Wall clock time and date at job start Tue Mar 31 2020 17:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47124 * 2 1 4 4 C 1.46848 * 111.00198 * 61.06007 * 3 2 1 5 5 C 1.53173 * 109.55461 * 185.83789 * 4 3 2 6 6 C 1.53115 * 109.20812 * 300.85713 * 5 4 3 7 7 H 1.08999 * 109.52392 * 177.56810 * 6 5 4 8 8 N 1.46501 * 109.52350 * 297.68931 * 6 5 4 9 9 C 1.46497 * 120.00131 * 117.25330 * 8 6 5 10 10 S 1.65604 * 120.00212 * 297.25397 * 8 6 5 11 11 O 1.42100 * 106.40463 * 156.45744 * 10 8 6 12 12 O 1.42106 * 106.39945 * 23.54105 * 10 8 6 13 13 N 1.65595 * 107.21734 * 270.00039 * 10 8 6 14 14 C 1.46497 * 120.00305 * 269.99527 * 13 10 8 15 15 C 1.46506 * 120.00164 * 90.00217 * 13 10 8 16 16 C 1.50698 * 109.47415 * 94.99716 * 15 13 10 17 17 H 1.07999 * 119.99979 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00090 * 180.27816 * 16 15 13 19 19 N 1.31519 * 120.00073 * 359.72343 * 18 16 15 20 20 Si 1.86800 * 120.00250 * 179.72217 * 18 16 15 21 21 H 1.48501 * 109.46872 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46909 * 119.99655 * 20 18 16 23 23 H 1.48498 * 109.47176 * 240.00069 * 20 18 16 24 24 C 1.53115 * 109.21295 * 57.62800 * 6 5 4 25 25 C 1.46856 * 110.99894 * 185.26489 * 3 2 1 26 26 H 1.08993 * 109.46376 * 294.17985 * 25 3 2 27 27 C 1.53005 * 109.45099 * 54.15119 * 25 3 2 28 28 H 1.09003 * 109.47050 * 300.00070 * 1 2 3 29 29 H 1.08992 * 109.46933 * 59.99689 * 1 2 3 30 30 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47050 * 239.99930 * 2 1 3 32 32 H 1.08999 * 109.46814 * 119.99958 * 2 1 3 33 33 H 1.08998 * 109.46050 * 305.85119 * 4 3 2 34 34 H 1.09002 * 109.46154 * 65.82040 * 4 3 2 35 35 H 1.09009 * 109.58573 * 180.90862 * 5 4 3 36 36 H 1.09003 * 109.49137 * 60.75100 * 5 4 3 37 37 H 1.08996 * 109.47277 * 264.43220 * 9 8 6 38 38 H 1.09006 * 109.46961 * 24.43332 * 9 8 6 39 39 H 1.09003 * 109.47505 * 144.42774 * 9 8 6 40 40 H 1.08997 * 109.47067 * 270.00788 * 14 13 10 41 41 H 1.09004 * 109.46948 * 30.00392 * 14 13 10 42 42 H 1.08997 * 109.47266 * 150.00294 * 14 13 10 43 43 H 1.08999 * 109.46531 * 334.99537 * 15 13 10 44 44 H 1.09001 * 109.46876 * 215.00169 * 15 13 10 45 45 H 0.96989 * 120.00205 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.50381 * 62.25746 * 24 6 5 47 47 H 1.09009 * 109.50284 * 182.37246 * 24 6 5 48 48 H 1.08997 * 109.46643 * 183.87197 * 27 25 3 49 49 H 1.09003 * 109.47025 * 303.87141 * 27 25 3 50 50 H 1.09002 * 109.46883 * 63.87190 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5697 2.1023 1.1997 5 6 1.9731 3.5763 1.0972 6 6 3.4950 3.6738 0.9608 7 1 3.7841 4.7183 0.8440 8 7 4.1304 3.1211 2.1595 9 6 4.9936 1.9422 2.0537 10 16 3.8729 3.8290 3.6344 11 8 4.1175 2.8249 4.6096 12 8 2.6413 4.5306 3.5331 13 7 5.0492 4.9764 3.8394 14 6 6.3188 4.6182 4.4765 15 6 4.8202 6.3498 3.3837 16 6 4.3125 7.1823 4.5327 17 1 4.1738 6.7332 5.5050 18 6 4.0191 8.5158 4.3411 19 7 4.1875 9.0626 3.1569 20 14 3.3824 9.5458 5.7634 21 1 3.2827 8.7010 6.9807 22 1 4.3178 10.6708 6.0175 23 1 2.0411 10.0845 5.4230 24 6 3.9427 2.8784 -0.2686 25 6 3.4823 1.4260 -0.1258 26 1 3.9357 0.9869 0.7628 27 6 3.9098 0.6318 -1.3617 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4854 2.0276 1.2821 34 1 2.0321 1.6600 2.0822 35 1 1.6534 4.1060 1.9948 36 1 1.4999 4.0229 0.2226 37 1 4.4138 1.0463 2.2755 38 1 5.3940 1.8747 1.0421 39 1 5.8154 2.0285 2.7646 40 1 6.2401 4.7685 5.5532 41 1 6.5458 3.5720 4.2714 42 1 7.1151 5.2475 4.0790 43 1 4.0818 6.3482 2.5820 44 1 5.7556 6.7711 3.0152 45 1 3.9814 10.0008 3.0222 46 1 3.5006 3.3140 -1.1647 47 1 5.0295 2.9097 -0.3463 48 1 4.9981 0.6042 -1.4172 49 1 3.5236 -0.3851 -1.2917 50 1 3.5124 1.1106 -2.2567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354580846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:48 Heat of formation + Delta-G solvation = -43.162778 kcal Electronic energy + Delta-G solvation = -29918.500418 eV Core-core repulsion = 26108.763530 eV Total energy + Delta-G solvation = -3809.736888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.10415 -36.72209 -36.15961 -35.48263 -35.17203 -32.91340 -32.44207 -32.22451 -29.45610 -27.78809 -27.18721 -26.62465 -25.04500 -23.66729 -22.28326 -21.91201 -20.89619 -19.98618 -18.22791 -17.16853 -16.83404 -16.38466 -16.25168 -15.58946 -15.43246 -14.91660 -14.54406 -14.47236 -14.32966 -14.27126 -13.48547 -13.38533 -13.23459 -13.02657 -12.72922 -12.49219 -12.25313 -12.12448 -12.08532 -12.04422 -11.82480 -11.78057 -11.61268 -11.53011 -11.40772 -11.27764 -11.17782 -11.10617 -10.78476 -10.68735 -10.59206 -10.54646 -10.40257 -10.02756 -9.75193 -9.74441 -8.77269 -8.43724 -8.20602 -8.04702 -6.06506 -4.10177 1.18726 3.31175 3.38806 3.42959 3.46037 3.83147 4.06937 4.45014 4.67987 4.71816 4.85002 4.85213 5.03458 5.11813 5.13565 5.24974 5.27891 5.30670 5.39887 5.41856 5.46270 5.49057 5.56162 5.62621 5.65143 5.69520 5.72527 5.75079 5.86018 5.95256 5.96821 6.02391 6.04428 6.09578 6.13832 6.23704 6.29781 6.38185 6.50394 6.74516 6.84834 7.12811 7.16745 7.21135 7.39419 7.60222 7.91149 8.20512 8.92306 9.55140 11.02076 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003838 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.591630 B = 7293.995438 C = 7623.718707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.058 3.942 5 C -0.162 4.162 6 C 0.156 3.844 7 H 0.082 0.918 8 N -1.010 6.010 9 C 0.091 3.909 10 S 2.780 3.220 11 O -0.997 6.997 12 O -0.956 6.956 13 N -0.998 5.998 14 C 0.109 3.891 15 C 0.258 3.742 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.110 4.110 25 C 0.054 3.946 26 H 0.068 0.932 27 C -0.149 4.149 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.263 0.737 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -17.219 -9.496 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 N -0.258 5.258 4 C -0.069 4.069 5 C -0.201 4.201 6 C 0.050 3.950 7 H 0.100 0.900 8 N -0.850 5.850 9 C -0.055 4.055 10 S 2.790 3.210 11 O -0.981 6.981 12 O -0.940 6.940 13 N -0.841 5.841 14 C -0.038 4.038 15 C 0.136 3.864 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.148 4.148 25 C -0.053 4.053 26 H 0.085 0.915 27 C -0.206 4.206 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.261 -17.029 -9.390 19.448 hybrid contribution 0.353 0.374 1.124 1.236 sum 0.093 -16.656 -8.265 18.594 Atomic orbital electron populations 1.21839 0.95109 1.01285 1.02638 1.22143 0.95893 0.89646 1.00546 1.62013 1.10502 1.13717 1.39553 1.22091 1.00217 0.94516 0.90113 1.22649 0.95011 0.96191 1.06227 1.20874 0.92586 0.97367 0.84146 0.89984 1.58251 1.61153 1.40339 1.25235 1.21689 0.93410 0.87358 1.03019 1.02088 0.74006 0.72398 0.72505 1.93523 1.86524 1.59983 1.58118 1.93516 1.41353 1.73480 1.85653 1.57723 1.29795 1.23576 1.72990 1.21210 0.86140 0.98464 0.97990 1.19071 0.97263 0.74814 0.95237 1.21517 1.43869 0.94563 0.96730 0.92230 1.24918 0.95328 0.97740 0.95964 1.69921 1.48809 1.13030 1.21710 0.86473 0.78643 0.80017 0.82515 1.19665 1.20971 1.20758 1.21830 1.00677 0.94465 0.97874 1.22269 0.88115 0.96155 0.98792 0.91453 1.21951 1.00728 0.99788 0.98133 0.92479 0.91857 0.92609 0.90404 0.95431 0.90469 0.95349 0.86296 0.90161 0.93092 0.90082 0.92088 0.93184 0.93219 0.91468 0.94451 0.94858 0.92752 0.89811 0.90792 0.92378 0.92503 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.72 37.16 0.36 -1.02 16 2 C 0.05 0.45 5.33 -3.83 -0.02 0.43 16 3 N -0.53 -6.16 4.53 -226.60 -1.03 -7.19 16 4 C 0.06 0.79 5.09 -3.76 -0.02 0.77 16 5 C -0.16 -2.45 5.47 -26.58 -0.15 -2.60 16 6 C 0.16 2.26 3.14 -67.81 -0.21 2.05 16 7 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 8 N -1.01 -15.47 2.68 -114.48 -0.31 -15.78 16 9 C 0.09 1.10 8.11 59.85 0.49 1.59 16 10 S 2.78 55.63 5.91 -107.50 -0.64 54.99 16 11 O -1.00 -21.17 16.39 -57.17 -0.94 -22.11 16 12 O -0.96 -22.04 13.46 -57.17 -0.77 -22.81 16 13 N -1.00 -20.90 3.23 -123.05 -0.40 -21.29 16 14 C 0.11 1.90 10.33 59.85 0.62 2.52 16 15 C 0.26 6.42 5.12 -5.19 -0.03 6.39 16 16 C -0.53 -14.83 9.38 -34.44 -0.32 -15.15 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 20 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.11 -1.23 4.36 -26.65 -0.12 -1.34 16 25 C 0.05 0.57 1.78 -67.72 -0.12 0.45 16 26 H 0.07 0.74 3.77 -51.93 -0.20 0.54 16 27 C -0.15 -1.25 8.91 37.16 0.33 -0.92 16 28 H 0.06 0.56 6.30 -51.93 -0.33 0.23 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.68 5.82 -51.93 -0.30 0.38 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 1.00 6.04 -51.93 -0.31 0.68 16 34 H 0.03 0.42 7.69 -51.93 -0.40 0.02 16 35 H 0.12 2.17 5.00 -51.92 -0.26 1.92 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.61 6.86 -51.93 -0.36 0.25 16 38 H 0.08 0.79 4.80 -51.93 -0.25 0.54 16 39 H 0.06 0.71 7.53 -51.93 -0.39 0.32 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.72 7.33 -51.93 -0.38 0.34 16 42 H 0.07 1.08 7.94 -51.93 -0.41 0.66 16 43 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 44 H 0.03 0.84 7.96 -51.93 -0.41 0.43 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.74 6.91 -51.92 -0.36 0.38 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.44 5.99 -51.93 -0.31 0.13 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -32.36 379.49 -10.34 -42.70 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.42 Total: -0.74 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.71 Total: -5.16 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -0.99 Total: -69.44 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.71 Total: -44.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 55.63 SS G_CDS: -0.64 Total: 54.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.36 -10.34 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds