Wall clock time and date at job start Tue Mar 31 2020 17:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 C 1.53003 * 109.46988 * 240.00334 * 2 1 3 5 5 C 1.52993 * 109.47047 * 174.99933 * 4 2 1 6 6 N 1.46904 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.46957 * 110.99917 * 293.80041 * 6 5 4 8 8 C 1.53046 * 109.36448 * 176.80795 * 7 6 5 9 9 N 1.46958 * 109.36383 * 58.40195 * 8 7 6 10 10 C 1.46894 * 111.00310 * 176.81081 * 9 8 7 11 11 C 1.46957 * 110.88014 * 300.67885 * 9 8 7 12 12 C 1.46956 * 110.99896 * 169.99942 * 6 5 4 13 13 N 1.46496 * 109.47025 * 120.00134 * 2 1 3 14 14 S 1.65599 * 120.00146 * 264.99940 * 13 2 1 15 15 O 1.42105 * 104.27655 * 308.92954 * 14 13 2 16 16 O 1.42101 * 104.27764 * 181.07391 * 14 13 2 17 17 C 1.81395 * 104.44748 * 65.00260 * 14 13 2 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47535 * 180.02562 * 18 17 14 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47443 * 59.99483 * 23 21 19 25 25 H 1.48505 * 109.47343 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 299.99442 * 23 21 19 27 27 H 1.08999 * 109.47126 * 59.99779 * 1 2 3 28 28 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46789 * 299.99891 * 1 2 3 30 30 H 1.08994 * 109.46891 * 294.99867 * 4 2 1 31 31 H 1.09007 * 109.47125 * 54.99922 * 4 2 1 32 32 H 1.09007 * 109.47206 * 299.99993 * 5 4 2 33 33 H 1.09003 * 109.47605 * 59.99771 * 5 4 2 34 34 H 1.09003 * 109.48916 * 296.77585 * 7 6 5 35 35 H 1.08999 * 109.48659 * 56.84158 * 7 6 5 36 36 H 1.09002 * 109.49021 * 298.43856 * 8 7 6 37 37 H 1.09002 * 109.50729 * 178.37581 * 8 7 6 38 38 H 1.08995 * 109.47558 * 183.80035 * 10 9 8 39 39 H 1.09007 * 109.47292 * 303.80210 * 10 9 8 40 40 H 1.08998 * 109.47314 * 63.79526 * 10 9 8 41 41 H 1.09003 * 109.48916 * 299.35364 * 11 9 8 42 42 H 1.09001 * 109.50732 * 179.29817 * 11 9 8 43 43 H 1.09001 * 109.49035 * 303.15528 * 12 6 5 44 44 H 1.09000 * 109.49151 * 63.22254 * 12 6 5 45 45 H 0.97001 * 119.99851 * 85.00466 * 13 2 1 46 46 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 47 47 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 48 48 H 1.09004 * 109.47080 * 299.99725 * 18 17 14 49 49 H 1.09005 * 109.47285 * 59.99790 * 18 17 14 50 50 H 0.96996 * 119.99792 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0546 -1.3062 -2.5130 7 6 3.8133 -2.7529 -2.4206 8 6 4.2639 -3.4264 -3.7190 9 7 5.6889 -3.1463 -3.9441 10 6 6.1786 -3.8392 -5.1432 11 6 5.9301 -1.6996 -4.0364 12 6 5.4795 -1.0261 -2.7380 13 7 2.0184 -0.6906 1.1961 14 16 2.4122 0.1771 2.5505 15 8 3.2875 1.1906 2.0751 16 8 2.8607 -0.8030 3.4765 17 6 0.8408 0.8987 3.0985 18 6 1.0754 1.7348 4.3582 19 6 -0.2302 2.3339 4.8139 20 1 -1.1366 2.1382 4.2602 21 6 -0.2674 3.1326 5.9371 22 7 0.8363 3.3713 6.6112 23 14 -1.8856 3.8757 6.5015 24 1 -2.8515 2.7885 6.8022 25 1 -1.6580 4.6871 7.7243 26 1 -2.4340 4.7419 5.4272 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -1.7714 -1.2057 31 1 1.6054 -0.2616 -2.1371 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4261 34 1 4.3779 -3.1630 -1.5833 35 1 2.7497 -2.9350 -2.2666 36 1 3.6805 -3.0358 -4.5528 37 1 4.1127 -4.5031 -3.6420 38 1 7.2501 -3.6696 -5.2487 39 1 5.9875 -4.9082 -5.0487 40 1 5.6615 -3.4541 -6.0220 41 1 5.3656 -1.2895 -4.8738 42 1 6.9936 -1.5171 -4.1906 43 1 5.6307 0.0506 -2.8153 44 1 6.0630 -1.4166 -1.9042 45 1 2.1110 -1.6562 1.1948 46 1 0.4387 1.5352 2.3102 47 1 0.1316 0.1008 3.3185 48 1 1.4777 1.0988 5.1467 49 1 1.7845 2.5328 4.1378 50 1 0.8100 3.9329 7.4016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351597314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:03 Heat of formation + Delta-G solvation = -104.788384 kcal Electronic energy + Delta-G solvation = -27434.208657 eV Core-core repulsion = 23621.799482 eV Total energy + Delta-G solvation = -3812.409175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.35967 -38.47315 -37.97850 -36.98616 -36.21496 -35.88611 -33.14032 -32.18216 -31.77977 -30.35688 -28.13748 -27.50812 -25.06381 -24.54679 -23.63030 -23.06728 -21.86204 -20.74740 -20.40288 -19.14406 -18.27923 -17.52806 -17.15196 -16.95362 -16.52942 -16.39959 -16.04444 -15.88752 -15.72693 -15.70875 -15.27060 -15.12873 -14.56068 -14.47132 -14.09942 -13.92996 -13.74115 -13.46825 -13.41362 -13.19051 -13.11644 -12.98377 -12.91612 -12.86381 -12.76127 -12.47549 -12.33307 -12.24961 -12.20723 -12.11750 -12.00647 -11.89147 -11.70821 -11.55330 -11.45197 -11.14618 -10.63068 -10.36023 -9.43674 -9.26210 -8.24991 -6.38986 -0.64591 1.41321 1.44811 1.52878 1.88683 2.38712 2.81929 2.84667 2.98678 3.08306 3.29385 3.77890 3.90344 3.96017 4.06474 4.07011 4.11028 4.17276 4.20996 4.31972 4.40055 4.44328 4.54583 4.55577 4.61733 4.63750 4.69720 4.74571 4.77779 4.84337 4.89969 4.97739 4.99056 5.01022 5.06848 5.07632 5.25448 5.28306 5.29010 5.39082 5.48831 5.69436 5.94436 5.97114 6.07056 6.13771 6.16306 6.19636 6.74619 7.31069 8.87036 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031186 B = 0.002178 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.610113 B =12854.170084 C =13167.901174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 H 0.083 0.917 4 C -0.103 4.103 5 C 0.050 3.950 6 N -0.539 5.539 7 C 0.051 3.949 8 C 0.060 3.940 9 N -0.564 5.564 10 C 0.027 3.973 11 C 0.063 3.937 12 C 0.051 3.949 13 N -1.102 6.102 14 S 2.616 3.384 15 O -0.997 6.997 16 O -1.004 7.004 17 C -0.587 4.587 18 C 0.020 3.980 19 C -0.538 4.538 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.262 1.262 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.028 0.972 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.027 0.973 45 H 0.423 0.577 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.004 0.996 49 H 0.006 0.994 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -13.613 -25.854 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.031 3.969 3 H 0.101 0.899 4 C -0.143 4.143 5 C -0.078 4.078 6 N -0.264 5.264 7 C -0.077 4.077 8 C -0.068 4.068 9 N -0.289 5.289 10 C -0.121 4.121 11 C -0.065 4.065 12 C -0.077 4.077 13 N -0.863 5.863 14 S 2.713 3.287 15 O -0.987 6.987 16 O -0.994 6.994 17 C -0.719 4.719 18 C -0.019 4.019 19 C -0.576 4.576 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.260 0.740 46 H 0.162 0.838 47 H 0.161 0.839 48 H 0.022 0.978 49 H 0.024 0.976 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.841 -13.274 -25.376 28.894 hybrid contribution -0.781 0.295 0.864 1.202 sum 3.060 -12.979 -24.512 27.904 Atomic orbital electron populations 1.22464 0.93543 1.04096 1.03625 1.21056 0.95114 0.96575 0.84191 0.89884 1.21765 0.93593 1.02091 0.96810 1.22153 0.96611 0.98902 0.90092 1.62249 1.16887 1.09483 1.37757 1.22299 1.01758 0.86934 0.96759 1.22172 0.87370 1.00609 0.96662 1.62169 1.17937 1.09618 1.39207 1.22366 1.00799 0.99315 0.89611 1.22122 1.01179 0.87021 0.96217 1.22209 0.87854 1.00611 0.97015 1.55399 1.84151 1.19837 1.26959 1.04514 0.77374 0.73709 0.73138 1.93501 1.63382 1.61697 1.80087 1.93497 1.81200 1.60190 1.64538 1.30448 1.20798 1.11989 1.08703 1.18819 0.98387 0.94045 0.90625 1.21489 0.94599 1.30267 1.11289 0.90457 1.26137 1.00731 0.96872 0.96666 1.70103 1.29641 1.38800 1.18886 0.85360 0.78559 0.78568 0.77733 1.18802 1.21127 1.18661 0.89394 0.90394 0.92433 0.89715 0.88252 0.91255 0.95870 0.95409 0.88427 0.94027 0.89220 0.90860 0.90625 0.95273 0.94035 0.89470 0.89782 0.95491 0.74042 0.83817 0.83882 0.97796 0.97589 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.60 2.81 45.00 0.13 2.73 16 3 H 0.08 1.79 7.48 -2.39 -0.02 1.78 16 4 C -0.10 -1.57 4.75 30.59 0.15 -1.42 16 5 C 0.05 1.00 4.84 86.30 0.42 1.42 16 6 N -0.54 -9.83 4.71 -895.70 -4.22 -14.05 16 7 C 0.05 0.81 5.41 86.31 0.47 1.28 16 8 C 0.06 0.85 5.62 86.31 0.49 1.34 16 9 N -0.56 -8.87 4.97 -921.93 -4.58 -13.44 16 10 C 0.03 0.30 9.60 127.69 1.23 1.53 16 11 C 0.06 0.97 5.62 86.31 0.49 1.46 16 12 C 0.05 0.95 5.61 86.31 0.48 1.43 16 13 N -1.10 -25.47 4.81 -169.38 -0.82 -26.29 16 14 S 2.62 92.12 5.44 -56.49 -0.31 91.81 16 15 O -1.00 -41.27 17.39 -127.65 -2.22 -43.49 16 16 O -1.00 -42.26 18.08 -127.65 -2.31 -44.57 16 17 C -0.59 -21.72 5.16 71.98 0.37 -21.35 16 18 C 0.02 1.05 4.98 29.85 0.15 1.20 16 19 C -0.54 -29.57 9.11 25.60 0.23 -29.33 16 20 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 21 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 22 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 23 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.04 5.78 -2.39 -0.01 1.03 16 30 H 0.08 1.04 6.49 -2.39 -0.02 1.02 16 31 H 0.10 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.52 8.03 -2.38 -0.02 1.50 16 33 H 0.02 0.54 7.73 -2.39 -0.02 0.52 16 34 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.25 6.34 -2.39 -0.02 1.23 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 1.05 8.13 -2.39 -0.02 1.03 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.73 8.13 -2.38 -0.02 0.71 16 40 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.46 8.07 -2.39 -0.02 1.45 16 44 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.42 7.99 8.80 -96.74 -0.85 7.14 16 46 H 0.14 4.58 6.77 -2.39 -0.02 4.56 16 47 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 48 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 50 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.26 401.64 -6.35 -82.61 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.05 Total: 20.69 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 5.73 Total: -41.64 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -9.33 Total: -110.53 kcal Atomic # 8 Polarization: -83.54 SS G_CDS: -4.53 Total: -88.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.31 Total: 91.81 kcal Total: -76.26 -6.35 -82.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351597314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.177 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds