Wall clock time and date at job start Tue Mar 31 2020 17:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 C 1.52997 * 109.47278 * 120.00247 * 2 1 3 5 5 C 1.53122 * 109.52293 * 304.28824 * 4 2 1 6 6 C 1.53042 * 109.27646 * 182.50404 * 5 4 2 7 7 N 1.46844 * 109.57617 * 59.08352 * 6 5 4 8 8 C 1.46904 * 111.00239 * 174.19312 * 7 6 5 9 9 C 1.46852 * 111.20083 * 298.29189 * 7 6 5 10 10 C 1.53040 * 109.52115 * 61.73858 * 9 7 6 11 11 N 1.46499 * 109.47165 * 240.00485 * 2 1 3 12 12 C 1.46497 * 119.99859 * 293.92883 * 11 2 1 13 13 S 1.65600 * 120.00495 * 113.93099 * 11 2 1 14 14 O 1.42105 * 106.39945 * 341.58388 * 13 11 2 15 15 O 1.42094 * 106.40432 * 208.66836 * 13 11 2 16 16 N 1.65599 * 107.22002 * 95.12330 * 13 11 2 17 17 C 1.46497 * 120.00008 * 264.47436 * 16 13 11 18 18 C 1.46494 * 119.99746 * 84.47191 * 16 13 11 19 19 C 1.50698 * 109.47196 * 95.00011 * 18 16 13 20 20 H 1.07998 * 120.00225 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47682 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47520 * 120.00056 * 23 21 19 26 26 H 1.48505 * 109.47217 * 239.99897 * 23 21 19 27 27 H 1.08998 * 109.46922 * 59.99484 * 1 2 3 28 28 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47098 * 300.00204 * 1 2 3 30 30 H 1.08998 * 109.52478 * 64.41234 * 4 2 1 31 31 H 1.09005 * 109.50599 * 302.38177 * 5 4 2 32 32 H 1.09000 * 109.50147 * 62.49463 * 5 4 2 33 33 H 1.09004 * 109.41048 * 299.06970 * 6 5 4 34 34 H 1.09003 * 109.46226 * 179.13113 * 6 5 4 35 35 H 1.08997 * 109.47313 * 184.21331 * 8 7 6 36 36 H 1.08999 * 109.46878 * 304.21246 * 8 7 6 37 37 H 1.09000 * 109.46651 * 64.20999 * 8 7 6 38 38 H 1.09000 * 109.45686 * 301.72811 * 9 7 6 39 39 H 1.08994 * 109.46318 * 181.75411 * 9 7 6 40 40 H 1.08996 * 109.50080 * 180.87903 * 10 9 7 41 41 H 1.09004 * 109.50316 * 60.76395 * 10 9 7 42 42 H 1.09003 * 109.47254 * 274.95879 * 12 11 2 43 43 H 1.09004 * 109.46998 * 34.95564 * 12 11 2 44 44 H 1.09001 * 109.47348 * 154.95340 * 12 11 2 45 45 H 1.09001 * 109.47490 * 95.05636 * 17 16 13 46 46 H 1.09007 * 109.46983 * 215.05895 * 17 16 13 47 47 H 1.09000 * 109.47225 * 335.05565 * 17 16 13 48 48 H 1.09007 * 109.47354 * 215.00045 * 18 16 13 49 49 H 1.09008 * 109.47484 * 334.99986 * 18 16 13 50 50 H 0.97000 * 120.00078 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.4441 -0.0654 2.4979 6 6 2.0062 -0.7506 3.7456 7 7 3.4696 -0.6291 3.7565 8 6 4.0323 -1.1548 5.0076 9 6 4.0664 -1.2937 2.5909 10 6 3.5669 -0.6237 1.3088 11 7 2.0183 -0.6905 -1.1962 12 6 1.7773 -2.1258 -1.3631 13 16 2.8428 0.1513 -2.3598 14 8 2.5454 1.5247 -2.1479 15 8 2.5956 -0.5166 -3.5893 16 7 4.4583 -0.0313 -2.0449 17 6 5.1743 0.9885 -1.2744 18 6 5.1714 -1.2126 -2.5368 19 6 5.8317 -0.8893 -3.8522 20 1 5.7307 0.0977 -4.2790 21 6 6.5658 -1.8531 -4.5105 22 7 6.6901 -3.0545 -3.9901 23 14 7.3848 -1.4520 -6.1406 24 1 7.0952 -0.0423 -6.5066 25 1 8.8527 -1.6401 -6.0167 26 1 6.8574 -2.3550 -7.1951 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7432 -1.7694 1.2114 31 1 1.7078 0.9921 2.5146 32 1 0.3593 -0.1703 2.4815 33 1 1.7295 -1.8049 3.7357 34 1 1.5957 -0.2759 4.6368 35 1 5.1088 -0.9848 5.0215 36 1 3.5730 -0.6454 5.8547 37 1 3.8323 -2.2242 5.0747 38 1 3.7799 -2.3454 2.5864 39 1 5.1521 -1.2134 2.6434 40 1 3.9979 -1.1272 0.4435 41 1 3.8650 0.4248 1.3063 42 1 2.5572 -2.6875 -0.8488 43 1 0.8059 -2.3827 -0.9405 44 1 1.7894 -2.3754 -2.4241 45 1 5.2033 0.6969 -0.2246 46 1 6.1919 1.0826 -1.6538 47 1 4.6604 1.9448 -1.3718 48 1 5.9305 -1.5069 -1.8118 49 1 4.4654 -2.0314 -2.6762 50 1 7.2068 -3.7325 -4.4530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351924327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:49 Heat of formation + Delta-G solvation = -73.755225 kcal Electronic energy + Delta-G solvation = -29742.654015 eV Core-core repulsion = 25931.590539 eV Total energy + Delta-G solvation = -3811.063476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.59039 -37.01748 -36.61340 -35.45701 -35.12102 -33.28845 -32.41972 -31.11819 -30.01415 -27.74547 -26.65806 -26.15783 -25.02523 -23.50245 -22.98573 -22.22517 -20.85507 -19.60224 -18.34256 -17.35771 -16.75846 -16.34310 -16.06151 -15.76409 -15.20626 -14.86761 -14.76346 -14.38178 -14.18285 -13.95852 -13.74132 -13.47318 -13.23436 -13.10438 -12.66354 -12.51026 -12.28641 -12.25136 -12.23201 -12.10623 -11.96822 -11.64755 -11.60209 -11.43257 -11.23628 -11.22311 -11.12899 -11.07469 -11.05220 -10.67639 -10.55011 -10.50894 -10.34372 -10.22889 -10.00082 -9.69871 -8.77429 -8.46153 -8.43121 -7.99800 -6.05710 -4.08833 1.23573 3.31662 3.39352 3.44734 3.50241 3.80577 4.09978 4.45967 4.56505 4.68822 4.73525 4.97503 5.00558 5.13527 5.18637 5.23934 5.28452 5.29267 5.37666 5.40059 5.40570 5.50146 5.63083 5.67415 5.68566 5.70032 5.74942 5.78436 5.84070 5.85673 5.93960 5.97100 6.06702 6.12004 6.18354 6.25560 6.33608 6.37004 6.51463 6.58990 6.87385 6.93706 6.96598 7.23394 7.42459 7.64024 7.92717 8.22354 8.94031 9.56370 11.02809 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.004148 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.609646 B = 6748.704965 C = 7770.125609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.112 4.112 6 C 0.057 3.943 7 N -0.544 5.544 8 C 0.026 3.974 9 C 0.058 3.942 10 C -0.118 4.118 11 N -1.008 6.008 12 C 0.088 3.912 13 S 2.778 3.222 14 O -0.998 6.998 15 O -0.964 6.964 16 N -0.995 5.995 17 C 0.092 3.908 18 C 0.260 3.740 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.897 5.897 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.282 1.282 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 2.654 17.258 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.115 0.885 4 C -0.115 4.115 5 C -0.151 4.151 6 C -0.071 4.071 7 N -0.269 5.269 8 C -0.123 4.123 9 C -0.069 4.069 10 C -0.156 4.156 11 N -0.846 5.846 12 C -0.058 4.058 13 S 2.787 3.213 14 O -0.982 6.982 15 O -0.947 6.947 16 N -0.837 5.837 17 C -0.054 4.054 18 C 0.138 3.862 19 C -0.565 4.565 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.536 5.536 23 Si 0.723 3.277 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.176 3.446 16.461 19.657 hybrid contribution 0.571 -1.154 -0.497 1.380 sum -9.605 2.291 15.965 18.772 Atomic orbital electron populations 1.22190 0.95416 1.02224 1.02246 1.20834 0.94253 0.96424 0.83911 0.88465 1.21541 0.95939 1.00233 0.93786 1.21712 0.99510 1.00790 0.93064 1.22073 0.87683 0.98609 0.98688 1.61943 1.05198 1.57277 1.02436 1.22336 1.00648 0.97375 0.91912 1.22087 0.99383 0.95415 0.90054 1.21779 0.94743 1.02084 0.96957 1.58157 1.71511 1.18819 1.36073 1.21466 1.01179 0.79939 1.03223 1.02071 0.72999 0.72769 0.73449 1.93501 1.84718 1.33309 1.86648 1.93612 1.84639 1.75858 1.40635 1.57635 1.25859 1.32273 1.67977 1.21422 0.99015 0.90505 0.94469 1.18998 0.92296 0.80583 0.94357 1.21542 1.31152 0.98374 1.05396 0.92165 1.24916 0.96358 0.94839 0.97893 1.69924 1.41226 1.03295 1.39182 0.86477 0.78797 0.78703 0.83687 1.19649 1.21007 1.20843 0.92310 0.92250 0.91400 0.90877 0.90794 0.91082 0.95167 0.91009 0.91346 0.91621 0.95912 0.95015 0.90621 0.90138 0.90876 0.92865 0.91660 0.89815 0.93851 0.90772 0.91554 0.94807 0.94830 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.80 37.16 0.33 -1.38 16 2 C 0.15 1.91 2.19 -67.93 -0.15 1.77 16 3 H 0.10 1.33 6.89 -51.93 -0.36 0.97 16 4 C -0.09 -1.03 1.70 -90.50 -0.15 -1.18 16 5 C -0.11 -1.03 4.83 -26.65 -0.13 -1.15 16 6 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 7 N -0.54 -5.61 4.91 -242.95 -1.19 -6.80 16 8 C 0.03 0.22 9.59 60.07 0.58 0.79 16 9 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 10 C -0.12 -1.43 4.47 -26.65 -0.12 -1.55 16 11 N -1.01 -15.38 2.61 -114.61 -0.30 -15.68 16 12 C 0.09 1.22 9.46 59.85 0.57 1.78 16 13 S 2.78 55.67 6.03 -107.50 -0.65 55.02 16 14 O -1.00 -20.67 15.08 -57.17 -0.86 -21.53 16 15 O -0.96 -23.25 15.98 -57.17 -0.91 -24.16 16 16 N -1.00 -20.39 3.23 -123.05 -0.40 -20.79 16 17 C 0.09 1.60 10.69 59.85 0.64 2.24 16 18 C 0.26 6.36 5.10 -5.20 -0.03 6.33 16 19 C -0.53 -14.68 9.38 -34.44 -0.32 -15.00 16 20 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 23 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 29 H 0.07 0.58 6.42 -51.93 -0.33 0.24 16 30 H 0.07 0.79 7.38 -51.93 -0.38 0.41 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.55 6.51 -51.93 -0.34 0.21 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.08 1.12 7.63 -51.93 -0.40 0.73 16 41 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.72 6.77 -51.93 -0.35 0.37 16 44 H 0.08 1.33 6.99 -51.93 -0.36 0.97 16 45 H 0.04 0.63 6.08 -51.93 -0.32 0.32 16 46 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 47 H 0.07 1.10 6.87 -51.93 -0.36 0.74 16 48 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 49 H 0.03 0.86 7.76 -51.92 -0.40 0.46 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -32.60 391.61 -10.57 -43.16 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -8.94 Total: -2.27 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 1.07 Total: -4.59 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.15 Total: -68.41 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.78 Total: -45.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.65 Total: 55.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.60 -10.57 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351924327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.594 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds