Wall clock time and date at job start Tue Mar 31 2020 17:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46987 * 2 1 4 4 C 1.46852 * 110.99841 * 285.95720 * 3 2 1 5 5 C 1.53041 * 109.52058 * 174.15953 * 4 3 2 6 6 C 1.53117 * 109.30915 * 59.16614 * 5 4 3 7 7 H 1.08995 * 109.52360 * 182.45904 * 6 5 4 8 8 N 1.46503 * 109.52529 * 62.26598 * 6 5 4 9 9 C 1.46496 * 120.00100 * 241.59200 * 8 6 5 10 10 S 1.65600 * 119.99764 * 61.58844 * 8 6 5 11 11 O 1.42099 * 106.39848 * 203.54096 * 10 8 6 12 12 O 1.42100 * 106.40273 * 336.45896 * 10 8 6 13 13 N 1.65595 * 107.21814 * 90.00201 * 10 8 6 14 14 C 1.46500 * 120.00119 * 270.00229 * 13 10 8 15 15 C 1.46502 * 120.00057 * 89.99547 * 13 10 8 16 16 C 1.50701 * 109.46783 * 95.00135 * 15 13 10 17 17 H 1.07999 * 120.00067 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46711 * 90.00889 * 20 18 16 22 22 H 1.48498 * 109.46722 * 210.00591 * 20 18 16 23 23 H 1.48500 * 109.47066 * 330.00589 * 20 18 16 24 24 C 1.53124 * 109.15748 * 302.39947 * 6 5 4 25 25 C 1.46845 * 110.99872 * 161.75488 * 3 2 1 26 26 H 1.08998 * 109.46434 * 65.83089 * 25 3 2 27 27 C 1.53002 * 109.46025 * 305.85145 * 25 3 2 28 28 H 1.09001 * 109.47167 * 59.99959 * 1 2 3 29 29 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46658 * 300.00311 * 1 2 3 31 31 H 1.09000 * 109.46699 * 240.00244 * 2 1 3 32 32 H 1.08993 * 109.47338 * 119.99726 * 2 1 3 33 33 H 1.09003 * 109.46157 * 54.15064 * 4 3 2 34 34 H 1.09001 * 109.46526 * 294.18187 * 4 3 2 35 35 H 1.09000 * 109.49710 * 179.12336 * 5 4 3 36 36 H 1.08993 * 109.50387 * 299.20206 * 5 4 3 37 37 H 1.08995 * 109.47574 * 90.23394 * 9 8 6 38 38 H 1.09000 * 109.47187 * 210.23555 * 9 8 6 39 39 H 1.09008 * 109.47286 * 330.23422 * 9 8 6 40 40 H 1.09000 * 109.47367 * 89.99889 * 14 13 10 41 41 H 1.09001 * 109.47284 * 210.00148 * 14 13 10 42 42 H 1.08998 * 109.46929 * 329.99270 * 14 13 10 43 43 H 1.09004 * 109.47540 * 214.99952 * 15 13 10 44 44 H 1.08995 * 109.47165 * 335.00149 * 15 13 10 45 45 H 0.97005 * 119.99576 * 179.97438 * 19 18 16 46 46 H 1.08992 * 109.47432 * 297.65686 * 24 6 5 47 47 H 1.09001 * 109.53624 * 177.57064 * 24 6 5 48 48 H 1.08996 * 109.47119 * 67.87784 * 27 25 3 49 49 H 1.09003 * 109.46837 * 187.87761 * 27 25 3 50 50 H 1.09003 * 109.47233 * 307.87924 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8397 2.0068 -1.3182 5 6 2.2238 3.4863 -1.2424 6 6 3.6830 3.6083 -0.7949 7 1 3.9473 4.6612 -0.6976 8 7 4.5541 2.9731 -1.7868 9 6 5.3866 1.8296 -1.4053 10 16 4.5978 3.5477 -3.3393 11 8 5.0442 2.4717 -4.1530 12 8 3.3661 4.2238 -3.5517 13 7 5.7822 4.7034 -3.4011 14 6 5.4544 6.1039 -3.1232 15 6 7.1580 4.3252 -3.7336 16 6 7.3901 4.5218 -5.2096 17 1 6.5928 4.8919 -5.8371 18 6 8.6208 4.2303 -5.7588 19 7 9.5918 3.7801 -4.9946 20 14 8.9084 4.4734 -7.5885 21 1 9.4034 5.8519 -7.8328 22 1 9.9170 3.4934 -8.0654 23 1 7.6334 4.2679 -8.3215 24 6 3.8540 2.9100 0.5571 25 6 3.4226 1.4472 0.4292 26 1 4.0504 0.9466 -0.3079 27 6 3.5726 0.7512 1.7835 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 0.7968 1.9175 -1.6225 34 1 2.4749 1.5034 -2.0470 35 1 2.1049 3.9437 -2.2246 36 1 1.5793 3.9933 -0.5244 37 1 4.8335 0.9055 -1.5731 38 1 6.2946 1.8240 -2.0082 39 1 5.6511 1.9084 -0.3508 40 1 5.5725 6.3002 -2.0575 41 1 6.1234 6.7528 -3.6885 42 1 4.4234 6.3009 -3.4169 43 1 7.8525 4.9486 -3.1704 44 1 7.3192 3.2783 -3.4768 45 1 10.4575 3.5746 -5.3810 46 1 3.2356 3.4078 1.3039 47 1 4.8997 2.9557 0.8612 48 1 3.4016 -0.3185 1.6632 49 1 4.5791 0.9173 2.1678 50 1 2.8441 1.1591 2.4843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354580845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:45 Heat of formation + Delta-G solvation = -45.177485 kcal Electronic energy + Delta-G solvation = -29794.992294 eV Core-core repulsion = 25985.168042 eV Total energy + Delta-G solvation = -3809.824252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11673 -36.74980 -36.14198 -35.48145 -35.16564 -32.87462 -32.45397 -32.28158 -29.56637 -27.79242 -27.22649 -26.52144 -25.06473 -23.58400 -22.25528 -22.07987 -20.94502 -20.02724 -18.22597 -17.15357 -16.83566 -16.47886 -16.20358 -15.60308 -15.50264 -14.85612 -14.67717 -14.47794 -14.28258 -14.25576 -13.53537 -13.36300 -13.19454 -13.08705 -12.77516 -12.42760 -12.24461 -12.17277 -12.14095 -12.04316 -11.95263 -11.75987 -11.61012 -11.57645 -11.39227 -11.19389 -11.16204 -11.08724 -10.82997 -10.70034 -10.65994 -10.57795 -10.39352 -10.05460 -9.85097 -9.76302 -8.77708 -8.45294 -8.24569 -8.04954 -6.08056 -4.12028 1.19388 3.30510 3.36823 3.41985 3.44798 3.80354 4.05376 4.43476 4.62524 4.69268 4.80050 4.87670 5.02672 5.10870 5.12390 5.20664 5.26746 5.30179 5.39498 5.43222 5.46445 5.51133 5.60321 5.64070 5.66405 5.68761 5.71602 5.84644 5.86393 5.88842 5.93073 5.97990 6.01262 6.06740 6.08934 6.22760 6.23199 6.35378 6.54324 6.57971 6.83854 7.08702 7.11995 7.20951 7.39199 7.59962 7.89638 8.18881 8.90330 9.53278 11.00500 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003519 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.233385 B = 7955.521241 C = 8089.967657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.532 5.532 4 C 0.060 3.940 5 C -0.163 4.163 6 C 0.157 3.843 7 H 0.073 0.927 8 N -1.010 6.010 9 C 0.089 3.911 10 S 2.780 3.220 11 O -0.963 6.963 12 O -0.991 6.991 13 N -0.997 5.997 14 C 0.096 3.904 15 C 0.258 3.742 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.109 4.109 25 C 0.052 3.948 26 H 0.072 0.928 27 C -0.147 4.147 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 -3.755 14.985 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 N -0.258 5.258 4 C -0.068 4.068 5 C -0.202 4.202 6 C 0.051 3.949 7 H 0.091 0.909 8 N -0.849 5.849 9 C -0.056 4.056 10 S 2.790 3.210 11 O -0.947 6.947 12 O -0.975 6.975 13 N -0.840 5.840 14 C -0.051 4.051 15 C 0.136 3.864 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.148 4.148 25 C -0.056 4.056 26 H 0.089 0.911 27 C -0.205 4.205 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.829 -3.845 14.603 20.476 hybrid contribution 1.069 -0.238 -1.212 1.633 sum -12.760 -4.082 13.391 18.942 Atomic orbital electron populations 1.21754 0.95107 1.01038 1.02375 1.22182 0.96066 0.89439 1.00951 1.62043 1.19066 1.16995 1.27669 1.22022 1.00709 0.95088 0.88985 1.22659 0.95303 0.96449 1.05805 1.20812 0.89536 0.96052 0.88511 0.90859 1.58229 1.53852 1.42807 1.30013 1.21723 0.94263 0.87514 1.02074 1.02080 0.72896 0.73396 0.72671 1.93621 1.82042 1.54304 1.64708 1.93399 1.43353 1.75897 1.84869 1.57672 1.24838 1.17698 1.83750 1.21341 1.01285 0.83086 0.99364 1.19043 0.75281 0.95991 0.96116 1.21495 0.97545 1.44237 0.93584 0.92219 1.24932 0.95841 0.94841 0.98391 1.69916 1.03363 1.44658 1.35561 0.86515 0.78182 0.77863 0.85044 1.20565 1.21006 1.19674 1.21824 1.01555 0.95110 0.96328 1.22283 0.89448 0.96395 0.97456 0.91089 1.21931 1.01862 0.99897 0.96760 0.92782 0.92715 0.92069 0.95034 0.90384 0.90768 0.95121 0.86390 0.90393 0.92904 0.90748 0.90611 0.94390 0.90473 0.91566 0.94791 0.94665 0.92679 0.90072 0.90663 0.92705 0.92150 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.00 37.16 0.37 -0.89 16 2 C 0.04 0.41 5.53 -3.82 -0.02 0.39 16 3 N -0.53 -5.90 4.43 -226.68 -1.00 -6.91 16 4 C 0.06 0.77 5.15 -3.83 -0.02 0.75 16 5 C -0.16 -2.14 5.43 -26.65 -0.14 -2.28 16 6 C 0.16 2.01 3.17 -67.80 -0.21 1.79 16 7 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 8 N -1.01 -15.49 2.69 -114.48 -0.31 -15.79 16 9 C 0.09 1.25 8.21 59.84 0.49 1.74 16 10 S 2.78 55.48 5.94 -107.50 -0.64 54.84 16 11 O -0.96 -23.28 16.19 -57.17 -0.93 -24.21 16 12 O -0.99 -19.76 13.01 -57.17 -0.74 -20.50 16 13 N -1.00 -20.85 3.23 -123.05 -0.40 -21.24 16 14 C 0.10 1.65 10.68 59.85 0.64 2.29 16 15 C 0.26 6.47 5.08 -5.19 -0.03 6.44 16 16 C -0.53 -14.96 9.38 -34.44 -0.32 -15.28 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 C -0.11 -1.13 4.35 -26.64 -0.12 -1.25 16 25 C 0.05 0.54 1.87 -67.72 -0.13 0.41 16 26 H 0.07 0.82 3.72 -51.93 -0.19 0.62 16 27 C -0.15 -1.24 8.57 37.16 0.32 -0.92 16 28 H 0.05 0.50 6.76 -51.93 -0.35 0.15 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.34 8.02 -51.93 -0.42 -0.08 16 32 H 0.08 0.68 5.48 -51.93 -0.28 0.40 16 33 H 0.07 0.89 6.62 -51.93 -0.34 0.55 16 34 H 0.03 0.45 7.69 -51.93 -0.40 0.05 16 35 H 0.12 1.82 4.91 -51.93 -0.26 1.57 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 38 H 0.07 1.19 7.45 -51.93 -0.39 0.80 16 39 H 0.08 0.84 5.27 -51.92 -0.27 0.57 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 43 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 44 H 0.04 0.93 7.26 -51.93 -0.38 0.56 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.72 6.79 -51.93 -0.35 0.37 16 48 H 0.05 0.44 6.42 -51.93 -0.33 0.10 16 49 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -32.35 379.77 -10.28 -42.63 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.43 Total: -0.94 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.73 Total: -5.14 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.97 Total: -69.27 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.67 Total: -44.71 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 55.48 SS G_CDS: -0.64 Total: 54.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.35 -10.28 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.551 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds