Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 C 1.53003 * 109.46988 * 240.00334 * 2 1 3 5 5 C 1.52993 * 109.47047 * 174.99933 * 4 2 1 6 6 N 1.46904 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.46957 * 110.99917 * 293.80041 * 6 5 4 8 8 C 1.53046 * 109.36448 * 176.80795 * 7 6 5 9 9 N 1.46958 * 109.36383 * 58.40195 * 8 7 6 10 10 C 1.46894 * 111.00310 * 176.81081 * 9 8 7 11 11 C 1.46957 * 110.88014 * 300.67885 * 9 8 7 12 12 C 1.46956 * 110.99896 * 169.99942 * 6 5 4 13 13 N 1.46496 * 109.47025 * 120.00134 * 2 1 3 14 14 S 1.65599 * 120.00146 * 264.99940 * 13 2 1 15 15 O 1.42105 * 104.27655 * 308.92954 * 14 13 2 16 16 O 1.42101 * 104.27764 * 181.07391 * 14 13 2 17 17 C 1.81395 * 104.44748 * 65.00260 * 14 13 2 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47535 * 180.02562 * 18 17 14 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47443 * 59.99483 * 23 21 19 25 25 H 1.48505 * 109.47343 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 299.99442 * 23 21 19 27 27 H 1.08999 * 109.47126 * 59.99779 * 1 2 3 28 28 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46789 * 299.99891 * 1 2 3 30 30 H 1.08994 * 109.46891 * 294.99867 * 4 2 1 31 31 H 1.09007 * 109.47125 * 54.99922 * 4 2 1 32 32 H 1.09007 * 109.47206 * 299.99993 * 5 4 2 33 33 H 1.09003 * 109.47605 * 59.99771 * 5 4 2 34 34 H 1.09003 * 109.48916 * 296.77585 * 7 6 5 35 35 H 1.08999 * 109.48659 * 56.84158 * 7 6 5 36 36 H 1.09002 * 109.49021 * 298.43856 * 8 7 6 37 37 H 1.09002 * 109.50729 * 178.37581 * 8 7 6 38 38 H 1.08995 * 109.47558 * 183.80035 * 10 9 8 39 39 H 1.09007 * 109.47292 * 303.80210 * 10 9 8 40 40 H 1.08998 * 109.47314 * 63.79526 * 10 9 8 41 41 H 1.09003 * 109.48916 * 299.35364 * 11 9 8 42 42 H 1.09001 * 109.50732 * 179.29817 * 11 9 8 43 43 H 1.09001 * 109.49035 * 303.15528 * 12 6 5 44 44 H 1.09000 * 109.49151 * 63.22254 * 12 6 5 45 45 H 0.97001 * 119.99851 * 85.00466 * 13 2 1 46 46 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 47 47 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 48 48 H 1.09004 * 109.47080 * 299.99725 * 18 17 14 49 49 H 1.09005 * 109.47285 * 59.99790 * 18 17 14 50 50 H 0.96996 * 119.99792 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0546 -1.3062 -2.5130 7 6 3.8133 -2.7529 -2.4206 8 6 4.2639 -3.4264 -3.7190 9 7 5.6889 -3.1463 -3.9441 10 6 6.1786 -3.8392 -5.1432 11 6 5.9301 -1.6996 -4.0364 12 6 5.4795 -1.0261 -2.7380 13 7 2.0184 -0.6906 1.1961 14 16 2.4122 0.1771 2.5505 15 8 3.2875 1.1906 2.0751 16 8 2.8607 -0.8030 3.4765 17 6 0.8408 0.8987 3.0985 18 6 1.0754 1.7348 4.3582 19 6 -0.2302 2.3339 4.8139 20 1 -1.1366 2.1382 4.2602 21 6 -0.2674 3.1326 5.9371 22 7 0.8363 3.3713 6.6112 23 14 -1.8856 3.8757 6.5015 24 1 -2.8515 2.7885 6.8022 25 1 -1.6580 4.6871 7.7243 26 1 -2.4340 4.7419 5.4272 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -1.7714 -1.2057 31 1 1.6054 -0.2616 -2.1371 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4261 34 1 4.3779 -3.1630 -1.5833 35 1 2.7497 -2.9350 -2.2666 36 1 3.6805 -3.0358 -4.5528 37 1 4.1127 -4.5031 -3.6420 38 1 7.2501 -3.6696 -5.2487 39 1 5.9875 -4.9082 -5.0487 40 1 5.6615 -3.4541 -6.0220 41 1 5.3656 -1.2895 -4.8738 42 1 6.9936 -1.5171 -4.1906 43 1 5.6307 0.0506 -2.8153 44 1 6.0630 -1.4166 -1.9042 45 1 2.1110 -1.6562 1.1948 46 1 0.4387 1.5352 2.3102 47 1 0.1316 0.1008 3.3185 48 1 1.4777 1.0988 5.1467 49 1 1.7845 2.5328 4.1378 50 1 0.8100 3.9329 7.4016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351597314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = -76.774249 kcal Electronic energy + Delta-G solvation = -27432.993873 eV Core-core repulsion = 23621.799482 eV Total energy + Delta-G solvation = -3811.194391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.66403 -37.53653 -36.51014 -35.48222 -35.38620 -33.90234 -31.40619 -31.19823 -30.99923 -29.55197 -27.44036 -25.58515 -24.40322 -23.86232 -22.41490 -21.60600 -21.01942 -20.05110 -19.04680 -17.54198 -16.71995 -16.42042 -16.17410 -15.50478 -15.42818 -15.27243 -15.16812 -14.91156 -14.72760 -14.58898 -14.50838 -13.70407 -13.55989 -13.29511 -13.05168 -12.83107 -12.67289 -12.48263 -12.27979 -12.22243 -11.74467 -11.65996 -11.60530 -11.57156 -11.53551 -11.46464 -11.23458 -11.11440 -11.06559 -10.97295 -10.75229 -10.71839 -10.41666 -10.35899 -9.81554 -9.49336 -9.04204 -8.77001 -8.52903 -8.50080 -6.12309 -4.17962 0.81641 3.15815 3.26908 3.31861 3.33516 3.54185 3.60607 4.25685 4.38055 4.51994 4.58985 4.68244 4.69465 4.80832 4.88299 4.93115 5.01852 5.05302 5.16775 5.18187 5.19489 5.22691 5.29046 5.35526 5.44403 5.46340 5.47102 5.54948 5.59226 5.62521 5.66451 5.68581 5.74019 5.80154 5.84401 5.99507 6.13779 6.24190 6.51838 6.58566 6.61452 6.84506 6.86101 7.12930 7.30141 7.36552 7.80292 8.17551 8.85143 9.46679 10.98660 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031186 B = 0.002178 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.610113 B =12854.170084 C =13167.901174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.114 4.114 5 C 0.052 3.948 6 N -0.541 5.541 7 C 0.052 3.948 8 C 0.057 3.943 9 N -0.547 5.547 10 C 0.026 3.974 11 C 0.058 3.942 12 C 0.054 3.946 13 N -1.122 6.122 14 S 2.591 3.409 15 O -0.967 6.967 16 O -0.970 6.970 17 C -0.591 4.591 18 C 0.028 3.972 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.411 0.589 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.033 0.967 49 H 0.033 0.967 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -12.673 -23.680 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.076 4.076 6 N -0.265 5.265 7 C -0.076 4.076 8 C -0.071 4.071 9 N -0.272 5.272 10 C -0.122 4.122 11 C -0.070 4.070 12 C -0.074 4.074 13 N -0.879 5.879 14 S 2.688 3.312 15 O -0.957 6.957 16 O -0.960 6.960 17 C -0.724 4.724 18 C -0.011 4.011 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.244 0.756 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.004 -12.318 -23.188 26.934 hybrid contribution -1.518 0.048 0.270 1.542 sum 4.487 -12.270 -22.918 26.380 Atomic orbital electron populations 1.22460 0.95172 1.02929 1.03232 1.20794 0.93855 0.97024 0.84654 0.88812 1.21826 0.95027 1.01167 0.97340 1.22159 0.95366 0.99605 0.90431 1.62191 1.16919 1.08900 1.38530 1.22225 1.01061 0.87618 0.96745 1.22171 0.87603 0.99996 0.97302 1.62148 1.17529 1.09536 1.37998 1.22338 1.00517 0.99087 0.90307 1.22171 1.00691 0.86991 0.97173 1.22165 0.88010 1.00318 0.96888 1.55902 1.84376 1.19421 1.28213 1.05569 0.78242 0.74440 0.72904 1.93540 1.62427 1.60247 1.79464 1.93550 1.80603 1.59368 1.62484 1.30548 1.19056 1.11723 1.11082 1.18957 0.99534 0.94303 0.88293 1.20959 0.93418 1.30518 1.11081 0.92105 1.25071 0.96790 0.96256 0.96401 1.69945 1.26957 1.37710 1.18214 0.86528 0.83368 0.79204 0.78147 1.20112 1.21091 1.20084 0.91337 0.91915 0.91257 0.91363 0.89881 0.90139 0.94018 0.93884 0.89904 0.94019 0.90419 0.91350 0.91389 0.95630 0.93973 0.90338 0.90009 0.93813 0.75648 0.86179 0.86101 0.94911 0.94854 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.52 2.81 -67.93 -0.19 1.33 16 3 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 4 C -0.11 -1.01 4.75 -26.73 -0.13 -1.14 16 5 C 0.05 0.54 4.84 -3.83 -0.02 0.52 16 6 N -0.54 -5.21 4.71 -234.46 -1.10 -6.32 16 7 C 0.05 0.45 5.41 -3.77 -0.02 0.43 16 8 C 0.06 0.46 5.62 -3.77 -0.02 0.44 16 9 N -0.55 -4.66 4.97 -242.75 -1.21 -5.86 16 10 C 0.03 0.17 9.60 60.06 0.58 0.74 16 11 C 0.06 0.48 5.62 -3.76 -0.02 0.46 16 12 C 0.05 0.51 5.61 -3.76 -0.02 0.49 16 13 N -1.12 -13.72 4.81 -4.89 -0.02 -13.75 16 14 S 2.59 45.32 5.44 -107.50 -0.58 44.74 16 15 O -0.97 -19.56 17.39 -57.54 -1.00 -20.56 16 16 O -0.97 -20.06 18.08 -57.54 -1.04 -21.10 16 17 C -0.59 -11.04 5.16 37.16 0.19 -10.85 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.73 5.78 -51.93 -0.30 0.43 16 30 H 0.07 0.54 6.49 -51.93 -0.34 0.20 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 33 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.54 8.13 -51.93 -0.42 0.11 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.13 -51.92 -0.42 -0.03 16 40 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.41 4.24 8.80 -34.47 -0.30 3.94 16 46 H 0.12 1.99 6.77 -51.92 -0.35 1.64 16 47 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 48 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -34.57 401.64 -12.17 -46.74 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.13 Total: 1.04 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 0.15 Total: -21.39 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -1.60 Total: -51.62 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.04 Total: -41.67 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.32 SS G_CDS: -0.58 Total: 44.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.57 -12.17 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351597314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.032 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds