Wall clock time and date at job start Tue Mar 31 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.52997 * 109.47363 * 120.00209 * 2 1 3 5 5 C 1.52999 * 109.47154 * 184.99749 * 4 2 1 6 6 N 1.46899 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.46960 * 110.99692 * 293.79983 * 6 5 4 8 8 C 1.53055 * 109.36408 * 176.81123 * 7 6 5 9 9 N 1.46958 * 109.36170 * 58.40021 * 8 7 6 10 10 C 1.46907 * 110.99671 * 176.81242 * 9 8 7 11 11 C 1.46953 * 110.88445 * 300.68335 * 9 8 7 12 12 C 1.46962 * 111.00239 * 170.00432 * 6 5 4 13 13 N 1.46506 * 109.46871 * 240.00469 * 2 1 3 14 14 S 1.65600 * 119.99871 * 95.00111 * 13 2 1 15 15 O 1.42101 * 104.27882 * 308.92501 * 14 13 2 16 16 O 1.42102 * 104.27187 * 181.06876 * 14 13 2 17 17 C 1.81399 * 104.45301 * 64.99838 * 14 13 2 18 18 C 1.52996 * 109.47218 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47142 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99914 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00479 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00370 * 23 21 19 26 26 H 1.48504 * 109.47330 * 330.00494 * 23 21 19 27 27 H 1.09003 * 109.46641 * 299.99543 * 1 2 3 28 28 H 1.09005 * 109.47307 * 59.99555 * 1 2 3 29 29 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46905 * 304.99879 * 4 2 1 31 31 H 1.09000 * 109.46996 * 64.99687 * 4 2 1 32 32 H 1.08998 * 109.47321 * 299.99875 * 5 4 2 33 33 H 1.09000 * 109.47220 * 60.00075 * 5 4 2 34 34 H 1.09005 * 109.49292 * 296.77743 * 7 6 5 35 35 H 1.09001 * 109.49230 * 56.84558 * 7 6 5 36 36 H 1.08999 * 109.49035 * 298.43711 * 8 7 6 37 37 H 1.08998 * 109.50543 * 178.37686 * 8 7 6 38 38 H 1.09001 * 109.46602 * 183.80214 * 10 9 8 39 39 H 1.09003 * 109.47038 * 303.79752 * 10 9 8 40 40 H 1.08994 * 109.47053 * 63.79990 * 10 9 8 41 41 H 1.09007 * 109.48339 * 299.35295 * 11 9 8 42 42 H 1.08999 * 109.51155 * 179.30380 * 11 9 8 43 43 H 1.08998 * 109.48047 * 303.15237 * 12 6 5 44 44 H 1.08999 * 109.48823 * 63.21736 * 12 6 5 45 45 H 0.97002 * 119.99684 * 274.99570 * 13 2 1 46 46 H 1.09001 * 109.46838 * 300.00058 * 17 14 13 47 47 H 1.08998 * 109.46934 * 59.99858 * 17 14 13 48 48 H 1.09004 * 109.47227 * 300.00383 * 18 17 14 49 49 H 1.09001 * 109.46834 * 59.99744 * 18 17 14 50 50 H 0.97002 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0546 -1.3064 2.5126 7 6 3.6071 -0.6241 3.7349 8 6 4.0696 -1.4192 4.9582 9 7 5.5337 -1.5432 4.9337 10 6 6.0234 -2.2363 6.1328 11 6 5.9813 -2.2253 3.7114 12 6 5.5188 -1.4303 2.4882 13 7 2.0183 -0.6906 -1.1963 14 16 2.4121 0.1774 -2.5505 15 8 1.2750 0.9968 -2.7846 16 8 2.8122 -0.8074 -3.4937 17 6 3.8313 1.1874 -2.0441 18 6 4.2941 2.0446 -3.2239 19 6 5.4734 2.8832 -2.8034 20 1 5.8544 2.8122 -1.7953 21 6 6.0653 3.7419 -3.7052 22 7 7.0942 4.4742 -3.3380 23 14 5.4058 3.8652 -5.4486 24 1 4.3612 4.9191 -5.5092 25 1 6.5141 4.2130 -6.3737 26 1 4.8176 2.5617 -5.8487 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2055 32 1 3.9995 -1.0728 0.4258 33 1 3.8533 0.4369 1.3572 34 1 4.0348 0.3779 3.7695 35 1 2.5192 -0.5557 3.7357 36 1 3.6202 -2.4120 4.9378 37 1 3.7637 -0.9001 5.8665 38 1 7.1132 -2.2549 6.1220 39 1 5.6778 -1.7105 7.0229 40 1 5.6426 -3.2575 6.1432 41 1 5.5535 -3.2274 3.6769 42 1 7.0691 -2.2942 3.7104 43 1 5.8245 -1.9497 1.5800 44 1 5.9682 -0.4375 2.5086 45 1 2.1110 -1.6561 -1.1950 46 1 3.5399 1.8343 -1.2166 47 1 4.6458 0.5363 -1.7269 48 1 4.5854 1.3973 -4.0511 49 1 3.4795 2.6956 -3.5415 50 1 7.5108 5.0780 -3.9727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351597315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:07 Heat of formation + Delta-G solvation = -72.845851 kcal Electronic energy + Delta-G solvation = -27860.943737 eV Core-core repulsion = 24049.919694 eV Total energy + Delta-G solvation = -3811.024043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.61677 -37.55743 -36.64025 -35.58446 -35.38156 -33.96429 -31.50386 -31.38923 -30.94340 -29.60001 -27.37854 -25.99046 -24.36570 -23.79587 -22.38021 -21.40477 -20.99576 -19.99680 -19.10141 -17.68685 -16.90512 -16.63158 -16.15414 -15.59372 -15.50296 -15.26341 -15.13195 -15.01285 -14.70679 -14.38792 -14.27532 -13.82445 -13.66688 -13.41423 -13.03616 -12.81886 -12.77078 -12.54853 -12.33628 -12.11081 -11.92692 -11.72803 -11.68441 -11.63755 -11.54532 -11.49587 -11.30171 -11.22964 -11.19517 -11.03385 -10.79263 -10.71463 -10.44833 -10.16272 -9.82327 -9.50496 -9.17377 -8.71425 -8.67126 -8.49447 -6.17489 -4.18754 0.67683 3.03051 3.25942 3.33405 3.37636 3.58922 3.65145 4.13400 4.35098 4.55295 4.57724 4.62470 4.72077 4.79038 4.89132 4.93365 5.04584 5.12257 5.14075 5.19123 5.21647 5.25871 5.26093 5.30735 5.44894 5.47383 5.50669 5.53667 5.56137 5.58545 5.67317 5.70610 5.73776 5.79787 5.83690 5.96639 6.20051 6.23636 6.28531 6.64215 6.67416 6.80415 6.88279 6.89529 6.91979 7.08658 7.53889 8.35397 8.83405 9.42274 10.94850 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003251 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.386446 B = 8611.116003 C =10459.040366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.151 3.849 3 H 0.084 0.916 4 C -0.119 4.119 5 C 0.048 3.952 6 N -0.540 5.540 7 C 0.051 3.949 8 C 0.058 3.942 9 N -0.547 5.547 10 C 0.026 3.974 11 C 0.058 3.942 12 C 0.053 3.947 13 N -1.120 6.120 14 S 2.589 3.411 15 O -0.965 6.965 16 O -0.968 6.968 17 C -0.584 4.584 18 C -0.006 4.006 19 C -0.519 4.519 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.413 0.587 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.032 0.968 49 H 0.028 0.972 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 -14.139 17.509 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.043 3.957 3 H 0.102 0.898 4 C -0.159 4.159 5 C -0.080 4.080 6 N -0.264 5.264 7 C -0.077 4.077 8 C -0.071 4.071 9 N -0.272 5.272 10 C -0.122 4.122 11 C -0.070 4.070 12 C -0.075 4.075 13 N -0.877 5.877 14 S 2.686 3.314 15 O -0.955 6.955 16 O -0.959 6.959 17 C -0.717 4.717 18 C -0.045 4.045 19 C -0.558 4.558 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.186 1.186 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.247 0.753 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.050 0.950 49 H 0.046 0.954 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.665 -13.880 16.619 23.322 hybrid contribution 0.372 -0.041 -0.302 0.481 sum -8.293 -13.921 16.317 22.996 Atomic orbital electron populations 1.22297 0.94870 1.02545 1.03141 1.20731 0.94601 0.95918 0.84420 0.89767 1.21910 0.94940 1.01970 0.97037 1.22215 0.95492 0.97381 0.92914 1.62183 1.10802 1.51332 1.02119 1.22232 1.00311 0.96072 0.89070 1.22165 0.87298 0.99499 0.98095 1.62144 1.11098 1.51452 1.02476 1.22340 1.00893 0.96321 0.92691 1.22166 1.00094 0.95739 0.89003 1.22183 0.87384 1.00029 0.97903 1.55855 1.82513 1.19241 1.30139 1.05616 0.77206 0.75201 0.73389 1.93549 1.47767 1.70481 1.83680 1.93560 1.84684 1.58431 1.59194 1.30317 1.17228 1.13309 1.10837 1.19394 0.98671 0.95146 0.91335 1.20836 1.12592 1.22252 1.00114 0.90469 1.24985 0.94549 0.94889 0.98673 1.69883 1.22069 1.25641 1.35732 0.86931 0.79200 0.79550 0.84807 1.19675 1.20768 1.18607 0.91825 0.90744 0.92270 0.90645 0.90360 0.90078 0.93957 0.93730 0.89961 0.94100 0.90439 0.91305 0.91409 0.95674 0.94044 0.90243 0.89938 0.93488 0.75296 0.85918 0.85618 0.94972 0.95397 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.52 37.16 0.35 -1.31 16 2 C 0.15 1.53 2.68 -67.93 -0.18 1.35 16 3 H 0.08 0.86 7.15 -51.93 -0.37 0.49 16 4 C -0.12 -1.00 4.75 -26.73 -0.13 -1.13 16 5 C 0.05 0.47 4.84 -3.83 -0.02 0.45 16 6 N -0.54 -5.30 4.71 -234.46 -1.10 -6.40 16 7 C 0.05 0.46 5.41 -3.76 -0.02 0.44 16 8 C 0.06 0.48 5.62 -3.76 -0.02 0.46 16 9 N -0.55 -5.05 4.97 -242.75 -1.21 -6.25 16 10 C 0.03 0.19 9.60 60.07 0.58 0.76 16 11 C 0.06 0.53 5.62 -3.77 -0.02 0.51 16 12 C 0.05 0.54 5.61 -3.77 -0.02 0.52 16 13 N -1.12 -12.96 4.81 -4.89 -0.02 -12.98 16 14 S 2.59 42.42 5.38 -107.50 -0.58 41.84 16 15 O -0.96 -18.31 17.11 -57.54 -0.98 -19.29 16 16 O -0.97 -18.73 18.08 -57.54 -1.04 -19.77 16 17 C -0.58 -10.34 5.90 37.16 0.22 -10.12 16 18 C -0.01 -0.14 4.05 -27.89 -0.11 -0.26 16 19 C -0.52 -14.33 9.66 -34.44 -0.33 -14.66 16 20 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 23 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.90 7.43 -51.93 -0.39 0.51 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.55 6.49 -51.93 -0.34 0.22 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.82 7.64 -51.93 -0.40 0.42 16 33 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.62 6.34 -51.93 -0.33 0.30 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.41 4.01 8.80 -34.48 -0.30 3.71 16 46 H 0.12 1.95 7.44 -51.92 -0.39 1.56 16 47 H 0.13 2.02 8.14 -51.92 -0.42 1.60 16 48 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 49 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 50 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -34.46 400.33 -11.80 -46.26 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -9.20 Total: 0.99 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 0.20 Total: -21.03 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -1.56 Total: -51.79 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.02 Total: -39.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 42.42 SS G_CDS: -0.58 Total: 41.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.46 -11.80 -46.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351597315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.586 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds