Wall clock time and date at job start Tue Mar 31 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46802 * 2 1 4 4 C 1.53007 * 109.47349 * 240.00325 * 2 1 3 5 5 C 1.53117 * 109.52131 * 179.68470 * 4 2 1 6 6 C 1.53035 * 109.27615 * 182.43801 * 5 4 2 7 7 N 1.46849 * 109.52499 * 59.17666 * 6 5 4 8 8 C 1.46897 * 111.00323 * 174.16052 * 7 6 5 9 9 C 1.46852 * 111.20009 * 298.26105 * 7 6 5 10 10 C 1.53040 * 109.52158 * 61.73703 * 9 7 6 11 11 N 1.46498 * 109.47083 * 120.00054 * 2 1 3 12 12 C 1.46504 * 119.99949 * 61.53626 * 11 2 1 13 13 S 1.65602 * 119.99838 * 241.53303 * 11 2 1 14 14 O 1.42099 * 106.39915 * 210.35058 * 13 11 2 15 15 O 1.42094 * 106.40162 * 343.27270 * 13 11 2 16 16 N 1.65596 * 107.21580 * 96.81597 * 13 11 2 17 17 C 1.46507 * 120.00168 * 83.91919 * 16 13 11 18 18 C 1.46507 * 119.99901 * 263.91554 * 16 13 11 19 19 C 1.50697 * 109.46941 * 101.01577 * 18 16 13 20 20 H 1.08000 * 120.00026 * 4.75485 * 19 18 16 21 21 C 1.37876 * 120.00070 * 184.76222 * 19 18 16 22 22 N 1.31516 * 119.99822 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47430 * 59.99820 * 23 21 19 25 25 H 1.48501 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47346 * 299.99590 * 23 21 19 27 27 H 1.09009 * 109.47121 * 54.38765 * 1 2 3 28 28 H 1.08992 * 109.47254 * 294.38568 * 1 2 3 29 29 H 1.09005 * 109.47090 * 174.38317 * 1 2 3 30 30 H 1.08997 * 109.51779 * 299.87411 * 4 2 1 31 31 H 1.08996 * 109.50165 * 302.37414 * 5 4 2 32 32 H 1.08994 * 109.50345 * 62.49956 * 5 4 2 33 33 H 1.09002 * 109.46333 * 299.16447 * 6 5 4 34 34 H 1.09001 * 109.46337 * 179.19283 * 6 5 4 35 35 H 1.09005 * 109.47204 * 184.20978 * 8 7 6 36 36 H 1.09005 * 109.47220 * 304.21223 * 8 7 6 37 37 H 1.09001 * 109.46963 * 64.21250 * 8 7 6 38 38 H 1.09005 * 109.45658 * 301.72543 * 9 7 6 39 39 H 1.08998 * 109.46325 * 181.75580 * 9 7 6 40 40 H 1.09000 * 109.49924 * 180.88069 * 10 9 7 41 41 H 1.08994 * 109.53476 * 60.78569 * 10 9 7 42 42 H 1.08998 * 109.47341 * 90.00115 * 12 11 2 43 43 H 1.09003 * 109.46854 * 210.00258 * 12 11 2 44 44 H 1.09000 * 109.46914 * 329.99664 * 12 11 2 45 45 H 1.08996 * 109.47157 * 89.99742 * 17 16 13 46 46 H 1.09000 * 109.46566 * 209.99619 * 17 16 13 47 47 H 1.08996 * 109.46762 * 329.99552 * 17 16 13 48 48 H 1.08999 * 109.46662 * 221.01041 * 18 16 13 49 49 H 1.08993 * 109.46638 * 341.01707 * 18 16 13 50 50 H 0.97000 * 119.99564 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5712 -0.7150 -1.2544 6 6 4.0749 -1.3836 -2.5355 7 7 3.5606 -0.6568 -3.7033 8 6 4.1349 -1.1859 -4.9476 9 6 2.0931 -0.6896 -3.7453 10 6 1.5303 -0.0003 -2.5002 11 7 2.0183 -0.6906 1.1962 12 6 1.6923 -2.1027 1.4111 13 16 2.9388 0.1249 2.3052 14 8 3.8079 -0.8357 2.8892 15 8 3.4034 1.2997 1.6549 16 7 1.9215 0.6289 3.5108 17 6 1.5719 -0.2827 4.6032 18 6 1.3711 1.9864 3.4850 19 6 -0.0462 1.9441 2.9746 20 1 -0.5184 0.9946 2.7700 21 6 -0.7400 3.1176 2.7686 22 7 -0.1651 4.2739 3.0181 23 14 -2.4966 3.0653 2.1353 24 1 -3.3453 2.3098 3.0915 25 1 -3.0157 4.4501 2.0006 26 1 -2.5255 2.3943 0.8108 27 1 -0.3634 0.5985 -0.8355 28 1 -0.3633 0.4243 0.9359 29 1 -0.3633 -1.0228 -0.1006 30 1 1.6790 -1.7496 -1.2490 31 1 3.9310 0.3131 -1.2149 32 1 3.9402 -1.2639 -0.3881 33 1 3.7261 -2.4158 -2.5677 34 1 5.1647 -1.3680 -2.5490 35 1 3.7956 -0.5826 -5.7897 36 1 5.2228 -1.1501 -4.8897 37 1 3.8122 -2.2178 -5.0866 38 1 1.7537 -1.7251 -3.7718 39 1 1.7436 -0.1700 -4.6374 40 1 0.4412 -0.0386 -2.5241 41 1 1.8574 1.0392 -2.4799 42 1 2.4632 -2.7265 0.9587 43 1 1.6424 -2.3052 2.4810 44 1 0.7287 -2.3268 0.9536 45 1 2.2920 -0.1713 5.4138 46 1 0.5731 -0.0448 4.9692 47 1 1.5905 -1.3099 4.2392 48 1 1.3822 2.4020 4.4925 49 1 1.9756 2.6110 2.8274 50 1 -0.6534 5.0994 2.8735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351924326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:45 Heat of formation + Delta-G solvation = -96.727433 kcal Electronic energy + Delta-G solvation = -29868.572939 eV Core-core repulsion = 26056.513313 eV Total energy + Delta-G solvation = -3812.059626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46532 -38.36575 -37.94738 -37.20263 -36.88323 -34.45688 -34.25665 -32.01001 -30.91342 -29.59395 -27.52331 -27.21027 -26.75599 -24.49910 -23.97250 -23.84685 -21.80929 -20.56053 -19.81178 -18.84661 -18.51027 -18.25876 -17.42920 -16.81043 -16.54126 -16.01853 -15.86421 -15.60418 -15.23951 -15.12888 -14.97345 -14.74938 -14.56957 -14.14262 -14.03751 -13.94434 -13.68685 -13.51028 -13.36492 -13.28147 -13.24827 -13.00299 -12.94123 -12.88289 -12.83665 -12.48755 -12.44242 -12.36217 -12.25095 -12.18325 -12.08554 -11.86051 -11.62959 -11.43086 -11.26141 -11.17148 -10.54228 -9.94216 -9.68130 -9.22203 -8.12928 -6.26059 -0.31085 1.45749 1.47275 1.54564 1.99089 2.45072 2.56350 3.03781 3.19223 3.39830 3.63824 3.82104 3.87445 3.96170 4.15532 4.22472 4.36248 4.38880 4.39474 4.53826 4.61274 4.61918 4.63161 4.69921 4.72095 4.75814 4.81430 4.85423 4.88910 4.91760 4.98834 5.02090 5.03531 5.05129 5.08245 5.18172 5.23613 5.28372 5.34439 5.44913 5.56790 5.59627 5.71862 5.82719 5.99800 6.14812 6.16355 6.20583 6.85292 7.43407 8.95651 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.004884 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.043843 B = 5731.971448 C = 7077.538403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.156 3.844 3 H 0.066 0.934 4 C -0.081 4.081 5 C -0.118 4.118 6 C 0.065 3.935 7 N -0.566 5.566 8 C 0.027 3.973 9 C 0.062 3.938 10 C -0.113 4.113 11 N -0.995 5.995 12 C 0.088 3.912 13 S 2.790 3.210 14 O -1.008 7.008 15 O -1.013 7.013 16 N -1.005 6.005 17 C 0.097 3.903 18 C 0.258 3.742 19 C -0.531 4.531 20 H 0.078 0.922 21 C 0.012 3.988 22 N -0.932 5.932 23 Si 0.954 3.046 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.257 1.257 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.012 0.988 49 H 0.019 0.981 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -16.072 -11.786 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.084 0.916 4 C -0.101 4.101 5 C -0.156 4.156 6 C -0.063 4.063 7 N -0.291 5.291 8 C -0.120 4.120 9 C -0.065 4.065 10 C -0.151 4.151 11 N -0.835 5.835 12 C -0.057 4.057 13 S 2.800 3.200 14 O -0.991 6.991 15 O -0.997 6.997 16 N -0.847 5.847 17 C -0.048 4.048 18 C 0.134 3.866 19 C -0.570 4.570 20 H 0.096 0.904 21 C -0.187 4.187 22 N -0.572 5.572 23 Si 0.778 3.222 24 H -0.192 1.192 25 H -0.218 1.218 26 H -0.181 1.181 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.030 0.970 49 H 0.037 0.963 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.232 -15.271 -11.739 19.391 hybrid contribution -1.190 0.006 0.168 1.202 sum 1.043 -15.266 -11.570 19.183 Atomic orbital electron populations 1.22266 0.93990 1.03001 1.03101 1.20869 0.95273 0.95308 0.83538 0.91625 1.21452 0.94760 1.00561 0.93324 1.21640 0.96129 1.00667 0.97172 1.21997 0.99783 0.95086 0.89444 1.61882 1.07840 1.56094 1.03285 1.22366 1.00372 0.98080 0.91223 1.22075 0.86589 0.99426 0.98437 1.21690 1.00996 0.99451 0.92999 1.57671 1.70696 1.20726 1.34440 1.21657 1.02928 0.79013 1.02069 1.01426 0.73841 0.71983 0.72725 1.93511 1.63963 1.63276 1.78394 1.93515 1.80468 1.49952 1.75801 1.57624 1.66196 1.22516 1.38325 1.21490 1.01947 0.91924 0.89469 1.18770 0.93912 0.77317 0.96615 1.21733 0.98206 0.93195 1.43902 0.90397 1.25804 1.02362 0.94921 0.95659 1.70081 1.39136 0.98232 1.49713 0.85673 0.79633 0.77029 0.79820 1.19199 1.21832 1.18117 0.91321 0.92494 0.90158 0.88899 0.93504 0.92468 0.93695 0.90695 0.90685 0.91214 0.94975 0.93812 0.89800 0.89408 0.92840 0.91597 0.91381 0.88660 0.92963 0.90516 0.90309 0.97023 0.96258 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 8.57 71.98 0.62 -4.17 16 2 C 0.16 4.91 2.25 44.99 0.10 5.01 16 3 H 0.07 2.62 6.73 -2.39 -0.02 2.60 16 4 C -0.08 -1.99 1.68 -10.71 -0.02 -2.01 16 5 C -0.12 -3.23 5.18 30.65 0.16 -3.07 16 6 C 0.06 1.41 5.46 86.32 0.47 1.89 16 7 N -0.57 -12.10 4.91 -922.55 -4.53 -16.63 16 8 C 0.03 0.43 9.59 127.69 1.22 1.66 16 9 C 0.06 1.19 5.46 86.33 0.47 1.66 16 10 C -0.11 -2.55 4.95 30.65 0.15 -2.40 16 11 N -0.99 -31.67 2.43 -516.50 -1.26 -32.92 16 12 C 0.09 2.01 9.30 127.77 1.19 3.20 16 13 S 2.79 114.36 5.97 -56.49 -0.34 114.02 16 14 O -1.01 -41.71 16.75 -128.00 -2.14 -43.85 16 15 O -1.01 -49.80 14.92 -128.00 -1.91 -51.71 16 16 N -1.01 -42.49 3.25 -543.22 -1.76 -44.25 16 17 C 0.10 3.26 10.27 127.77 1.31 4.57 16 18 C 0.26 13.29 5.45 85.63 0.47 13.76 16 19 C -0.53 -27.31 8.53 25.60 0.22 -27.09 16 20 H 0.08 3.72 6.42 -2.91 -0.02 3.70 16 21 C 0.01 0.63 5.46 84.65 0.46 1.09 16 22 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 23 Si 0.95 41.13 29.54 68.60 2.03 43.16 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 27 H 0.07 1.87 6.81 -2.38 -0.02 1.86 16 28 H 0.06 2.03 5.84 -2.39 -0.01 2.02 16 29 H 0.08 1.78 6.95 -2.38 -0.02 1.76 16 30 H 0.09 1.88 7.63 -2.39 -0.02 1.86 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.61 7.70 -2.39 -0.02 1.59 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 37 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.09 1.71 6.71 -2.39 -0.02 1.69 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.50 6.53 -2.39 -0.02 1.48 16 44 H 0.09 1.71 6.62 -2.39 -0.02 1.69 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 46 H 0.08 2.53 8.04 -2.39 -0.02 2.51 16 47 H 0.08 2.15 6.51 -2.39 -0.02 2.13 16 48 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.02 1.14 6.76 -2.39 -0.02 1.12 16 50 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.86 389.68 -1.90 -70.76 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.90 Total: 21.43 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.83 Total: -5.90 kcal Atomic # 7 Polarization: -140.66 SS G_CDS: -7.26 Total: -147.92 kcal Atomic # 8 Polarization: -91.50 SS G_CDS: -4.05 Total: -95.56 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 114.36 SS G_CDS: -0.34 Total: 114.02 kcal Total: -68.86 -1.90 -70.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351924326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.964 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds