Wall clock time and date at job start Tue Mar 31 2020 17:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46987 * 2 1 4 4 C 1.46852 * 110.99841 * 285.95720 * 3 2 1 5 5 C 1.53041 * 109.52058 * 174.15953 * 4 3 2 6 6 C 1.53117 * 109.30915 * 59.16614 * 5 4 3 7 7 H 1.08995 * 109.52360 * 182.45904 * 6 5 4 8 8 N 1.46503 * 109.52529 * 62.26598 * 6 5 4 9 9 C 1.46496 * 120.00100 * 241.59200 * 8 6 5 10 10 S 1.65600 * 119.99764 * 61.58844 * 8 6 5 11 11 O 1.42099 * 106.39848 * 203.54096 * 10 8 6 12 12 O 1.42100 * 106.40273 * 336.45896 * 10 8 6 13 13 N 1.65595 * 107.21814 * 90.00201 * 10 8 6 14 14 C 1.46500 * 120.00119 * 270.00229 * 13 10 8 15 15 C 1.46502 * 120.00057 * 89.99547 * 13 10 8 16 16 C 1.50701 * 109.46783 * 95.00135 * 15 13 10 17 17 H 1.07999 * 120.00067 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46711 * 90.00889 * 20 18 16 22 22 H 1.48498 * 109.46722 * 210.00591 * 20 18 16 23 23 H 1.48500 * 109.47066 * 330.00589 * 20 18 16 24 24 C 1.53124 * 109.15748 * 302.39947 * 6 5 4 25 25 C 1.46845 * 110.99872 * 161.75488 * 3 2 1 26 26 H 1.08998 * 109.46434 * 65.83089 * 25 3 2 27 27 C 1.53002 * 109.46025 * 305.85145 * 25 3 2 28 28 H 1.09001 * 109.47167 * 59.99959 * 1 2 3 29 29 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46658 * 300.00311 * 1 2 3 31 31 H 1.09000 * 109.46699 * 240.00244 * 2 1 3 32 32 H 1.08993 * 109.47338 * 119.99726 * 2 1 3 33 33 H 1.09003 * 109.46157 * 54.15064 * 4 3 2 34 34 H 1.09001 * 109.46526 * 294.18187 * 4 3 2 35 35 H 1.09000 * 109.49710 * 179.12336 * 5 4 3 36 36 H 1.08993 * 109.50387 * 299.20206 * 5 4 3 37 37 H 1.08995 * 109.47574 * 90.23394 * 9 8 6 38 38 H 1.09000 * 109.47187 * 210.23555 * 9 8 6 39 39 H 1.09008 * 109.47286 * 330.23422 * 9 8 6 40 40 H 1.09000 * 109.47367 * 89.99889 * 14 13 10 41 41 H 1.09001 * 109.47284 * 210.00148 * 14 13 10 42 42 H 1.08998 * 109.46929 * 329.99270 * 14 13 10 43 43 H 1.09004 * 109.47540 * 214.99952 * 15 13 10 44 44 H 1.08995 * 109.47165 * 335.00149 * 15 13 10 45 45 H 0.97005 * 119.99576 * 179.97438 * 19 18 16 46 46 H 1.08992 * 109.47432 * 297.65686 * 24 6 5 47 47 H 1.09001 * 109.53624 * 177.57064 * 24 6 5 48 48 H 1.08996 * 109.47119 * 67.87784 * 27 25 3 49 49 H 1.09003 * 109.46837 * 187.87761 * 27 25 3 50 50 H 1.09003 * 109.47233 * 307.87924 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8397 2.0068 -1.3182 5 6 2.2238 3.4863 -1.2424 6 6 3.6830 3.6083 -0.7949 7 1 3.9473 4.6612 -0.6976 8 7 4.5541 2.9731 -1.7868 9 6 5.3866 1.8296 -1.4053 10 16 4.5978 3.5477 -3.3393 11 8 5.0442 2.4717 -4.1530 12 8 3.3661 4.2238 -3.5517 13 7 5.7822 4.7034 -3.4011 14 6 5.4544 6.1039 -3.1232 15 6 7.1580 4.3252 -3.7336 16 6 7.3901 4.5218 -5.2096 17 1 6.5928 4.8919 -5.8371 18 6 8.6208 4.2303 -5.7588 19 7 9.5918 3.7801 -4.9946 20 14 8.9084 4.4734 -7.5885 21 1 9.4034 5.8519 -7.8328 22 1 9.9170 3.4934 -8.0654 23 1 7.6334 4.2679 -8.3215 24 6 3.8540 2.9100 0.5571 25 6 3.4226 1.4472 0.4292 26 1 4.0504 0.9466 -0.3079 27 6 3.5726 0.7512 1.7835 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 0.7968 1.9175 -1.6225 34 1 2.4749 1.5034 -2.0470 35 1 2.1049 3.9437 -2.2246 36 1 1.5793 3.9933 -0.5244 37 1 4.8335 0.9055 -1.5731 38 1 6.2946 1.8240 -2.0082 39 1 5.6511 1.9084 -0.3508 40 1 5.5725 6.3002 -2.0575 41 1 6.1234 6.7528 -3.6885 42 1 4.4234 6.3009 -3.4169 43 1 7.8525 4.9486 -3.1704 44 1 7.3192 3.2783 -3.4768 45 1 10.4575 3.5746 -5.3810 46 1 3.2356 3.4078 1.3039 47 1 4.8997 2.9557 0.8612 48 1 3.4016 -0.3185 1.6632 49 1 4.5791 0.9173 2.1678 50 1 2.8441 1.1591 2.4843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354580845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:44 Heat of formation + Delta-G solvation = -68.015480 kcal Electronic energy + Delta-G solvation = -29795.982624 eV Core-core repulsion = 25985.168042 eV Total energy + Delta-G solvation = -3810.814582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06606 -38.39356 -37.24385 -37.15918 -36.85413 -34.53200 -33.71528 -33.32630 -30.44310 -29.69387 -28.06530 -27.58299 -26.79886 -24.60037 -24.14382 -22.93773 -21.92393 -21.01892 -19.73830 -18.81849 -18.43826 -18.15786 -17.41372 -17.05424 -16.49910 -16.40793 -15.92912 -15.62056 -15.39031 -15.15660 -15.13561 -14.93298 -14.25146 -14.15124 -14.10941 -13.97782 -13.84638 -13.39975 -13.25536 -13.10053 -13.07367 -12.96465 -12.91082 -12.80952 -12.60414 -12.56098 -12.50057 -12.48349 -12.40162 -12.30822 -12.02623 -11.79446 -11.76923 -11.54440 -11.33434 -10.87336 -10.62003 -9.99442 -9.76350 -9.15080 -8.23258 -6.35417 -0.36618 1.36544 1.38911 1.49552 1.99915 2.37121 2.52696 2.95989 3.07246 3.36134 3.64576 3.79431 3.91052 4.03468 4.11559 4.15708 4.25977 4.37015 4.40272 4.50017 4.51410 4.60108 4.63369 4.67978 4.73302 4.77115 4.78819 4.82156 4.84592 4.91626 4.93442 5.03513 5.04392 5.10558 5.13630 5.17671 5.24569 5.25568 5.38455 5.40526 5.46135 5.50606 5.65655 5.71450 5.95632 6.07873 6.18754 6.26958 6.72376 7.33478 8.84182 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.003519 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.233385 B = 7955.521241 C = 8089.967657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.038 3.962 3 N -0.528 5.528 4 C 0.061 3.939 5 C -0.161 4.161 6 C 0.148 3.852 7 H 0.086 0.914 8 N -0.998 5.998 9 C 0.088 3.912 10 S 2.789 3.211 11 O -1.013 7.013 12 O -0.995 6.995 13 N -1.006 6.006 14 C 0.089 3.911 15 C 0.274 3.726 16 C -0.553 4.553 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.103 4.103 25 C 0.045 3.955 26 H 0.059 0.941 27 C -0.140 4.140 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.004 0.996 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.015 0.985 45 H 0.268 0.732 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 -3.437 16.929 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 N -0.253 5.253 4 C -0.068 4.068 5 C -0.200 4.200 6 C 0.043 3.957 7 H 0.104 0.896 8 N -0.840 5.840 9 C -0.057 4.057 10 S 2.799 3.201 11 O -0.997 6.997 12 O -0.979 6.979 13 N -0.847 5.847 14 C -0.056 4.056 15 C 0.150 3.850 16 C -0.592 4.592 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.780 3.220 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.141 4.141 25 C -0.063 4.063 26 H 0.076 0.924 27 C -0.197 4.197 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.022 0.978 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.469 -3.502 16.549 22.260 hybrid contribution 1.170 -0.358 -1.735 2.123 sum -13.299 -3.859 14.814 20.279 Atomic orbital electron populations 1.21722 0.94225 1.01865 1.02022 1.22283 0.96833 0.88776 1.01040 1.62108 1.19567 1.17595 1.26046 1.21964 1.00331 0.94982 0.89481 1.22589 0.96055 0.96509 1.04890 1.21153 0.88652 0.96945 0.88970 0.89642 1.57852 1.54356 1.42905 1.28932 1.21874 0.93064 0.87172 1.03545 1.01596 0.72436 0.72630 0.73408 1.93548 1.82784 1.56108 1.67289 1.93409 1.42984 1.75915 1.85554 1.57603 1.23109 1.19595 1.84404 1.21568 1.01558 0.80959 1.01536 1.18591 0.77333 0.94612 0.94464 1.21827 0.97578 1.44540 0.95246 0.93310 1.25736 0.95650 0.94503 1.02737 1.69998 1.03768 1.45097 1.37282 0.85604 0.77929 0.78700 0.79806 1.18846 1.20129 1.20086 1.21841 1.02814 0.94739 0.94746 1.22382 0.88800 0.96717 0.98378 0.92386 1.21875 1.02755 0.99849 0.95270 0.93745 0.91376 0.91709 0.96365 0.88850 0.90473 0.97800 0.88962 0.88389 0.92467 0.93323 0.87125 0.90908 0.91265 0.90584 0.95423 0.96730 0.92271 0.88322 0.89295 0.92316 0.90919 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.00 71.98 0.72 -1.50 16 2 C 0.04 0.69 5.53 86.30 0.48 1.17 16 3 N -0.53 -10.75 4.43 -871.07 -3.86 -14.62 16 4 C 0.06 1.52 5.15 86.33 0.44 1.97 16 5 C -0.16 -4.03 5.43 30.65 0.17 -3.86 16 6 C 0.15 3.50 3.17 45.07 0.14 3.64 16 7 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 8 N -1.00 -30.27 2.69 -516.10 -1.39 -31.66 16 9 C 0.09 2.44 8.21 127.77 1.05 3.49 16 10 S 2.79 113.74 5.94 -56.49 -0.34 113.41 16 11 O -1.01 -51.26 16.19 -128.00 -2.07 -53.33 16 12 O -0.99 -40.12 13.01 -128.00 -1.67 -41.79 16 13 N -1.01 -42.57 3.23 -543.22 -1.75 -44.32 16 14 C 0.09 3.00 10.68 127.77 1.36 4.37 16 15 C 0.27 14.12 5.08 85.63 0.43 14.56 16 16 C -0.55 -31.97 9.38 25.60 0.24 -31.73 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.77 5.46 84.66 0.46 1.24 16 19 N -0.92 -54.25 13.29 21.45 0.28 -53.97 16 20 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 C -0.10 -1.80 4.35 30.65 0.13 -1.66 16 25 C 0.04 0.83 1.87 44.94 0.08 0.91 16 26 H 0.06 1.24 3.72 -2.39 -0.01 1.23 16 27 C -0.14 -1.90 8.57 71.98 0.62 -1.28 16 28 H 0.04 0.78 6.76 -2.39 -0.02 0.76 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 0.38 8.02 -2.39 -0.02 0.36 16 32 H 0.09 1.41 5.48 -2.39 -0.01 1.40 16 33 H 0.08 1.84 6.62 -2.39 -0.02 1.83 16 34 H 0.00 0.11 7.69 -2.39 -0.02 0.09 16 35 H 0.09 2.83 4.91 -2.39 -0.01 2.82 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.55 6.43 -2.39 -0.02 1.53 16 38 H 0.05 1.61 7.45 -2.39 -0.02 1.59 16 39 H 0.11 2.25 5.27 -2.38 -0.01 2.23 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 42 H 0.08 2.39 7.02 -2.39 -0.02 2.38 16 43 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 44 H 0.01 0.81 7.26 -2.39 -0.02 0.80 16 45 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 46 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.35 6.79 -2.39 -0.02 1.34 16 48 H 0.06 0.76 6.42 -2.39 -0.02 0.74 16 49 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.12 379.77 -1.51 -72.63 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.92 Total: 15.23 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 6.34 Total: -8.70 kcal Atomic # 7 Polarization: -137.85 SS G_CDS: -6.71 Total: -144.57 kcal Atomic # 8 Polarization: -91.38 SS G_CDS: -3.74 Total: -95.12 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 113.74 SS G_CDS: -0.34 Total: 113.41 kcal Total: -71.12 -1.51 -72.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.611 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds