Wall clock time and date at job start Tue Mar 31 2020 17:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.52997 * 109.47363 * 120.00209 * 2 1 3 5 5 C 1.52999 * 109.47154 * 184.99749 * 4 2 1 6 6 N 1.46899 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.46960 * 110.99692 * 293.79983 * 6 5 4 8 8 C 1.53055 * 109.36408 * 176.81123 * 7 6 5 9 9 N 1.46958 * 109.36170 * 58.40021 * 8 7 6 10 10 C 1.46907 * 110.99671 * 176.81242 * 9 8 7 11 11 C 1.46953 * 110.88445 * 300.68335 * 9 8 7 12 12 C 1.46962 * 111.00239 * 170.00432 * 6 5 4 13 13 N 1.46506 * 109.46871 * 240.00469 * 2 1 3 14 14 S 1.65600 * 119.99871 * 95.00111 * 13 2 1 15 15 O 1.42101 * 104.27882 * 308.92501 * 14 13 2 16 16 O 1.42102 * 104.27187 * 181.06876 * 14 13 2 17 17 C 1.81399 * 104.45301 * 64.99838 * 14 13 2 18 18 C 1.52996 * 109.47218 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47142 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99914 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00479 * 23 21 19 25 25 H 1.48504 * 109.47204 * 210.00370 * 23 21 19 26 26 H 1.48504 * 109.47330 * 330.00494 * 23 21 19 27 27 H 1.09003 * 109.46641 * 299.99543 * 1 2 3 28 28 H 1.09005 * 109.47307 * 59.99555 * 1 2 3 29 29 H 1.08997 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46905 * 304.99879 * 4 2 1 31 31 H 1.09000 * 109.46996 * 64.99687 * 4 2 1 32 32 H 1.08998 * 109.47321 * 299.99875 * 5 4 2 33 33 H 1.09000 * 109.47220 * 60.00075 * 5 4 2 34 34 H 1.09005 * 109.49292 * 296.77743 * 7 6 5 35 35 H 1.09001 * 109.49230 * 56.84558 * 7 6 5 36 36 H 1.08999 * 109.49035 * 298.43711 * 8 7 6 37 37 H 1.08998 * 109.50543 * 178.37686 * 8 7 6 38 38 H 1.09001 * 109.46602 * 183.80214 * 10 9 8 39 39 H 1.09003 * 109.47038 * 303.79752 * 10 9 8 40 40 H 1.08994 * 109.47053 * 63.79990 * 10 9 8 41 41 H 1.09007 * 109.48339 * 299.35295 * 11 9 8 42 42 H 1.08999 * 109.51155 * 179.30380 * 11 9 8 43 43 H 1.08998 * 109.48047 * 303.15237 * 12 6 5 44 44 H 1.08999 * 109.48823 * 63.21736 * 12 6 5 45 45 H 0.97002 * 119.99684 * 274.99570 * 13 2 1 46 46 H 1.09001 * 109.46838 * 300.00058 * 17 14 13 47 47 H 1.08998 * 109.46934 * 59.99858 * 17 14 13 48 48 H 1.09004 * 109.47227 * 300.00383 * 18 17 14 49 49 H 1.09001 * 109.46834 * 59.99744 * 18 17 14 50 50 H 0.97002 * 119.99491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0546 -1.3064 2.5126 7 6 3.6071 -0.6241 3.7349 8 6 4.0696 -1.4192 4.9582 9 7 5.5337 -1.5432 4.9337 10 6 6.0234 -2.2363 6.1328 11 6 5.9813 -2.2253 3.7114 12 6 5.5188 -1.4303 2.4882 13 7 2.0183 -0.6906 -1.1963 14 16 2.4121 0.1774 -2.5505 15 8 1.2750 0.9968 -2.7846 16 8 2.8122 -0.8074 -3.4937 17 6 3.8313 1.1874 -2.0441 18 6 4.2941 2.0446 -3.2239 19 6 5.4734 2.8832 -2.8034 20 1 5.8544 2.8122 -1.7953 21 6 6.0653 3.7419 -3.7052 22 7 7.0942 4.4742 -3.3380 23 14 5.4058 3.8652 -5.4486 24 1 4.3612 4.9191 -5.5092 25 1 6.5141 4.2130 -6.3737 26 1 4.8176 2.5617 -5.8487 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2055 32 1 3.9995 -1.0728 0.4258 33 1 3.8533 0.4369 1.3572 34 1 4.0348 0.3779 3.7695 35 1 2.5192 -0.5557 3.7357 36 1 3.6202 -2.4120 4.9378 37 1 3.7637 -0.9001 5.8665 38 1 7.1132 -2.2549 6.1220 39 1 5.6778 -1.7105 7.0229 40 1 5.6426 -3.2575 6.1432 41 1 5.5535 -3.2274 3.6769 42 1 7.0691 -2.2942 3.7104 43 1 5.8245 -1.9497 1.5800 44 1 5.9682 -0.4375 2.5086 45 1 2.1110 -1.6561 -1.1950 46 1 3.5399 1.8343 -1.2166 47 1 4.6458 0.5363 -1.7269 48 1 4.5854 1.3973 -4.0511 49 1 3.4795 2.6956 -3.5415 50 1 7.5108 5.0780 -3.9727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351597315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:06 Heat of formation + Delta-G solvation = -100.947737 kcal Electronic energy + Delta-G solvation = -27862.162326 eV Core-core repulsion = 24049.919694 eV Total energy + Delta-G solvation = -3812.242632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34017 -38.47094 -37.98548 -36.99934 -36.18536 -35.89413 -33.47634 -32.19491 -31.72117 -30.39040 -28.06740 -27.87489 -25.04268 -24.51883 -23.25650 -23.12161 -21.85976 -20.73436 -20.37755 -19.40135 -18.48295 -17.52668 -17.08112 -16.99053 -16.46824 -16.30462 -16.20169 -15.97488 -15.78388 -15.48285 -15.22378 -15.06663 -14.85270 -14.68377 -14.20336 -13.85681 -13.80434 -13.42556 -13.41510 -13.20385 -13.10907 -13.06649 -13.02722 -12.94448 -12.78994 -12.56983 -12.31737 -12.25128 -12.22215 -12.03142 -11.94001 -11.78050 -11.71773 -11.60772 -11.43592 -11.24711 -10.84514 -10.36167 -9.42457 -9.24682 -8.36703 -6.42225 -0.67944 1.31615 1.33592 1.43610 1.84134 2.29253 2.77540 2.85637 2.97435 2.99889 3.27758 3.78100 3.89425 3.91776 3.98192 4.06996 4.09597 4.13856 4.23000 4.34751 4.37031 4.47433 4.50004 4.56588 4.57928 4.62245 4.64112 4.71155 4.76216 4.85208 4.91914 4.98863 4.99255 5.01056 5.05392 5.07484 5.09751 5.11730 5.25286 5.43006 5.47081 5.47746 5.96501 5.98115 6.14882 6.16554 6.17760 6.21198 6.63761 7.22168 8.78831 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003251 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.386446 B = 8611.116003 C =10459.040366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 H 0.082 0.918 4 C -0.106 4.106 5 C 0.043 3.957 6 N -0.538 5.538 7 C 0.050 3.950 8 C 0.059 3.941 9 N -0.565 5.565 10 C 0.027 3.973 11 C 0.062 3.938 12 C 0.051 3.949 13 N -1.101 6.101 14 S 2.621 3.379 15 O -0.988 6.988 16 O -0.996 6.996 17 C -0.590 4.590 18 C -0.016 4.016 19 C -0.525 4.525 20 H 0.048 0.952 21 C 0.013 3.987 22 N -0.940 5.940 23 Si 0.924 3.076 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.249 1.249 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.426 0.574 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.031 0.969 49 H 0.031 0.969 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -15.524 18.248 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.084 4.084 6 N -0.263 5.263 7 C -0.078 4.078 8 C -0.069 4.069 9 N -0.290 5.290 10 C -0.121 4.121 11 C -0.066 4.066 12 C -0.077 4.077 13 N -0.863 5.863 14 S 2.716 3.284 15 O -0.977 6.977 16 O -0.986 6.986 17 C -0.721 4.721 18 C -0.055 4.055 19 C -0.564 4.564 20 H 0.067 0.933 21 C -0.185 4.185 22 N -0.580 5.580 23 Si 0.747 3.253 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.173 1.173 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.044 0.956 45 H 0.263 0.737 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.472 -15.273 17.367 25.388 hybrid contribution 0.947 0.365 -0.386 1.085 sum -9.525 -14.908 16.981 24.522 Atomic orbital electron populations 1.22289 0.94109 1.03367 1.03020 1.20986 0.95204 0.96016 0.84162 0.89946 1.21814 0.93567 1.02527 0.96625 1.22261 0.96686 0.96551 0.92947 1.62240 1.10381 1.51222 1.02430 1.22309 1.01267 0.95213 0.88987 1.22182 0.86870 0.99517 0.98285 1.62164 1.11741 1.52077 1.03050 1.22366 1.01084 0.96492 0.92155 1.22110 1.00370 0.95407 0.88698 1.22196 0.87759 0.99089 0.98673 1.55421 1.81785 1.19637 1.29500 1.04452 0.75978 0.74400 0.73574 1.93523 1.48247 1.71456 1.84499 1.93517 1.84949 1.59035 1.61122 1.30315 1.18931 1.13600 1.09270 1.19349 0.97171 0.95454 0.93511 1.21161 1.13740 1.22577 0.98946 0.93343 1.25869 0.94859 0.94740 1.03041 1.70012 1.23711 1.26879 1.37374 0.86034 0.79073 0.80330 0.79853 1.18508 1.19994 1.17305 0.89674 0.93165 0.91014 0.88871 0.89282 0.90540 0.95308 0.95369 0.88177 0.94030 0.89207 0.91053 0.90549 0.95226 0.93989 0.89812 0.89808 0.95563 0.73721 0.84448 0.84401 0.95110 0.95063 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.52 71.98 0.69 -2.16 16 2 C 0.14 2.56 2.68 44.99 0.12 2.68 16 3 H 0.08 1.53 7.15 -2.39 -0.02 1.52 16 4 C -0.11 -1.49 4.75 30.59 0.15 -1.34 16 5 C 0.04 0.80 4.84 86.30 0.42 1.22 16 6 N -0.54 -9.89 4.71 -895.71 -4.22 -14.11 16 7 C 0.05 0.82 5.41 86.31 0.47 1.29 16 8 C 0.06 0.90 5.62 86.31 0.49 1.38 16 9 N -0.57 -9.80 4.97 -921.94 -4.58 -14.38 16 10 C 0.03 0.35 9.60 127.69 1.23 1.57 16 11 C 0.06 1.09 5.62 86.31 0.49 1.57 16 12 C 0.05 1.02 5.61 86.30 0.48 1.51 16 13 N -1.10 -23.24 4.81 -169.38 -0.82 -24.05 16 14 S 2.62 82.48 5.38 -56.49 -0.30 82.17 16 15 O -0.99 -36.22 17.11 -127.65 -2.18 -38.41 16 16 O -1.00 -37.26 18.08 -127.65 -2.31 -39.57 16 17 C -0.59 -20.54 5.90 71.98 0.42 -20.11 16 18 C -0.02 -0.74 4.05 29.85 0.12 -0.61 16 19 C -0.53 -29.53 9.66 25.60 0.25 -29.28 16 20 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 21 C 0.01 0.78 5.47 84.66 0.46 1.24 16 22 N -0.94 -57.80 13.96 21.45 0.30 -57.50 16 23 Si 0.92 43.87 27.47 68.60 1.88 45.75 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.12 7.43 -2.38 -0.02 1.10 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.03 6.49 -2.39 -0.02 1.02 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.46 7.64 -2.39 -0.02 1.44 16 33 H 0.03 0.60 8.12 -2.39 -0.02 0.59 16 34 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.10 1.25 6.34 -2.39 -0.02 1.23 16 36 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 1.12 8.13 -2.39 -0.02 1.10 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 40 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 44 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.43 7.20 8.80 -96.74 -0.85 6.35 16 46 H 0.14 4.30 7.44 -2.39 -0.02 4.28 16 47 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 48 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 49 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 50 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -74.43 400.33 -6.46 -80.89 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.01 Total: 20.27 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 5.77 Total: -41.05 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -9.31 Total: -110.05 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -4.49 Total: -77.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 16 Polarization: 82.48 SS G_CDS: -0.30 Total: 82.17 kcal Total: -74.43 -6.46 -80.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351597315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds