Wall clock time and date at job start Tue Mar 31 2020 17:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 N 1.46907 * 109.46978 * 184.99786 * 4 2 1 6 6 C 1.46951 * 111.00031 * 293.80205 * 5 4 2 7 7 C 1.53053 * 109.36816 * 176.81059 * 6 5 4 8 8 N 1.46952 * 109.36255 * 58.39896 * 7 6 5 9 9 C 1.46898 * 110.99877 * 176.81380 * 8 7 6 10 10 C 1.46965 * 110.88046 * 300.68180 * 8 7 6 11 11 C 1.46952 * 111.00058 * 170.00067 * 5 4 2 12 12 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 13 13 S 1.65593 * 119.99833 * 265.00113 * 12 2 1 14 14 O 1.42104 * 104.27905 * 308.92754 * 13 12 2 15 15 O 1.42102 * 104.27718 * 181.06534 * 13 12 2 16 16 C 1.81399 * 104.45079 * 64.99683 * 13 12 2 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47245 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46946 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99789 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47151 * 90.00298 * 23 21 19 25 25 H 1.48507 * 109.47197 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47171 * 330.00226 * 23 21 19 27 27 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 29 29 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 30 30 H 1.09000 * 109.47495 * 304.99729 * 4 2 1 31 31 H 1.08999 * 109.47487 * 65.00037 * 4 2 1 32 32 H 1.09004 * 109.48726 * 296.77846 * 6 5 4 33 33 H 1.08999 * 109.49402 * 56.83803 * 6 5 4 34 34 H 1.09000 * 109.48643 * 298.43265 * 7 6 5 35 35 H 1.08996 * 109.50675 * 178.38095 * 7 6 5 36 36 H 1.09003 * 109.47288 * 183.79454 * 9 8 7 37 37 H 1.09000 * 109.47241 * 303.79930 * 9 8 7 38 38 H 1.09004 * 109.47174 * 63.80192 * 9 8 7 39 39 H 1.08994 * 109.48826 * 299.35215 * 10 8 7 40 40 H 1.08998 * 109.50336 * 179.29867 * 10 8 7 41 41 H 1.09006 * 109.48943 * 303.15160 * 11 5 4 42 42 H 1.08996 * 109.49076 * 63.20130 * 11 5 4 43 43 H 0.97001 * 119.99882 * 84.99585 * 12 2 1 44 44 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 45 45 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 46 46 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 47 47 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 48 48 H 1.09001 * 109.47372 * 300.00032 * 18 17 16 49 49 H 1.09004 * 109.47108 * 60.00288 * 18 17 16 50 50 H 0.96996 * 120.00180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1906 6 6 4.1314 0.4996 -1.2758 7 6 5.6481 0.3538 -1.1313 8 7 6.1549 -0.5341 -2.1869 9 6 7.6189 -0.6395 -2.1281 10 6 5.5276 -1.8604 -2.1017 11 6 4.0109 -1.7145 -2.2462 12 7 2.0185 -0.6907 1.1960 13 16 2.4123 0.1769 2.5504 14 8 3.2875 1.1905 2.0750 15 8 2.8607 -0.8032 3.4764 16 6 0.8409 0.8986 3.0985 17 6 1.0752 1.7336 4.3590 18 6 -0.2501 2.3428 4.8209 19 6 -0.0191 3.1658 6.0620 20 1 0.9738 3.2466 6.4794 21 6 -1.0750 3.8164 6.6642 22 7 -2.2840 3.7184 6.1557 23 14 -0.7888 4.8359 8.2030 24 1 -0.4699 6.2343 7.8182 25 1 -2.0141 4.8206 9.0420 26 1 0.3450 4.2634 8.9723 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6053 -1.7197 -1.2954 31 1 1.7516 -0.1582 -2.1371 32 1 3.8996 0.9502 -2.2409 33 1 3.7493 1.1347 -0.4765 34 1 5.8812 -0.0716 -0.1552 35 1 6.1182 1.3330 -1.2229 36 1 7.9732 -1.2478 -2.9604 37 1 8.0578 0.3562 -2.1932 38 1 7.9122 -1.1051 -1.1872 39 1 5.7593 -2.3109 -1.1367 40 1 5.9096 -2.4956 -2.9008 41 1 3.5411 -2.6938 -2.1543 42 1 3.7775 -1.2893 -3.2223 43 1 2.1111 -1.6563 1.1946 44 1 0.4388 1.5350 2.3102 45 1 0.1317 0.1006 3.3184 46 1 1.4771 1.0969 5.1471 47 1 1.7846 2.5317 4.1394 48 1 -0.6516 2.9797 4.0326 49 1 -0.9597 1.5451 5.0403 50 1 -3.0268 4.1765 6.5791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345147972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:23 Heat of formation + Delta-G solvation = -102.961764 kcal Electronic energy + Delta-G solvation = -27915.902724 eV Core-core repulsion = 24103.572757 eV Total energy + Delta-G solvation = -3812.329967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38713 -38.27543 -37.84325 -36.96945 -36.47238 -35.45177 -34.16804 -31.88385 -31.21529 -29.77219 -29.34674 -26.32017 -25.55539 -24.72599 -24.00621 -22.41976 -21.98507 -20.75246 -20.32552 -18.76679 -18.51937 -17.51308 -17.19140 -17.03871 -16.54174 -16.35132 -16.03927 -15.90182 -15.74450 -15.57645 -15.44846 -15.07974 -14.52747 -14.30875 -14.18088 -13.83058 -13.50894 -13.45159 -13.22872 -13.16170 -13.10501 -13.06907 -12.99233 -12.88658 -12.74353 -12.61819 -12.53192 -12.30982 -12.22616 -12.12667 -12.07569 -11.74795 -11.69977 -11.39376 -11.36629 -11.09492 -10.57596 -10.29266 -9.42264 -9.19419 -8.22907 -6.33731 -0.67106 1.39821 1.40485 1.51904 1.87254 2.39572 2.82367 2.89636 2.98893 3.10512 3.29016 3.72822 3.78046 3.91716 3.93107 4.09801 4.15988 4.19891 4.31079 4.34169 4.38371 4.47358 4.51398 4.55738 4.61133 4.65413 4.66581 4.73215 4.84614 4.87345 4.89771 4.93134 4.97691 5.02162 5.05911 5.06836 5.09875 5.32538 5.42447 5.45682 5.63138 5.79308 5.95585 5.97178 6.15978 6.19778 6.20345 6.30406 6.81631 7.35444 8.88508 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002471 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.880984 B =11327.264125 C =11895.192596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.142 3.858 3 H 0.080 0.920 4 C 0.057 3.943 5 N -0.548 5.548 6 C 0.053 3.947 7 C 0.057 3.943 8 N -0.552 5.552 9 C 0.024 3.976 10 C 0.054 3.946 11 C 0.060 3.940 12 N -1.088 6.088 13 S 2.627 3.373 14 O -0.985 6.985 15 O -1.000 7.000 16 C -0.613 4.613 17 C -0.105 4.105 18 C 0.032 3.968 19 C -0.552 4.552 20 H 0.059 0.941 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.266 1.266 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.029 0.971 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.425 0.575 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.004 0.996 49 H 0.003 0.997 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -12.650 -22.420 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.072 4.072 5 N -0.273 5.273 6 C -0.075 4.075 7 C -0.071 4.071 8 N -0.277 5.277 9 C -0.124 4.124 10 C -0.074 4.074 11 C -0.068 4.068 12 N -0.849 5.849 13 S 2.721 3.279 14 O -0.975 6.975 15 O -0.990 6.990 16 C -0.743 4.743 17 C -0.145 4.145 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.077 0.923 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.190 1.190 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.261 0.739 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.023 0.977 49 H 0.021 0.979 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.804 -12.347 -22.050 27.892 hybrid contribution -0.696 0.428 1.024 1.310 sum 11.108 -11.919 -21.026 26.600 Atomic orbital electron populations 1.22465 0.93549 1.04297 1.03617 1.21028 0.94483 0.96325 0.84691 0.90183 1.22393 0.86794 1.02328 0.95691 1.62060 1.06018 1.11473 1.47737 1.22191 0.93620 0.90952 1.00734 1.22110 0.95370 0.97414 0.92221 1.62253 1.06719 1.11996 1.46689 1.22397 0.86688 1.02657 1.00648 1.22245 0.94556 0.89943 1.00696 1.22188 0.94236 0.97745 0.92637 1.55074 1.83913 1.19948 1.25995 1.04248 0.76681 0.73768 0.73187 1.93517 1.62472 1.61707 1.79809 1.93519 1.80771 1.60010 1.64684 1.30673 1.22847 1.12428 1.08363 1.21298 1.00784 0.98282 0.94092 1.18950 0.91922 0.94696 0.95017 1.21737 0.94832 1.30560 1.11915 0.92314 1.25923 0.94855 0.97822 1.00930 1.70063 1.00358 1.44410 1.42043 0.85491 0.77902 0.79010 0.78945 1.19656 1.20489 1.19020 0.90152 0.92321 0.89633 0.88030 0.92080 0.93732 0.90391 0.96010 0.90102 0.89929 0.91011 0.96130 0.95301 0.88698 0.88556 0.93836 0.73869 0.83696 0.83704 0.91955 0.91639 0.97734 0.97900 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.14 2.33 2.59 44.99 0.12 2.45 16 3 H 0.08 1.51 6.07 -2.39 -0.01 1.50 16 4 C 0.06 0.75 4.58 86.30 0.39 1.14 16 5 N -0.55 -9.53 4.43 -895.70 -3.97 -13.50 16 6 C 0.05 1.10 5.41 86.31 0.47 1.56 16 7 C 0.06 1.23 5.62 86.31 0.49 1.72 16 8 N -0.55 -10.00 4.97 -921.94 -4.58 -14.58 16 9 C 0.02 0.36 9.60 127.69 1.23 1.58 16 10 C 0.05 0.84 5.62 86.31 0.49 1.32 16 11 C 0.06 0.83 5.61 86.31 0.48 1.32 16 12 N -1.09 -21.79 5.08 -169.38 -0.86 -22.65 16 13 S 2.63 76.60 5.44 -56.49 -0.31 76.29 16 14 O -0.99 -33.74 16.86 -127.65 -2.15 -35.89 16 15 O -1.00 -36.01 18.08 -127.65 -2.31 -38.31 16 16 C -0.61 -18.50 5.22 71.98 0.38 -18.12 16 17 C -0.11 -4.34 5.16 30.59 0.16 -4.18 16 18 C 0.03 1.67 4.97 29.85 0.15 1.82 16 19 C -0.55 -31.61 9.11 25.60 0.23 -31.37 16 20 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 21 C 0.00 0.17 5.46 84.65 0.46 0.63 16 22 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 23 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.93 5.78 -2.39 -0.01 0.92 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 31 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 1.88 5.91 -2.39 -0.01 1.86 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 38 H 0.02 0.32 8.14 -2.39 -0.02 0.31 16 39 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.00 8.07 -2.38 -0.02 0.98 16 42 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.42 7.22 8.80 -96.75 -0.85 6.37 16 44 H 0.14 3.80 6.77 -2.39 -0.02 3.79 16 45 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 46 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 48 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 50 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -74.86 401.29 -6.10 -80.96 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.05 Total: 18.51 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 5.72 Total: -41.84 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -9.13 Total: -106.09 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -4.46 Total: -74.21 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 76.60 SS G_CDS: -0.31 Total: 76.29 kcal Total: -74.86 -6.10 -80.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345147972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.001 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds