Wall clock time and date at job start Tue Mar 31 2020 17:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 C 1.52997 * 109.47278 * 120.00247 * 2 1 3 5 5 C 1.53122 * 109.52293 * 304.28824 * 4 2 1 6 6 C 1.53042 * 109.27646 * 182.50404 * 5 4 2 7 7 N 1.46844 * 109.57617 * 59.08352 * 6 5 4 8 8 C 1.46904 * 111.00239 * 174.19312 * 7 6 5 9 9 C 1.46852 * 111.20083 * 298.29189 * 7 6 5 10 10 C 1.53040 * 109.52115 * 61.73858 * 9 7 6 11 11 N 1.46499 * 109.47165 * 240.00485 * 2 1 3 12 12 C 1.46497 * 119.99859 * 293.92883 * 11 2 1 13 13 S 1.65600 * 120.00495 * 113.93099 * 11 2 1 14 14 O 1.42105 * 106.39945 * 341.58388 * 13 11 2 15 15 O 1.42094 * 106.40432 * 208.66836 * 13 11 2 16 16 N 1.65599 * 107.22002 * 95.12330 * 13 11 2 17 17 C 1.46497 * 120.00008 * 264.47436 * 16 13 11 18 18 C 1.46494 * 119.99746 * 84.47191 * 16 13 11 19 19 C 1.50698 * 109.47196 * 95.00011 * 18 16 13 20 20 H 1.07998 * 120.00225 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47682 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47520 * 120.00056 * 23 21 19 26 26 H 1.48505 * 109.47217 * 239.99897 * 23 21 19 27 27 H 1.08998 * 109.46922 * 59.99484 * 1 2 3 28 28 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47098 * 300.00204 * 1 2 3 30 30 H 1.08998 * 109.52478 * 64.41234 * 4 2 1 31 31 H 1.09005 * 109.50599 * 302.38177 * 5 4 2 32 32 H 1.09000 * 109.50147 * 62.49463 * 5 4 2 33 33 H 1.09004 * 109.41048 * 299.06970 * 6 5 4 34 34 H 1.09003 * 109.46226 * 179.13113 * 6 5 4 35 35 H 1.08997 * 109.47313 * 184.21331 * 8 7 6 36 36 H 1.08999 * 109.46878 * 304.21246 * 8 7 6 37 37 H 1.09000 * 109.46651 * 64.20999 * 8 7 6 38 38 H 1.09000 * 109.45686 * 301.72811 * 9 7 6 39 39 H 1.08994 * 109.46318 * 181.75411 * 9 7 6 40 40 H 1.08996 * 109.50080 * 180.87903 * 10 9 7 41 41 H 1.09004 * 109.50316 * 60.76395 * 10 9 7 42 42 H 1.09003 * 109.47254 * 274.95879 * 12 11 2 43 43 H 1.09004 * 109.46998 * 34.95564 * 12 11 2 44 44 H 1.09001 * 109.47348 * 154.95340 * 12 11 2 45 45 H 1.09001 * 109.47490 * 95.05636 * 17 16 13 46 46 H 1.09007 * 109.46983 * 215.05895 * 17 16 13 47 47 H 1.09000 * 109.47225 * 335.05565 * 17 16 13 48 48 H 1.09007 * 109.47354 * 215.00045 * 18 16 13 49 49 H 1.09008 * 109.47484 * 334.99986 * 18 16 13 50 50 H 0.97000 * 120.00078 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.4441 -0.0654 2.4979 6 6 2.0062 -0.7506 3.7456 7 7 3.4696 -0.6291 3.7565 8 6 4.0323 -1.1548 5.0076 9 6 4.0664 -1.2937 2.5909 10 6 3.5669 -0.6237 1.3088 11 7 2.0183 -0.6905 -1.1962 12 6 1.7773 -2.1258 -1.3631 13 16 2.8428 0.1513 -2.3598 14 8 2.5454 1.5247 -2.1479 15 8 2.5956 -0.5166 -3.5893 16 7 4.4583 -0.0313 -2.0449 17 6 5.1743 0.9885 -1.2744 18 6 5.1714 -1.2126 -2.5368 19 6 5.8317 -0.8893 -3.8522 20 1 5.7307 0.0977 -4.2790 21 6 6.5658 -1.8531 -4.5105 22 7 6.6901 -3.0545 -3.9901 23 14 7.3848 -1.4520 -6.1406 24 1 7.0952 -0.0423 -6.5066 25 1 8.8527 -1.6401 -6.0167 26 1 6.8574 -2.3550 -7.1951 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7432 -1.7694 1.2114 31 1 1.7078 0.9921 2.5146 32 1 0.3593 -0.1703 2.4815 33 1 1.7295 -1.8049 3.7357 34 1 1.5957 -0.2759 4.6368 35 1 5.1088 -0.9848 5.0215 36 1 3.5730 -0.6454 5.8547 37 1 3.8323 -2.2242 5.0747 38 1 3.7799 -2.3454 2.5864 39 1 5.1521 -1.2134 2.6434 40 1 3.9979 -1.1272 0.4435 41 1 3.8650 0.4248 1.3063 42 1 2.5572 -2.6875 -0.8488 43 1 0.8059 -2.3827 -0.9405 44 1 1.7894 -2.3754 -2.4241 45 1 5.2033 0.6969 -0.2246 46 1 6.1919 1.0826 -1.6538 47 1 4.6604 1.9448 -1.3718 48 1 5.9305 -1.5069 -1.8118 49 1 4.4654 -2.0314 -2.6762 50 1 7.2068 -3.7325 -4.4530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351924327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:48 Heat of formation + Delta-G solvation = -96.766148 kcal Electronic energy + Delta-G solvation = -29743.651844 eV Core-core repulsion = 25931.590539 eV Total energy + Delta-G solvation = -3812.061305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46811 -38.35119 -37.95817 -37.20444 -36.84395 -34.50361 -34.25251 -31.98213 -30.89826 -29.65057 -27.47742 -27.25326 -26.77629 -24.37680 -24.16600 -23.77755 -21.84153 -20.49645 -19.78821 -18.98681 -18.41276 -18.24733 -17.36660 -16.85496 -16.58757 -16.00637 -15.89189 -15.56377 -15.27353 -15.17163 -15.04418 -14.65125 -14.60218 -14.13363 -14.05502 -13.93964 -13.65007 -13.51872 -13.35946 -13.23544 -13.15667 -13.02481 -12.95405 -12.93669 -12.79758 -12.47556 -12.45031 -12.37420 -12.30120 -12.17885 -12.03998 -11.97141 -11.71981 -11.40817 -11.28744 -11.10862 -10.59408 -9.96219 -9.71990 -9.22281 -8.20167 -6.31047 -0.33500 1.37243 1.39899 1.51384 2.02907 2.39685 2.56534 3.06870 3.10716 3.39568 3.62867 3.84319 3.91873 4.05201 4.15263 4.25474 4.32631 4.36311 4.42009 4.53184 4.62815 4.63967 4.67930 4.68346 4.72228 4.76821 4.81132 4.83058 4.88266 4.95987 4.97048 5.02898 5.05220 5.05924 5.09868 5.18979 5.19899 5.27798 5.35330 5.44322 5.47724 5.57491 5.67461 5.74898 5.99174 6.12724 6.16816 6.23121 6.76847 7.37511 8.87177 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.004148 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.609646 B = 6748.704965 C = 7770.125609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.087 4.087 5 C -0.107 4.107 6 C 0.057 3.943 7 N -0.556 5.556 8 C 0.026 3.974 9 C 0.063 3.937 10 C -0.118 4.118 11 N -0.997 5.997 12 C 0.086 3.914 13 S 2.787 3.213 14 O -1.007 7.007 15 O -1.011 7.011 16 N -1.000 6.000 17 C 0.090 3.910 18 C 0.278 3.722 19 C -0.547 4.547 20 H 0.048 0.952 21 C 0.015 3.985 22 N -0.922 5.922 23 Si 0.952 3.048 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.279 1.279 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.027 0.973 49 H 0.017 0.983 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 2.806 19.027 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.107 4.107 5 C -0.146 4.146 6 C -0.071 4.071 7 N -0.281 5.281 8 C -0.122 4.122 9 C -0.065 4.065 10 C -0.156 4.156 11 N -0.838 5.838 12 C -0.060 4.060 13 S 2.797 3.203 14 O -0.991 6.991 15 O -0.994 6.994 16 N -0.842 5.842 17 C -0.056 4.056 18 C 0.155 3.845 19 C -0.587 4.587 20 H 0.066 0.934 21 C -0.184 4.184 22 N -0.562 5.562 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.205 1.205 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.035 0.965 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.233 3.622 18.245 21.730 hybrid contribution 0.857 -1.181 -0.953 1.743 sum -10.376 2.442 17.291 20.313 Atomic orbital electron populations 1.22209 0.93283 1.03426 1.02953 1.21127 0.95896 0.95747 0.83200 0.89620 1.21486 0.94903 1.00543 0.93776 1.21707 1.00712 1.00225 0.91907 1.22136 0.86819 0.98906 0.99220 1.61954 1.06136 1.57393 1.02572 1.22372 1.00707 0.97611 0.91548 1.21975 0.99124 0.95216 0.90199 1.21728 0.95875 1.01338 0.96667 1.57795 1.70501 1.19311 1.36187 1.21583 1.03402 0.78873 1.02098 1.01524 0.72941 0.72496 0.73335 1.93475 1.84758 1.34046 1.86856 1.93547 1.85239 1.76677 1.43969 1.57520 1.26351 1.31802 1.68481 1.21578 0.98359 0.90128 0.95526 1.18536 0.91580 0.81453 0.92975 1.21862 1.31826 0.97999 1.06994 0.93417 1.25669 0.96916 0.94784 1.01059 1.69999 1.41765 1.03944 1.40467 0.85596 0.78548 0.78325 0.79781 1.19712 1.19451 1.20460 0.93622 0.90797 0.88724 0.90255 0.91237 0.88841 0.94949 0.89434 0.91476 0.90233 0.95738 0.95236 0.91247 0.92384 0.91613 0.92457 0.87916 0.92225 0.91179 0.91502 0.90789 0.95521 0.96528 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.80 71.98 0.63 -2.29 16 2 C 0.15 3.42 2.19 44.99 0.10 3.52 16 3 H 0.09 2.24 6.89 -2.39 -0.02 2.23 16 4 C -0.09 -1.70 1.70 -10.71 -0.02 -1.72 16 5 C -0.11 -1.62 4.83 30.65 0.15 -1.47 16 6 C 0.06 0.86 5.46 86.33 0.47 1.33 16 7 N -0.56 -10.33 4.91 -922.56 -4.53 -14.86 16 8 C 0.03 0.38 9.59 127.69 1.22 1.61 16 9 C 0.06 1.34 5.46 86.33 0.47 1.81 16 10 C -0.12 -2.77 4.47 30.65 0.14 -2.63 16 11 N -1.00 -30.03 2.61 -516.52 -1.35 -31.38 16 12 C 0.09 2.33 9.46 127.77 1.21 3.54 16 13 S 2.79 113.88 6.03 -56.49 -0.34 113.54 16 14 O -1.01 -42.00 15.08 -128.00 -1.93 -43.93 16 15 O -1.01 -50.49 15.98 -128.00 -2.05 -52.53 16 16 N -1.00 -41.99 3.23 -543.22 -1.75 -43.75 16 17 C 0.09 3.12 10.69 127.77 1.37 4.49 16 18 C 0.28 14.06 5.10 85.63 0.44 14.49 16 19 C -0.55 -31.36 9.38 25.60 0.24 -31.12 16 20 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 21 C 0.02 0.87 5.46 84.66 0.46 1.33 16 22 N -0.92 -53.79 13.29 21.45 0.28 -53.50 16 23 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.14 6.91 -2.39 -0.02 1.13 16 29 H 0.09 1.24 6.42 -2.38 -0.02 1.22 16 30 H 0.08 1.49 7.38 -2.39 -0.02 1.47 16 31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.02 6.51 -2.39 -0.02 1.00 16 33 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.09 1.07 8.09 -2.39 -0.02 1.06 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 37 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 40 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 41 H 0.07 1.61 7.18 -2.38 -0.02 1.59 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 2.01 6.77 -2.39 -0.02 2.00 16 44 H 0.06 1.94 6.99 -2.39 -0.02 1.92 16 45 H 0.07 2.04 6.08 -2.39 -0.01 2.03 16 46 H 0.07 2.41 8.11 -2.38 -0.02 2.39 16 47 H 0.07 2.45 6.87 -2.39 -0.02 2.44 16 48 H 0.03 1.37 8.11 -2.38 -0.02 1.35 16 49 H 0.02 0.90 7.76 -2.38 -0.02 0.88 16 50 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.91 391.61 -1.86 -72.78 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.90 Total: 13.59 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 6.88 Total: -7.11 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -7.35 Total: -143.49 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -3.98 Total: -96.46 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 113.88 SS G_CDS: -0.34 Total: 113.54 kcal Total: -70.91 -1.86 -72.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351924327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.989 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds