Wall clock time and date at job start Tue Mar 31 2020 17:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99649 * 2 1 4 4 C 1.50706 * 109.46832 * 274.99824 * 3 2 1 5 5 H 1.07998 * 120.00229 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00288 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99768 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47354 * 59.99458 * 8 6 4 10 10 H 1.48497 * 109.47249 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47372 * 300.00037 * 8 6 4 12 12 S 1.65597 * 120.00238 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40239 * 156.46162 * 12 2 1 14 14 O 1.42103 * 106.40253 * 23.54605 * 12 2 1 15 15 N 1.65591 * 107.22042 * 270.00121 * 12 2 1 16 16 C 1.46498 * 120.00456 * 269.99973 * 15 12 2 17 17 C 1.52994 * 109.47296 * 265.00172 * 16 15 12 18 18 C 1.53005 * 109.47222 * 179.97438 * 17 16 15 19 19 N 1.46899 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.46505 * 119.99950 * 90.00082 * 15 12 2 21 21 C 1.52997 * 109.47212 * 265.00044 * 20 15 12 22 22 C 1.54267 * 110.03373 * 292.90986 * 21 20 15 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.68906 * 21 20 15 26 26 H 1.08999 * 109.47218 * 269.99847 * 1 2 3 27 27 H 1.09003 * 109.47448 * 30.00582 * 1 2 3 28 28 H 1.08998 * 109.46719 * 150.00030 * 1 2 3 29 29 H 1.09001 * 109.47206 * 34.99634 * 3 2 1 30 30 H 1.09003 * 109.47216 * 154.99693 * 3 2 1 31 31 H 0.96996 * 120.00453 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46835 * 25.00228 * 16 15 12 33 33 H 1.09001 * 109.47298 * 144.99801 * 16 15 12 34 34 H 1.08999 * 109.47223 * 299.99818 * 17 16 15 35 35 H 1.09001 * 109.47250 * 59.99599 * 17 16 15 36 36 H 1.08999 * 109.47193 * 300.00228 * 18 17 16 37 37 H 1.09001 * 109.47015 * 59.99847 * 18 17 16 38 38 H 1.00903 * 110.99976 * 179.97438 * 19 18 17 39 39 H 1.00903 * 111.00346 * 303.95585 * 19 18 17 40 40 H 1.09002 * 109.47068 * 25.00104 * 20 15 12 41 41 H 1.09001 * 109.47372 * 145.00192 * 20 15 12 42 42 H 1.09004 * 110.01939 * 54.29375 * 21 20 15 43 43 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 44 44 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 45 45 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 46 46 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 47 47 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 48 48 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 49 49 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 50 50 H 1.09004 * 110.03196 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9289 1.1934 -2.2333 6 6 3.0005 2.9504 -1.6665 7 7 3.5032 3.6470 -0.6707 8 14 3.1795 3.5660 -3.4210 9 1 1.8333 3.7719 -4.0132 10 1 3.9218 4.8521 -3.4211 11 1 3.9252 2.5635 -4.2237 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4114 -2.4067 -0.5435 15 7 2.5381 -1.8579 1.5825 16 6 3.7452 -1.4111 2.2821 17 6 4.8135 -2.5036 2.2047 18 6 6.0744 -2.0366 2.9349 19 7 7.0998 -3.0859 2.8611 20 6 1.5478 -2.6799 2.2825 21 6 0.5872 -1.7736 3.0551 22 6 1.3366 -1.0652 4.2025 23 6 0.3066 -1.0242 5.3596 24 6 -0.4091 -2.3916 5.2297 25 6 -0.5226 -2.6163 3.7077 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6500 2.0044 0.5894 30 1 3.1857 1.1178 0.4344 31 1 3.9666 4.4807 -0.8473 32 1 4.1211 -0.5016 1.8134 33 1 3.5064 -1.2096 3.3264 34 1 4.4376 -3.4131 2.6734 35 1 5.0523 -2.7050 1.1605 36 1 6.4501 -1.1272 2.4658 37 1 5.8359 -1.8349 3.9791 38 1 7.9433 -2.8012 3.3361 39 1 6.7525 -3.9577 3.2317 40 1 0.9870 -3.2694 1.5573 41 1 2.0561 -3.3475 2.9782 42 1 0.1493 -1.0352 2.3834 43 1 2.2161 -1.6388 4.4951 44 1 1.6199 -0.0551 3.9068 45 1 -0.3981 -0.2046 5.2196 46 1 0.8077 -0.9405 6.3239 47 1 -1.3991 -2.3487 5.6839 48 1 0.1862 -3.1811 5.6885 49 1 -1.4992 -2.2864 3.3534 50 1 -0.3771 -3.6709 3.4737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342904293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:25 Heat of formation + Delta-G solvation = -117.402575 kcal Electronic energy + Delta-G solvation = -29343.522815 eV Core-core repulsion = 25530.566648 eV Total energy + Delta-G solvation = -3812.956167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.77790 -38.40263 -37.52203 -37.20933 -36.81996 -35.64409 -34.51135 -31.93135 -29.88295 -29.66027 -29.44520 -26.80178 -26.12067 -24.45966 -24.03847 -22.37254 -21.45031 -20.66917 -19.75245 -18.95359 -18.39881 -18.18837 -17.64699 -16.94076 -16.82192 -16.33965 -16.10765 -15.84821 -15.61905 -15.10173 -15.06394 -14.87337 -14.67408 -14.17767 -14.05656 -13.97281 -13.71283 -13.42164 -13.33045 -13.18315 -13.07271 -13.04611 -12.94572 -12.79400 -12.48858 -12.40738 -12.36703 -12.07596 -11.96203 -11.87563 -11.81627 -11.78109 -11.64954 -11.50629 -11.34614 -11.16660 -10.59942 -9.96696 -9.76292 -9.57791 -8.20981 -6.32645 -0.34709 1.37665 1.41293 1.48323 2.01674 2.38855 2.56418 3.09747 3.36332 3.60390 3.70180 3.77203 3.83928 3.94447 4.04843 4.11680 4.27611 4.40587 4.43852 4.49786 4.51548 4.59264 4.66306 4.66970 4.71957 4.76985 4.82144 4.91362 4.94600 4.98937 5.04166 5.06599 5.13798 5.17993 5.18546 5.27820 5.28569 5.34679 5.42953 5.46874 5.56548 5.57268 5.67745 5.73990 5.97012 6.10653 6.26292 6.65347 6.74653 7.35945 8.86171 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.004670 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.702732 B = 5994.821809 C = 7254.016223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.002 6.002 3 C 0.278 3.722 4 C -0.551 4.551 5 H 0.048 0.952 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.279 1.279 12 S 2.787 3.213 13 O -1.006 7.006 14 O -1.010 7.010 15 N -0.995 5.995 16 C 0.121 3.879 17 C -0.132 4.132 18 C 0.066 3.934 19 N -0.863 5.863 20 C 0.120 3.880 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.117 4.117 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.352 0.648 39 H 0.349 0.651 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -13.172 16.780 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.843 5.843 3 C 0.154 3.846 4 C -0.591 4.591 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.777 3.223 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.205 1.205 12 S 2.796 3.204 13 O -0.990 6.990 14 O -0.994 6.994 15 N -0.834 5.834 16 C -0.005 4.005 17 C -0.172 4.172 18 C -0.065 4.065 19 N -0.395 5.395 20 C -0.005 4.005 21 C -0.142 4.142 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.155 4.155 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.293 -13.376 15.260 20.741 hybrid contribution 0.144 1.015 -0.025 1.026 sum -4.149 -12.360 15.235 20.052 Atomic orbital electron populations 1.21573 0.78469 1.03361 1.02134 1.57555 1.15492 1.22049 1.89243 1.18549 0.90197 0.80177 0.95676 1.21794 1.36401 1.06677 0.94178 0.93369 1.25688 0.94728 0.96691 1.01297 1.69985 1.37715 1.15692 1.32701 0.85699 0.78817 0.77629 0.80138 1.18856 1.19897 1.20480 1.01575 0.72315 0.72466 0.74012 1.93568 1.42507 1.85399 1.77525 1.93469 1.67587 1.60432 1.77871 1.57815 1.29376 1.65293 1.30947 1.21428 0.83153 0.96357 0.99532 1.21942 0.94794 0.99448 1.00968 1.21628 0.91387 0.94777 0.98735 1.58572 1.08185 1.06520 1.66218 1.21747 0.89218 0.92615 0.96913 1.22399 0.96214 0.97940 0.97627 1.22499 0.98482 0.99845 0.94688 1.22513 0.97772 0.97710 0.98207 1.22324 1.00786 0.97063 0.95325 1.22144 0.97594 1.00126 0.95640 0.91111 0.91172 0.90954 0.95567 0.96664 0.92343 0.92671 0.87057 0.89624 0.93870 0.92525 0.92968 0.83462 0.83786 0.90016 0.87524 0.91867 0.90256 0.93158 0.92313 0.90858 0.91183 0.90751 0.91638 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.43 127.77 1.33 4.45 16 2 N -1.00 -42.63 3.23 -543.21 -1.75 -44.38 16 3 C 0.28 14.30 5.08 85.63 0.43 14.73 16 4 C -0.55 -31.89 9.38 25.60 0.24 -31.65 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 6 C 0.02 0.91 5.46 84.66 0.46 1.37 16 7 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 8 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 9 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 S 2.79 115.27 6.02 -56.49 -0.34 114.93 16 13 O -1.01 -51.00 16.08 -128.00 -2.06 -53.06 16 14 O -1.01 -42.84 15.29 -128.00 -1.96 -44.79 16 15 N -0.99 -29.70 2.80 -515.79 -1.44 -31.15 16 16 C 0.12 3.33 5.09 86.38 0.44 3.77 16 17 C -0.13 -3.34 5.80 30.59 0.18 -3.17 16 18 C 0.07 1.46 6.79 86.31 0.59 2.04 16 19 N -0.86 -16.98 9.62 -186.71 -1.80 -18.78 16 20 C 0.12 2.69 4.87 86.38 0.42 3.11 16 21 C -0.12 -2.48 3.15 -10.07 -0.03 -2.51 16 22 C -0.12 -2.20 4.83 31.70 0.15 -2.04 16 23 C -0.12 -1.93 6.91 31.91 0.22 -1.71 16 24 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 25 C -0.12 -1.83 6.46 31.32 0.20 -1.63 16 26 H 0.07 1.99 5.97 -2.39 -0.01 1.98 16 27 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 28 H 0.07 2.38 7.02 -2.39 -0.02 2.36 16 29 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 30 H 0.02 0.85 7.32 -2.39 -0.02 0.83 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.05 1.89 7.32 -2.39 -0.02 1.87 16 33 H 0.11 2.32 5.14 -2.39 -0.01 2.31 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.35 5.50 9.08 -89.69 -0.81 4.69 16 39 H 0.35 5.39 8.99 -89.69 -0.81 4.58 16 40 H 0.08 1.98 6.91 -2.39 -0.02 1.97 16 41 H 0.11 1.77 7.99 -2.39 -0.02 1.75 16 42 H 0.06 1.52 5.65 -2.38 -0.01 1.51 16 43 H 0.08 1.27 6.30 -2.39 -0.02 1.25 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 50 H 0.08 1.05 7.67 -2.38 -0.02 1.03 16 Total: -1.00 -73.33 397.35 -2.87 -76.20 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.69 Total: 22.26 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.85 Total: -14.57 kcal Atomic # 7 Polarization: -143.64 SS G_CDS: -4.71 Total: -148.35 kcal Atomic # 8 Polarization: -93.83 SS G_CDS: -4.02 Total: -97.85 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 115.27 SS G_CDS: -0.34 Total: 114.93 kcal Total: -73.33 -2.87 -76.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342904293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.202 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds