Wall clock time and date at job start Tue Mar 31 2020 17:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46802 * 2 1 4 4 C 1.53007 * 109.47349 * 240.00325 * 2 1 3 5 5 C 1.53117 * 109.52131 * 179.68470 * 4 2 1 6 6 C 1.53035 * 109.27615 * 182.43801 * 5 4 2 7 7 N 1.46849 * 109.52499 * 59.17666 * 6 5 4 8 8 C 1.46897 * 111.00323 * 174.16052 * 7 6 5 9 9 C 1.46852 * 111.20009 * 298.26105 * 7 6 5 10 10 C 1.53040 * 109.52158 * 61.73703 * 9 7 6 11 11 N 1.46498 * 109.47083 * 120.00054 * 2 1 3 12 12 C 1.46504 * 119.99949 * 61.53626 * 11 2 1 13 13 S 1.65602 * 119.99838 * 241.53303 * 11 2 1 14 14 O 1.42099 * 106.39915 * 210.35058 * 13 11 2 15 15 O 1.42094 * 106.40162 * 343.27270 * 13 11 2 16 16 N 1.65596 * 107.21580 * 96.81597 * 13 11 2 17 17 C 1.46507 * 120.00168 * 83.91919 * 16 13 11 18 18 C 1.46507 * 119.99901 * 263.91554 * 16 13 11 19 19 C 1.50697 * 109.46941 * 101.01577 * 18 16 13 20 20 H 1.08000 * 120.00026 * 4.75485 * 19 18 16 21 21 C 1.37876 * 120.00070 * 184.76222 * 19 18 16 22 22 N 1.31516 * 119.99822 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47430 * 59.99820 * 23 21 19 25 25 H 1.48501 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47346 * 299.99590 * 23 21 19 27 27 H 1.09009 * 109.47121 * 54.38765 * 1 2 3 28 28 H 1.08992 * 109.47254 * 294.38568 * 1 2 3 29 29 H 1.09005 * 109.47090 * 174.38317 * 1 2 3 30 30 H 1.08997 * 109.51779 * 299.87411 * 4 2 1 31 31 H 1.08996 * 109.50165 * 302.37414 * 5 4 2 32 32 H 1.08994 * 109.50345 * 62.49956 * 5 4 2 33 33 H 1.09002 * 109.46333 * 299.16447 * 6 5 4 34 34 H 1.09001 * 109.46337 * 179.19283 * 6 5 4 35 35 H 1.09005 * 109.47204 * 184.20978 * 8 7 6 36 36 H 1.09005 * 109.47220 * 304.21223 * 8 7 6 37 37 H 1.09001 * 109.46963 * 64.21250 * 8 7 6 38 38 H 1.09005 * 109.45658 * 301.72543 * 9 7 6 39 39 H 1.08998 * 109.46325 * 181.75580 * 9 7 6 40 40 H 1.09000 * 109.49924 * 180.88069 * 10 9 7 41 41 H 1.08994 * 109.53476 * 60.78569 * 10 9 7 42 42 H 1.08998 * 109.47341 * 90.00115 * 12 11 2 43 43 H 1.09003 * 109.46854 * 210.00258 * 12 11 2 44 44 H 1.09000 * 109.46914 * 329.99664 * 12 11 2 45 45 H 1.08996 * 109.47157 * 89.99742 * 17 16 13 46 46 H 1.09000 * 109.46566 * 209.99619 * 17 16 13 47 47 H 1.08996 * 109.46762 * 329.99552 * 17 16 13 48 48 H 1.08999 * 109.46662 * 221.01041 * 18 16 13 49 49 H 1.08993 * 109.46638 * 341.01707 * 18 16 13 50 50 H 0.97000 * 119.99564 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5712 -0.7150 -1.2544 6 6 4.0749 -1.3836 -2.5355 7 7 3.5606 -0.6568 -3.7033 8 6 4.1349 -1.1859 -4.9476 9 6 2.0931 -0.6896 -3.7453 10 6 1.5303 -0.0003 -2.5002 11 7 2.0183 -0.6906 1.1962 12 6 1.6923 -2.1027 1.4111 13 16 2.9388 0.1249 2.3052 14 8 3.8079 -0.8357 2.8892 15 8 3.4034 1.2997 1.6549 16 7 1.9215 0.6289 3.5108 17 6 1.5719 -0.2827 4.6032 18 6 1.3711 1.9864 3.4850 19 6 -0.0462 1.9441 2.9746 20 1 -0.5184 0.9946 2.7700 21 6 -0.7400 3.1176 2.7686 22 7 -0.1651 4.2739 3.0181 23 14 -2.4966 3.0653 2.1353 24 1 -3.3453 2.3098 3.0915 25 1 -3.0157 4.4501 2.0006 26 1 -2.5255 2.3943 0.8108 27 1 -0.3634 0.5985 -0.8355 28 1 -0.3633 0.4243 0.9359 29 1 -0.3633 -1.0228 -0.1006 30 1 1.6790 -1.7496 -1.2490 31 1 3.9310 0.3131 -1.2149 32 1 3.9402 -1.2639 -0.3881 33 1 3.7261 -2.4158 -2.5677 34 1 5.1647 -1.3680 -2.5490 35 1 3.7956 -0.5826 -5.7897 36 1 5.2228 -1.1501 -4.8897 37 1 3.8122 -2.2178 -5.0866 38 1 1.7537 -1.7251 -3.7718 39 1 1.7436 -0.1700 -4.6374 40 1 0.4412 -0.0386 -2.5241 41 1 1.8574 1.0392 -2.4799 42 1 2.4632 -2.7265 0.9587 43 1 1.6424 -2.3052 2.4810 44 1 0.7287 -2.3268 0.9536 45 1 2.2920 -0.1713 5.4138 46 1 0.5731 -0.0448 4.9692 47 1 1.5905 -1.3099 4.2392 48 1 1.3822 2.4020 4.4925 49 1 1.9756 2.6110 2.8274 50 1 -0.6534 5.0994 2.8735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351924326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:46 Heat of formation + Delta-G solvation = -75.233154 kcal Electronic energy + Delta-G solvation = -29867.640877 eV Core-core repulsion = 26056.513313 eV Total energy + Delta-G solvation = -3811.127564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.44571 -36.88958 -36.62288 -35.46539 -35.17159 -33.20711 -32.47879 -31.00938 -29.81511 -27.74516 -26.52153 -26.12135 -25.09712 -23.37986 -22.88435 -22.21653 -20.65237 -19.48718 -18.31611 -17.27491 -16.81056 -16.40116 -16.06196 -15.67179 -15.13789 -14.84496 -14.70887 -14.33068 -14.09384 -13.73218 -13.62996 -13.47799 -13.20210 -13.00515 -12.57617 -12.49433 -12.43448 -12.29226 -12.13703 -12.02941 -11.82664 -11.64686 -11.50113 -11.39541 -11.17624 -11.14330 -11.12847 -11.08593 -10.93579 -10.70624 -10.52046 -10.34816 -10.21751 -10.19247 -9.98880 -9.68444 -8.65488 -8.48696 -8.40119 -7.99334 -6.10362 -4.16554 1.28398 3.24616 3.30787 3.31342 3.49322 3.85626 4.14300 4.35759 4.74581 4.79607 4.86821 4.99376 5.07344 5.15419 5.22990 5.25598 5.29544 5.39818 5.46366 5.51744 5.55020 5.64552 5.67991 5.69206 5.77875 5.79430 5.82472 5.89433 5.93544 6.04285 6.07915 6.09787 6.15258 6.23923 6.29675 6.31471 6.48027 6.57854 6.72140 6.86827 6.98291 7.00784 7.02619 7.35473 7.44952 7.67029 7.86570 8.17291 8.87383 9.48484 10.97743 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.004884 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.043843 B = 5731.971448 C = 7077.538403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.157 3.843 3 H 0.107 0.893 4 C -0.091 4.091 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.544 5.544 8 C 0.026 3.974 9 C 0.059 3.941 10 C -0.114 4.114 11 N -1.001 6.001 12 C 0.099 3.901 13 S 2.782 3.218 14 O -1.000 7.000 15 O -0.973 6.973 16 N -0.998 5.998 17 C 0.106 3.894 18 C 0.243 3.757 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.888 5.888 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.273 1.273 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.032 0.968 49 H 0.057 0.943 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -12.892 -10.111 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.051 3.949 3 H 0.124 0.876 4 C -0.111 4.111 5 C -0.155 4.155 6 C -0.069 4.069 7 N -0.268 5.268 8 C -0.122 4.122 9 C -0.069 4.069 10 C -0.152 4.152 11 N -0.839 5.839 12 C -0.047 4.047 13 S 2.791 3.209 14 O -0.984 6.984 15 O -0.957 6.957 16 N -0.840 5.840 17 C -0.041 4.041 18 C 0.121 3.879 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.961 -12.051 -10.079 16.202 hybrid contribution -1.814 -0.947 -0.368 2.079 sum 2.147 -12.998 -10.447 16.813 Atomic orbital electron populations 1.22329 0.94865 1.01125 1.04546 1.20855 0.94701 0.96793 0.82561 0.87553 1.21512 0.95429 0.99684 0.94491 1.21673 0.95407 1.02453 0.95960 1.22084 0.99607 0.94738 0.90433 1.61910 1.07155 1.55291 1.02474 1.22337 1.00225 0.97446 0.92209 1.22088 0.87060 0.98758 0.98990 1.21690 1.00074 1.00749 0.92704 1.57964 1.71070 1.19430 1.35456 1.21305 1.00938 0.81379 1.01040 1.01891 0.73689 0.72546 0.72726 1.93533 1.63414 1.63529 1.77923 1.93567 1.79373 1.47770 1.75038 1.57698 1.66297 1.23378 1.36591 1.21236 1.01614 0.91202 0.90006 1.19226 0.94189 0.75689 0.98756 1.21468 0.98290 0.92692 1.45069 0.91800 1.24938 0.98104 0.95345 0.95361 1.69924 1.37291 0.97489 1.47916 0.86706 0.84790 0.77206 0.79584 1.20319 1.21249 1.19854 0.92038 0.89379 0.93385 0.91354 0.90268 0.91721 0.95207 0.90919 0.91483 0.91503 0.96037 0.95229 0.90899 0.90888 0.90446 0.93275 0.91965 0.91294 0.93801 0.90691 0.93285 0.95030 0.92554 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.57 37.16 0.32 -2.33 16 2 C 0.16 2.51 2.25 -67.93 -0.15 2.36 16 3 H 0.11 2.01 6.73 -51.93 -0.35 1.66 16 4 C -0.09 -1.20 1.68 -90.50 -0.15 -1.35 16 5 C -0.12 -1.62 5.18 -26.65 -0.14 -1.76 16 6 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 7 N -0.54 -6.32 4.91 -242.95 -1.19 -7.52 16 8 C 0.03 0.24 9.59 60.06 0.58 0.82 16 9 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 10 C -0.11 -1.38 4.95 -26.65 -0.13 -1.51 16 11 N -1.00 -16.44 2.43 -114.60 -0.28 -16.72 16 12 C 0.10 1.30 9.30 59.85 0.56 1.86 16 13 S 2.78 56.06 5.97 -107.50 -0.64 55.42 16 14 O -1.00 -20.87 16.75 -57.17 -0.96 -21.83 16 15 O -0.97 -22.56 14.92 -57.17 -0.85 -23.41 16 16 N -1.00 -20.77 3.25 -123.05 -0.40 -21.17 16 17 C 0.11 1.83 10.27 59.85 0.61 2.45 16 18 C 0.24 6.03 5.45 -5.19 -0.03 6.00 16 19 C -0.54 -13.60 8.53 -34.44 -0.29 -13.89 16 20 H 0.06 1.55 6.42 -52.49 -0.34 1.21 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 23 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H 0.06 0.90 6.81 -51.92 -0.35 0.55 16 28 H 0.09 1.64 5.84 -51.93 -0.30 1.34 16 29 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 30 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.79 6.53 -51.93 -0.34 0.45 16 44 H 0.07 0.78 6.62 -51.93 -0.34 0.43 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 47 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 48 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 1.55 6.76 -51.93 -0.35 1.19 16 50 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -30.62 389.68 -10.55 -41.17 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.84 Total: 1.81 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 1.03 Total: -4.43 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.13 Total: -69.74 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.81 Total: -45.24 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 56.06 SS G_CDS: -0.64 Total: 55.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.62 -10.55 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351924326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.064 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds