 * 110.99976 * 179.97438 * 19 18 17 39 39 H 1.00903 * 111.00346 * 303.95585 * 19 18 17 40 40 H 1.09002 * 109.47068 * 25.00104 * 20 15 12 41 41 H 1.09001 * 109.47372 * 145.00192 * 20 15 12 42 42 H 1.09004 * 110.01939 * 54.29375 * 21 20 15 43 43 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 44 44 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 45 45 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 46 46 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 47 47 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 48 48 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 49 49 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 50 50 H 1.09004 * 110.03196 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9289 1.1934 -2.2333 6 6 3.0005 2.9504 -1.6665 7 7 3.5032 3.6470 -0.6707 8 14 3.1795 3.5660 -3.4210 9 1 1.8333 3.7719 -4.0132 10 1 3.9218 4.8521 -3.4211 11 1 3.9252 2.5635 -4.2237 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4114 -2.4067 -0.5435 15 7 2.5381 -1.8579 1.5825 16 6 3.7452 -1.4111 2.2821 17 6 4.8135 -2.5036 2.2047 18 6 6.0744 -2.0366 2.9349 19 7 7.0998 -3.0859 2.8611 20 6 1.5478 -2.6799 2.2825 21 6 0.5872 -1.7736 3.0551 22 6 1.3366 -1.0652 4.2025 23 6 0.3066 -1.0242 5.3596 24 6 -0.4091 -2.3916 5.2297 25 6 -0.5226 -2.6163 3.7077 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6500 2.0044 0.5894 30 1 3.1857 1.1178 0.4344 31 1 3.9666 4.4807 -0.8473 32 1 4.1211 -0.5016 1.8134 33 1 3.5064 -1.2096 3.3264 34 1 4.4376 -3.4131 2.6734 35 1 5.0523 -2.7050 1.1605 36 1 6.4501 -1.1272 2.4658 37 1 5.8359 -1.8349 3.9791 38 1 7.9433 -2.8012 3.3361 39 1 6.7525 -3.9577 3.2317 40 1 0.9870 -3.2694 1.5573 41 1 2.0561 -3.3475 2.9782 42 1 0.1493 -1.0352 2.3834 43 1 2.2161 -1.6388 4.4951 44 1 1.6199 -0.0551 3.9068 45 1 -0.3981 -0.2046 5.2196 46 1 0.8077 -0.9405 6.3239 47 1 -1.3991 -2.3487 5.6839 48 1 0.1862 -3.1811 5.6885 49 1 -1.4992 -2.2864 3.3534 50 1 -0.3771 -3.6709 3.4737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342904293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -93.372950 kcal Electronic energy + Delta-G solvation = -29342.480813 eV Core-core repulsion = 25530.566648 eV Total energy + Delta-G solvation = -3811.914165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.87220 -36.82952 -36.38409 -35.45534 -35.08702 -34.66172 -32.41736 -30.97694 -28.92723 -28.68024 -27.75228 -25.18992 -25.01647 -23.26584 -22.20155 -21.36810 -20.66943 -19.81923 -18.27644 -17.31026 -16.74410 -16.43184 -16.29214 -15.94167 -15.45037 -15.13807 -15.01082 -14.65960 -14.25333 -13.93762 -13.82761 -13.47689 -13.37297 -13.24229 -12.64267 -12.35499 -12.20262 -12.15828 -12.06760 -11.83828 -11.59729 -11.40176 -11.33128 -11.19737 -11.15112 -11.04433 -11.04098 -11.01823 -10.76962 -10.69089 -10.68030 -10.53881 -10.34160 -10.28648 -10.00324 -9.74004 -8.80266 -8.75448 -8.41930 -8.01907 -6.05029 -4.08717 1.23685 3.35147 3.38505 3.43359 3.48448 4.09730 4.46063 4.47862 4.53114 4.58311 4.64241 4.92845 4.95589 5.10105 5.22570 5.26623 5.30345 5.36381 5.39069 5.46829 5.49482 5.49872 5.58944 5.66832 5.69164 5.74414 5.81561 5.84854 5.86905 5.92060 5.95674 6.04253 6.08252 6.21213 6.23943 6.27307 6.38740 6.43143 6.47360 6.56989 6.86698 7.04777 7.23938 7.33332 7.42781 7.63233 7.92646 8.22326 8.93279 9.56459 11.03441 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.004670 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.702732 B = 5994.821809 C = 7254.016223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.260 3.740 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.777 3.223 13 O -0.959 6.959 14 O -0.998 6.998 15 N -1.007 6.007 16 C 0.121 3.879 17 C -0.137 4.137 18 C 0.063 3.937 19 N -0.851 5.851 20 C 0.125 3.875 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.118 4.118 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.340 0.660 39 H 0.337 0.663 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -11.989 14.953 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.138 3.862 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.786 3.214 13 O -0.942 6.942 14 O -0.982 6.982 15 N -0.843 5.843 16 C -0.005 4.005 17 C -0.177 4.177 18 C -0.068 4.068 19 N -0.380 5.380 20 C -0.001 4.001 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.157 4.157 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.543 -12.182 13.433 18.477 hybrid contribution -0.066 0.717 0.476 0.863 sum -3.610 -11.465 13.909 18.383 Atomic orbital electron populations 1.21384 0.80422 1.03373 1.00022 1.57666 1.14164 1.23372 1.88589 1.19015 0.90818 0.78827 0.97558 1.21457 1.36105 1.06285 0.92945 0.92312 1.24908 0.95081 0.96479 0.97407 1.69900 1.37345 1.15335 1.30954 0.86597 0.78296 0.78005 0.84805 1.20209 1.21171 1.19967 1.02141 0.73488 0.72830 0.72937 1.93633 1.40272 1.84808 1.75514 1.93497 1.67538 1.60447 1.76743 1.58216 1.28264 1.65318 1.32495 1.21310 0.83477 0.97162 0.98552 1.22005 0.94239 0.98779 1.02672 1.21731 0.91951 0.95363 0.97758 1.58646 1.07836 1.06174 1.65370 1.21431 0.89484 0.92481 0.96702 1.22414 0.95778 0.98168 0.97695 1.22501 0.97624 1.00877 0.94384 1.22525 0.98196 0.97298 0.98355 1.22340 1.00156 0.97413 0.96148 1.22145 0.98538 0.99975 0.95018 0.94238 0.90455 0.91706 0.94875 0.94642 0.92675 0.89519 0.90313 0.92218 0.90224 0.90326 0.95677 0.84765 0.85112 0.89397 0.90689 0.90020 0.91515 0.91225 0.91584 0.91974 0.92054 0.91933 0.91648 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.43 59.85 0.62 2.26 16 2 N -1.00 -20.64 3.23 -123.05 -0.40 -21.04 16 3 C 0.26 6.45 5.08 -5.19 -0.03 6.42 16 4 C -0.53 -14.87 9.38 -34.44 -0.32 -15.19 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 12 S 2.78 56.04 6.02 -107.50 -0.65 55.40 16 13 O -0.96 -23.16 16.08 -57.17 -0.92 -24.07 16 14 O -1.00 -21.04 15.29 -57.17 -0.87 -21.91 16 15 N -1.01 -15.22 2.80 -114.38 -0.32 -15.54 16 16 C 0.12 1.69 5.09 -4.05 -0.02 1.67 16 17 C -0.14 -1.79 5.80 -26.73 -0.15 -1.95 16 18 C 0.06 0.73 6.79 -3.82 -0.03 0.70 16 19 N -0.85 -8.96 9.62 -10.37 -0.10 -9.06 16 20 C 0.13 1.53 4.87 -4.04 -0.02 1.51 16 21 C -0.12 -1.35 3.15 -89.50 -0.28 -1.63 16 22 C -0.12 -1.21 4.83 -25.03 -0.12 -1.34 16 23 C -0.13 -1.14 6.91 -24.70 -0.17 -1.31 16 24 C -0.12 -1.02 6.83 -25.08 -0.17 -1.19 16 25 C -0.12 -1.10 6.46 -25.61 -0.17 -1.26 16 26 H 0.04 0.57 5.97 -51.93 -0.31 0.26 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 29 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.04 0.93 7.32 -51.93 -0.38 0.55 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.41 7.32 -51.93 -0.38 1.03 16 33 H 0.08 0.89 5.14 -51.93 -0.27 0.63 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.34 2.91 9.08 -39.29 -0.36 2.55 16 39 H 0.34 2.96 8.99 -39.29 -0.35 2.61 16 40 H 0.09 1.14 6.91 -51.93 -0.36 0.79 16 41 H 0.07 0.77 7.99 -51.93 -0.41 0.35 16 42 H 0.08 1.03 5.65 -51.93 -0.29 0.74 16 43 H 0.07 0.65 6.30 -51.93 -0.33 0.32 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -33.16 397.35 -11.33 -44.49 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.82 Total: 3.68 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.95 Total: -9.61 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.08 Total: -70.89 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.79 Total: -45.99 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.65 Total: 55.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.16 -11.33 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342904293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.885 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds