Wall clock time and date at job start Tue Mar 31 2020 17:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 N 1.46907 * 109.46978 * 184.99786 * 4 2 1 6 6 C 1.46951 * 111.00031 * 293.80205 * 5 4 2 7 7 C 1.53053 * 109.36816 * 176.81059 * 6 5 4 8 8 N 1.46952 * 109.36255 * 58.39896 * 7 6 5 9 9 C 1.46898 * 110.99877 * 176.81380 * 8 7 6 10 10 C 1.46965 * 110.88046 * 300.68180 * 8 7 6 11 11 C 1.46952 * 111.00058 * 170.00067 * 5 4 2 12 12 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 13 13 S 1.65593 * 119.99833 * 265.00113 * 12 2 1 14 14 O 1.42104 * 104.27905 * 308.92754 * 13 12 2 15 15 O 1.42102 * 104.27718 * 181.06534 * 13 12 2 16 16 C 1.81399 * 104.45079 * 64.99683 * 13 12 2 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47245 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46946 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99789 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47151 * 90.00298 * 23 21 19 25 25 H 1.48507 * 109.47197 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47171 * 330.00226 * 23 21 19 27 27 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 29 29 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 30 30 H 1.09000 * 109.47495 * 304.99729 * 4 2 1 31 31 H 1.08999 * 109.47487 * 65.00037 * 4 2 1 32 32 H 1.09004 * 109.48726 * 296.77846 * 6 5 4 33 33 H 1.08999 * 109.49402 * 56.83803 * 6 5 4 34 34 H 1.09000 * 109.48643 * 298.43265 * 7 6 5 35 35 H 1.08996 * 109.50675 * 178.38095 * 7 6 5 36 36 H 1.09003 * 109.47288 * 183.79454 * 9 8 7 37 37 H 1.09000 * 109.47241 * 303.79930 * 9 8 7 38 38 H 1.09004 * 109.47174 * 63.80192 * 9 8 7 39 39 H 1.08994 * 109.48826 * 299.35215 * 10 8 7 40 40 H 1.08998 * 109.50336 * 179.29867 * 10 8 7 41 41 H 1.09006 * 109.48943 * 303.15160 * 11 5 4 42 42 H 1.08996 * 109.49076 * 63.20130 * 11 5 4 43 43 H 0.97001 * 119.99882 * 84.99585 * 12 2 1 44 44 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 45 45 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 46 46 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 47 47 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 48 48 H 1.09001 * 109.47372 * 300.00032 * 18 17 16 49 49 H 1.09004 * 109.47108 * 60.00288 * 18 17 16 50 50 H 0.96996 * 120.00180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1906 6 6 4.1314 0.4996 -1.2758 7 6 5.6481 0.3538 -1.1313 8 7 6.1549 -0.5341 -2.1869 9 6 7.6189 -0.6395 -2.1281 10 6 5.5276 -1.8604 -2.1017 11 6 4.0109 -1.7145 -2.2462 12 7 2.0185 -0.6907 1.1960 13 16 2.4123 0.1769 2.5504 14 8 3.2875 1.1905 2.0750 15 8 2.8607 -0.8032 3.4764 16 6 0.8409 0.8986 3.0985 17 6 1.0752 1.7336 4.3590 18 6 -0.2501 2.3428 4.8209 19 6 -0.0191 3.1658 6.0620 20 1 0.9738 3.2466 6.4794 21 6 -1.0750 3.8164 6.6642 22 7 -2.2840 3.7184 6.1557 23 14 -0.7888 4.8359 8.2030 24 1 -0.4699 6.2343 7.8182 25 1 -2.0141 4.8206 9.0420 26 1 0.3450 4.2634 8.9723 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6053 -1.7197 -1.2954 31 1 1.7516 -0.1582 -2.1371 32 1 3.8996 0.9502 -2.2409 33 1 3.7493 1.1347 -0.4765 34 1 5.8812 -0.0716 -0.1552 35 1 6.1182 1.3330 -1.2229 36 1 7.9732 -1.2478 -2.9604 37 1 8.0578 0.3562 -2.1932 38 1 7.9122 -1.1051 -1.1872 39 1 5.7593 -2.3109 -1.1367 40 1 5.9096 -2.4956 -2.9008 41 1 3.5411 -2.6938 -2.1543 42 1 3.7775 -1.2893 -3.2223 43 1 2.1111 -1.6563 1.1946 44 1 0.4388 1.5350 2.3102 45 1 0.1317 0.1006 3.3184 46 1 1.4771 1.0969 5.1471 47 1 1.7846 2.5317 4.1394 48 1 -0.6516 2.9797 4.0326 49 1 -0.9597 1.5451 5.0403 50 1 -3.0268 4.1765 6.5791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345147972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:24 Heat of formation + Delta-G solvation = -75.328005 kcal Electronic energy + Delta-G solvation = -27914.704434 eV Core-core repulsion = 24103.572757 eV Total energy + Delta-G solvation = -3811.131677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.67448 -37.34256 -36.70085 -35.64558 -34.75532 -34.60711 -32.18766 -31.15720 -30.40457 -28.82831 -27.77567 -25.62231 -24.00297 -23.70864 -23.28078 -21.26944 -20.63974 -19.99841 -19.17676 -17.55033 -16.72797 -16.54280 -16.18884 -15.68901 -15.45312 -15.24011 -15.11977 -14.84147 -14.79580 -14.48850 -14.36701 -14.17403 -13.51216 -13.20465 -12.77622 -12.65748 -12.57444 -12.36021 -12.22132 -12.15739 -11.91911 -11.86119 -11.76909 -11.71191 -11.48417 -11.47405 -11.35497 -11.19254 -11.01257 -10.91432 -10.81609 -10.66628 -10.39647 -9.93841 -9.65081 -9.30137 -9.05367 -8.69029 -8.48777 -8.40517 -6.05549 -4.08414 0.55629 2.94234 3.30539 3.36643 3.40902 3.57700 3.68178 4.04318 4.40901 4.42972 4.49992 4.60851 4.76843 4.82785 4.91023 4.98839 5.07487 5.12906 5.15022 5.18769 5.20150 5.27262 5.29447 5.30955 5.34320 5.37703 5.48135 5.53875 5.57535 5.59143 5.65548 5.82561 5.86375 5.88164 6.03869 6.08399 6.28897 6.47097 6.64852 6.68693 6.86848 6.88592 6.88727 7.10786 7.57353 7.67576 7.92640 8.33406 8.97844 9.56266 11.05677 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002471 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.880984 B =11327.264125 C =11895.192596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.148 3.852 3 H 0.090 0.910 4 C 0.054 3.946 5 N -0.534 5.534 6 C 0.050 3.950 7 C 0.057 3.943 8 N -0.547 5.547 9 C 0.025 3.975 10 C 0.056 3.944 11 C 0.058 3.942 12 N -1.104 6.104 13 S 2.602 3.398 14 O -0.962 6.962 15 O -0.966 6.966 16 C -0.614 4.614 17 C -0.105 4.105 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.416 0.584 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -11.899 -21.108 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.075 4.075 5 N -0.259 5.259 6 C -0.078 4.078 7 C -0.071 4.071 8 N -0.272 5.272 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.070 4.070 12 N -0.861 5.861 13 S 2.697 3.303 14 O -0.952 6.952 15 O -0.957 6.957 16 C -0.745 4.745 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.250 0.750 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.793 -11.587 -20.736 26.520 hybrid contribution -0.695 0.226 0.701 1.013 sum 11.098 -11.361 -20.035 25.566 Atomic orbital electron populations 1.22470 0.94898 1.03275 1.03393 1.20811 0.93461 0.96746 0.85007 0.89157 1.22350 0.87774 1.01179 0.96211 1.62063 1.05024 1.12012 1.46775 1.22306 0.93820 0.90347 1.01282 1.22158 0.94849 0.97146 0.92961 1.62201 1.05820 1.11566 1.47616 1.22339 0.87516 1.02147 1.00332 1.22157 0.93963 0.90334 1.00783 1.22142 0.94601 0.97248 0.93059 1.55466 1.84108 1.19680 1.26890 1.05218 0.77458 0.74484 0.73131 1.93543 1.61668 1.60603 1.79367 1.93568 1.80125 1.59118 1.62861 1.30709 1.21514 1.12190 1.10134 1.21486 1.03529 0.97671 0.91769 1.19058 0.89865 0.95619 0.96199 1.21259 0.94597 1.29883 1.10643 0.92392 1.25019 0.95134 0.96638 0.97611 1.69954 0.99520 1.43482 1.40505 0.86559 0.77713 0.80577 0.82978 1.20569 1.21181 1.19746 0.91553 0.91122 0.91246 0.90015 0.93464 0.94191 0.88586 0.93611 0.90195 0.91507 0.91323 0.95511 0.93885 0.90514 0.90352 0.94102 0.75050 0.85557 0.85369 0.91685 0.91643 0.96165 0.96149 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.35 2.59 -67.93 -0.18 1.17 16 3 H 0.09 0.90 6.07 -51.93 -0.32 0.58 16 4 C 0.05 0.43 4.58 -3.82 -0.02 0.41 16 5 N -0.53 -5.08 4.43 -234.46 -1.04 -6.12 16 6 C 0.05 0.53 5.41 -3.77 -0.02 0.51 16 7 C 0.06 0.61 5.62 -3.77 -0.02 0.59 16 8 N -0.55 -5.21 4.97 -242.75 -1.21 -6.42 16 9 C 0.02 0.20 9.60 60.06 0.58 0.77 16 10 C 0.06 0.48 5.62 -3.76 -0.02 0.46 16 11 C 0.06 0.47 5.61 -3.77 -0.02 0.45 16 12 N -1.10 -11.79 5.08 -4.89 -0.02 -11.82 16 13 S 2.60 38.35 5.44 -107.50 -0.58 37.76 16 14 O -0.96 -16.37 16.86 -57.54 -0.97 -17.34 16 15 O -0.97 -17.46 18.08 -57.54 -1.04 -18.50 16 16 C -0.61 -9.40 5.22 37.16 0.19 -9.20 16 17 C -0.11 -2.14 5.16 -26.73 -0.14 -2.27 16 18 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 19 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.63 5.78 -51.93 -0.30 0.33 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.05 0.34 8.12 -51.93 -0.42 -0.09 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 1.15 5.91 -51.93 -0.31 0.84 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.80 8.13 -51.93 -0.42 0.37 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 38 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.42 3.91 8.80 -34.47 -0.30 3.61 16 44 H 0.13 1.70 6.77 -51.92 -0.35 1.35 16 45 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -34.63 401.29 -12.08 -46.72 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.14 Total: 0.04 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 0.16 Total: -21.15 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -1.53 Total: -50.17 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -2.01 Total: -35.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.58 Total: 37.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.63 -12.08 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345147972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.613 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds