Wall clock time and date at job start Tue Mar 31 2020 17:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47124 * 2 1 4 4 C 1.46848 * 111.00198 * 61.06007 * 3 2 1 5 5 C 1.53173 * 109.55461 * 185.83789 * 4 3 2 6 6 C 1.53115 * 109.20812 * 300.85713 * 5 4 3 7 7 H 1.08999 * 109.52392 * 177.56810 * 6 5 4 8 8 N 1.46501 * 109.52350 * 297.68931 * 6 5 4 9 9 C 1.46497 * 120.00131 * 117.25330 * 8 6 5 10 10 S 1.65604 * 120.00212 * 297.25397 * 8 6 5 11 11 O 1.42100 * 106.40463 * 156.45744 * 10 8 6 12 12 O 1.42106 * 106.39945 * 23.54105 * 10 8 6 13 13 N 1.65595 * 107.21734 * 270.00039 * 10 8 6 14 14 C 1.46497 * 120.00305 * 269.99527 * 13 10 8 15 15 C 1.46506 * 120.00164 * 90.00217 * 13 10 8 16 16 C 1.50698 * 109.47415 * 94.99716 * 15 13 10 17 17 H 1.07999 * 119.99979 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00090 * 180.27816 * 16 15 13 19 19 N 1.31519 * 120.00073 * 359.72343 * 18 16 15 20 20 Si 1.86800 * 120.00250 * 179.72217 * 18 16 15 21 21 H 1.48501 * 109.46872 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46909 * 119.99655 * 20 18 16 23 23 H 1.48498 * 109.47176 * 240.00069 * 20 18 16 24 24 C 1.53115 * 109.21295 * 57.62800 * 6 5 4 25 25 C 1.46856 * 110.99894 * 185.26489 * 3 2 1 26 26 H 1.08993 * 109.46376 * 294.17985 * 25 3 2 27 27 C 1.53005 * 109.45099 * 54.15119 * 25 3 2 28 28 H 1.09003 * 109.47050 * 300.00070 * 1 2 3 29 29 H 1.08992 * 109.46933 * 59.99689 * 1 2 3 30 30 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47050 * 239.99930 * 2 1 3 32 32 H 1.08999 * 109.46814 * 119.99958 * 2 1 3 33 33 H 1.08998 * 109.46050 * 305.85119 * 4 3 2 34 34 H 1.09002 * 109.46154 * 65.82040 * 4 3 2 35 35 H 1.09009 * 109.58573 * 180.90862 * 5 4 3 36 36 H 1.09003 * 109.49137 * 60.75100 * 5 4 3 37 37 H 1.08996 * 109.47277 * 264.43220 * 9 8 6 38 38 H 1.09006 * 109.46961 * 24.43332 * 9 8 6 39 39 H 1.09003 * 109.47505 * 144.42774 * 9 8 6 40 40 H 1.08997 * 109.47067 * 270.00788 * 14 13 10 41 41 H 1.09004 * 109.46948 * 30.00392 * 14 13 10 42 42 H 1.08997 * 109.47266 * 150.00294 * 14 13 10 43 43 H 1.08999 * 109.46531 * 334.99537 * 15 13 10 44 44 H 1.09001 * 109.46876 * 215.00169 * 15 13 10 45 45 H 0.96989 * 120.00205 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.50381 * 62.25746 * 24 6 5 47 47 H 1.09009 * 109.50284 * 182.37246 * 24 6 5 48 48 H 1.08997 * 109.46643 * 183.87197 * 27 25 3 49 49 H 1.09003 * 109.47025 * 303.87141 * 27 25 3 50 50 H 1.09002 * 109.46883 * 63.87190 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5697 2.1023 1.1997 5 6 1.9731 3.5763 1.0972 6 6 3.4950 3.6738 0.9608 7 1 3.7841 4.7183 0.8440 8 7 4.1304 3.1211 2.1595 9 6 4.9936 1.9422 2.0537 10 16 3.8729 3.8290 3.6344 11 8 4.1175 2.8249 4.6096 12 8 2.6413 4.5306 3.5331 13 7 5.0492 4.9764 3.8394 14 6 6.3188 4.6182 4.4765 15 6 4.8202 6.3498 3.3837 16 6 4.3125 7.1823 4.5327 17 1 4.1738 6.7332 5.5050 18 6 4.0191 8.5158 4.3411 19 7 4.1875 9.0626 3.1569 20 14 3.3824 9.5458 5.7634 21 1 3.2827 8.7010 6.9807 22 1 4.3178 10.6708 6.0175 23 1 2.0411 10.0845 5.4230 24 6 3.9427 2.8784 -0.2686 25 6 3.4823 1.4260 -0.1258 26 1 3.9357 0.9869 0.7628 27 6 3.9098 0.6318 -1.3617 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4854 2.0276 1.2821 34 1 2.0321 1.6600 2.0822 35 1 1.6534 4.1060 1.9948 36 1 1.4999 4.0229 0.2226 37 1 4.4138 1.0463 2.2755 38 1 5.3940 1.8747 1.0421 39 1 5.8154 2.0285 2.7646 40 1 6.2401 4.7685 5.5532 41 1 6.5458 3.5720 4.2714 42 1 7.1151 5.2475 4.0790 43 1 4.0818 6.3482 2.5820 44 1 5.7556 6.7711 3.0152 45 1 3.9814 10.0008 3.0222 46 1 3.5006 3.3140 -1.1647 47 1 5.0295 2.9097 -0.3463 48 1 4.9981 0.6042 -1.4172 49 1 3.5236 -0.3851 -1.2917 50 1 3.5124 1.1106 -2.2567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354580846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:47 Heat of formation + Delta-G solvation = -66.183501 kcal Electronic energy + Delta-G solvation = -29919.498672 eV Core-core repulsion = 26108.763530 eV Total energy + Delta-G solvation = -3810.735142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10500 -38.38380 -37.25556 -37.18094 -36.85187 -34.52200 -33.79226 -33.31029 -30.37064 -29.68580 -28.05383 -27.67557 -26.75739 -24.70861 -24.18033 -22.81700 -21.94400 -21.00001 -19.73993 -18.86707 -18.42180 -18.12326 -17.43029 -17.07636 -16.52016 -16.36919 -15.91418 -15.66720 -15.34266 -15.20469 -15.10641 -14.96527 -14.28299 -14.22339 -14.15095 -13.94316 -13.77910 -13.38810 -13.28268 -13.10709 -13.06271 -12.97720 -12.91127 -12.69746 -12.60478 -12.58374 -12.51478 -12.47469 -12.41886 -12.35634 -12.02359 -11.81704 -11.74900 -11.52921 -11.32257 -10.87688 -10.60947 -10.01607 -9.77811 -9.11953 -8.21674 -6.33290 -0.37719 1.36828 1.39426 1.50862 1.99875 2.38280 2.53542 2.95549 3.09067 3.35268 3.63635 3.77964 3.88634 3.98293 4.11935 4.13499 4.27005 4.36027 4.40715 4.48779 4.51379 4.54905 4.60960 4.63513 4.71420 4.76727 4.78416 4.84275 4.85236 4.90914 4.94482 5.00393 5.00813 5.09975 5.15295 5.17097 5.24054 5.24372 5.36575 5.43587 5.45160 5.50829 5.64003 5.71934 5.94743 6.09705 6.18679 6.29356 6.74310 7.35543 8.85918 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003838 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.591630 B = 7293.995438 C = 7623.718707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.534 5.534 4 C 0.065 3.935 5 C -0.163 4.163 6 C 0.152 3.848 7 H 0.063 0.937 8 N -0.999 5.999 9 C 0.080 3.920 10 S 2.788 3.212 11 O -1.012 7.012 12 O -0.995 6.995 13 N -1.006 6.006 14 C 0.099 3.901 15 C 0.275 3.725 16 C -0.550 4.550 17 H 0.047 0.953 18 C 0.015 3.985 19 N -0.921 5.921 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.278 1.278 24 C -0.102 4.102 25 C 0.050 3.950 26 H 0.068 0.932 27 C -0.142 4.142 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.012 0.988 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.018 0.982 44 H 0.027 0.973 45 H 0.268 0.732 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -18.843 -10.661 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 N -0.260 5.260 4 C -0.063 4.063 5 C -0.203 4.203 6 C 0.046 3.954 7 H 0.081 0.919 8 N -0.841 5.841 9 C -0.064 4.064 10 S 2.799 3.201 11 O -0.996 6.996 12 O -0.979 6.979 13 N -0.848 5.848 14 C -0.046 4.046 15 C 0.151 3.849 16 C -0.589 4.589 17 H 0.065 0.935 18 C -0.184 4.184 19 N -0.561 5.561 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.203 1.203 24 C -0.141 4.141 25 C -0.058 4.058 26 H 0.085 0.915 27 C -0.199 4.199 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.036 0.964 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.738 -18.672 -10.537 21.453 hybrid contribution 0.040 0.810 1.443 1.655 sum 0.777 -17.862 -9.094 20.059 Atomic orbital electron populations 1.21826 0.94758 1.02200 1.01898 1.22242 0.96258 0.88592 1.01229 1.62035 1.11429 1.14690 1.37877 1.21937 1.00265 0.93509 0.90562 1.22555 0.95852 0.97180 1.04677 1.20966 0.92058 0.97183 0.85152 0.91908 1.57851 1.61648 1.40791 1.23769 1.22038 0.93185 0.85901 1.05276 1.01638 0.73220 0.72026 0.73245 1.93491 1.86580 1.59996 1.59499 1.93486 1.43431 1.74469 1.86474 1.57661 1.31185 1.22265 1.73658 1.21457 0.85074 1.00734 0.97374 1.18621 0.96045 0.76497 0.93721 1.21824 1.44461 0.95509 0.97124 0.93484 1.25692 0.95441 0.98867 0.98430 1.69998 1.49303 1.13566 1.23200 0.85577 0.78391 0.78712 0.79460 1.19704 1.19329 1.20345 1.21837 1.01930 0.94445 0.95843 1.22378 0.87400 0.95864 1.00119 0.91472 1.21903 1.01853 0.99616 0.96526 0.93756 0.92021 0.90905 0.88545 0.95752 0.90353 0.96968 0.89867 0.89575 0.92521 0.86920 0.91350 0.94021 0.90020 0.90105 0.96387 0.95463 0.92319 0.89221 0.88758 0.90673 0.91686 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.72 71.98 0.70 -1.80 16 2 C 0.04 0.78 5.33 86.31 0.46 1.24 16 3 N -0.53 -11.50 4.53 -870.83 -3.94 -15.44 16 4 C 0.07 1.78 5.09 86.37 0.44 2.22 16 5 C -0.16 -5.12 5.47 30.69 0.17 -4.95 16 6 C 0.15 4.40 3.14 45.07 0.14 4.54 16 7 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 8 N -1.00 -30.16 2.68 -516.11 -1.38 -31.54 16 9 C 0.08 1.76 8.11 127.77 1.04 2.80 16 10 S 2.79 113.86 5.91 -56.49 -0.33 113.53 16 11 O -1.01 -43.04 16.39 -128.00 -2.10 -45.14 16 12 O -0.99 -48.23 13.46 -128.00 -1.72 -49.96 16 13 N -1.01 -42.74 3.23 -543.23 -1.75 -44.49 16 14 C 0.10 3.40 10.33 127.77 1.32 4.72 16 15 C 0.27 14.07 5.12 85.63 0.44 14.51 16 16 C -0.55 -31.70 9.38 25.60 0.24 -31.46 16 17 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 18 C 0.02 0.88 5.46 84.65 0.46 1.35 16 19 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 20 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 21 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C -0.10 -2.06 4.36 30.64 0.13 -1.92 16 25 C 0.05 0.92 1.78 44.94 0.08 1.00 16 26 H 0.07 1.27 3.77 -2.39 -0.01 1.26 16 27 C -0.14 -1.84 8.91 71.98 0.64 -1.19 16 28 H 0.04 0.85 6.30 -2.39 -0.02 0.83 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.37 5.82 -2.39 -0.01 1.35 16 32 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 2.07 6.04 -2.39 -0.01 2.06 16 34 H 0.01 0.36 7.69 -2.39 -0.02 0.35 16 35 H 0.08 3.26 5.00 -2.38 -0.01 3.25 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.06 1.22 6.86 -2.39 -0.02 1.20 16 38 H 0.11 1.78 4.80 -2.38 -0.01 1.77 16 39 H 0.07 1.43 7.53 -2.39 -0.02 1.41 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 2.24 7.33 -2.38 -0.02 2.23 16 42 H 0.08 2.52 7.94 -2.39 -0.02 2.50 16 43 H 0.02 0.99 7.61 -2.39 -0.02 0.97 16 44 H 0.03 1.41 7.96 -2.39 -0.02 1.39 16 45 H 0.27 14.70 8.31 -92.72 -0.77 13.93 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 1.54 6.91 -2.38 -0.02 1.53 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.76 5.99 -2.39 -0.01 0.74 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.16 379.49 -1.74 -72.90 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.92 Total: 15.63 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 6.26 Total: -8.96 kcal Atomic # 7 Polarization: -138.38 SS G_CDS: -6.80 Total: -145.17 kcal Atomic # 8 Polarization: -91.28 SS G_CDS: -3.82 Total: -95.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 113.86 SS G_CDS: -0.33 Total: 113.53 kcal Total: -71.16 -1.74 -72.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.720 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds