Wall clock time and date at job start Tue Mar 31 2020 17:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46846 * 110.99642 * 66.28457 * 3 2 1 5 5 C 1.53035 * 109.52168 * 185.83924 * 4 3 2 6 6 C 1.53126 * 109.27749 * 300.81689 * 5 4 3 7 7 H 1.09000 * 109.52442 * 297.75497 * 6 5 4 8 8 N 1.46502 * 109.52336 * 177.62238 * 6 5 4 9 9 C 1.46497 * 119.99981 * 300.00328 * 8 6 5 10 10 S 1.65603 * 119.99731 * 120.00383 * 8 6 5 11 11 O 1.42104 * 106.39909 * 203.54061 * 10 8 6 12 12 O 1.42105 * 106.40026 * 336.45853 * 10 8 6 13 13 N 1.65590 * 107.21687 * 90.00047 * 10 8 6 14 14 C 1.46507 * 120.00105 * 269.99594 * 13 10 8 15 15 C 1.46498 * 120.00317 * 89.99951 * 13 10 8 16 16 C 1.50707 * 109.47124 * 94.99589 * 15 13 10 17 17 H 1.07992 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99809 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00325 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47401 * 90.00087 * 20 18 16 22 22 H 1.48504 * 109.47074 * 210.00174 * 20 18 16 23 23 H 1.48496 * 109.47421 * 329.99711 * 20 18 16 24 24 C 1.53119 * 109.15720 * 57.65348 * 6 5 4 25 25 C 1.46847 * 110.99671 * 190.48904 * 3 2 1 26 26 H 1.08999 * 109.46704 * 294.17949 * 25 3 2 27 27 C 1.53002 * 109.46006 * 54.15137 * 25 3 2 28 28 H 1.09009 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47063 * 299.99555 * 1 2 3 30 30 H 1.08999 * 109.47721 * 59.99452 * 1 2 3 31 31 H 1.09003 * 109.47063 * 240.00445 * 2 1 3 32 32 H 1.08997 * 109.46863 * 120.00249 * 2 1 3 33 33 H 1.09002 * 109.46412 * 305.85500 * 4 3 2 34 34 H 1.08999 * 109.46378 * 65.81911 * 4 3 2 35 35 H 1.08993 * 109.50654 * 60.76273 * 5 4 3 36 36 H 1.09002 * 109.50527 * 180.88207 * 5 4 3 37 37 H 1.08998 * 109.46895 * 89.99928 * 9 8 6 38 38 H 1.08997 * 109.47272 * 209.99997 * 9 8 6 39 39 H 1.08993 * 109.47401 * 329.99893 * 9 8 6 40 40 H 1.08998 * 109.46744 * 90.00553 * 14 13 10 41 41 H 1.09006 * 109.47205 * 210.00359 * 14 13 10 42 42 H 1.09000 * 109.46727 * 330.00433 * 14 13 10 43 43 H 1.08998 * 109.47550 * 214.99578 * 15 13 10 44 44 H 1.09000 * 109.46888 * 335.00217 * 15 13 10 45 45 H 0.96993 * 120.00170 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.50022 * 62.29201 * 24 6 5 47 47 H 1.08998 * 109.50575 * 182.35988 * 24 6 5 48 48 H 1.08993 * 109.47142 * 52.49677 * 27 25 3 49 49 H 1.09003 * 109.46619 * 172.49217 * 27 25 3 50 50 H 1.08995 * 109.47269 * 292.49065 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6751 2.0649 1.2552 5 6 2.0700 3.5405 1.1626 6 6 3.5748 3.6456 0.8998 7 1 4.1219 3.2081 1.7349 8 7 3.9491 5.0545 0.7537 9 6 3.3477 5.8659 -0.3076 10 16 5.0519 5.7298 1.7882 11 8 4.8040 7.1290 1.7813 12 8 5.0277 4.9419 2.9706 13 7 6.5497 5.5169 1.1150 14 6 7.3259 4.3126 1.4209 15 6 7.0988 6.5328 0.2136 16 6 7.9797 7.4740 0.9944 17 1 8.1171 7.3295 2.0557 18 6 8.6102 8.5194 0.3536 19 7 8.4425 8.6957 -0.9389 20 14 9.7025 9.6855 1.3212 21 1 11.0960 9.1722 1.3223 22 1 9.6708 11.0303 0.6921 23 1 9.2092 9.7811 2.7186 24 6 3.9143 2.8885 -0.3871 25 6 3.4660 1.4318 -0.2496 26 1 3.9935 0.9665 0.5831 27 6 3.7851 0.6761 -1.5411 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6018 1.9863 1.4281 34 1 2.2110 1.5966 2.0808 35 1 1.5240 4.0128 0.3459 36 1 1.8285 4.0414 2.1001 37 1 2.4375 6.3352 0.0656 38 1 4.0526 6.6367 -0.6192 39 1 3.1057 5.2294 -1.1586 40 1 7.0901 3.5343 0.6952 41 1 8.3900 4.5441 1.3725 42 1 7.0752 3.9635 2.4226 43 1 7.6865 6.0477 -0.5658 44 1 6.2827 7.0933 -0.2424 45 1 8.8863 9.4309 -1.3897 46 1 3.3974 3.3506 -1.2283 47 1 4.9903 2.9242 -0.5573 48 1 3.1576 1.0545 -2.3480 49 1 4.8343 0.8223 -1.7977 50 1 3.5908 -0.3868 -1.3977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354580847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:51 Heat of formation + Delta-G solvation = -70.480454 kcal Electronic energy + Delta-G solvation = -29171.970672 eV Core-core repulsion = 25361.049200 eV Total energy + Delta-G solvation = -3810.921472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80139 -36.67339 -36.45246 -35.46581 -35.12443 -33.13530 -32.43237 -32.33110 -29.39919 -27.77582 -27.22078 -26.26409 -25.06347 -23.99637 -22.24023 -22.07900 -21.04973 -19.67879 -18.39400 -17.32794 -16.74490 -16.40638 -16.29199 -15.87656 -15.46216 -14.81049 -14.68354 -14.59254 -14.23316 -13.94501 -13.66124 -13.42536 -13.36659 -13.23465 -12.53938 -12.33036 -12.30247 -12.26451 -12.14223 -12.12328 -12.00737 -11.96182 -11.60445 -11.45823 -11.40435 -11.28144 -11.14243 -11.08176 -11.06496 -10.88657 -10.68990 -10.57419 -10.48785 -10.28669 -10.01790 -9.74814 -8.79057 -8.49719 -8.43536 -8.03424 -6.06268 -4.10107 1.20783 3.31644 3.38046 3.43554 3.47128 3.64295 4.09170 4.45024 4.61357 4.62929 4.67014 4.84412 4.94755 4.96452 5.09069 5.17823 5.20353 5.27439 5.28285 5.32701 5.39615 5.46521 5.47866 5.56789 5.64110 5.65330 5.69779 5.75580 5.78497 5.84965 5.90974 5.93505 5.97332 6.01126 6.06436 6.13467 6.21354 6.27230 6.46785 6.54992 6.81803 6.93849 6.95521 7.23146 7.41411 7.61838 7.91495 8.20923 8.92278 9.55106 11.02305 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003197 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.265224 B = 8757.109966 C = 9068.903431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 N -0.534 5.534 4 C 0.055 3.945 5 C -0.123 4.123 6 C 0.149 3.851 7 H 0.092 0.908 8 N -1.009 6.009 9 C 0.095 3.905 10 S 2.778 3.222 11 O -0.961 6.961 12 O -0.998 6.998 13 N -0.997 5.997 14 C 0.096 3.904 15 C 0.258 3.742 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.122 4.122 25 C 0.083 3.917 26 H 0.042 0.958 27 C -0.147 4.147 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.264 0.736 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -17.896 -1.306 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.260 5.260 4 C -0.073 4.073 5 C -0.162 4.162 6 C 0.043 3.957 7 H 0.110 0.890 8 N -0.846 5.846 9 C -0.050 4.050 10 S 2.787 3.213 11 O -0.944 6.944 12 O -0.982 6.982 13 N -0.839 5.839 14 C -0.050 4.050 15 C 0.136 3.864 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.161 4.161 25 C -0.026 4.026 26 H 0.060 0.940 27 C -0.204 4.204 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.907 -17.057 -1.027 22.031 hybrid contribution 1.164 0.114 0.686 1.356 sum -12.743 -16.943 -0.341 21.203 Atomic orbital electron populations 1.21806 0.95025 1.01306 1.02496 1.22151 0.95962 0.89206 1.00945 1.62031 1.13932 1.15417 1.34589 1.22110 1.01028 0.94216 0.89949 1.21924 0.95832 0.95648 1.02804 1.20851 0.95967 0.80768 0.98148 0.88979 1.58231 1.58976 1.18528 1.48909 1.21398 0.98850 0.94649 0.90119 1.02105 0.72699 0.73216 0.73264 1.93624 1.84661 1.29950 1.86208 1.93501 1.87244 1.72347 1.45098 1.57680 1.32509 1.29505 1.64199 1.21328 0.98402 0.85980 0.99328 1.19041 0.94626 0.84425 0.88275 1.21496 1.28217 1.11611 0.95472 0.92244 1.24926 0.96738 0.97375 0.94961 1.69912 1.43686 1.31432 1.08475 0.86518 0.80494 0.80207 0.80382 1.20614 1.21025 1.19708 1.22042 1.01659 0.93711 0.98734 1.21582 0.87414 0.96067 0.97509 0.94011 1.21909 1.01927 0.99375 0.97208 0.92545 0.92706 0.91861 0.90222 0.95149 0.90190 0.94710 0.90394 0.91074 0.92976 0.90581 0.91258 0.94438 0.90428 0.91762 0.94801 0.94560 0.92689 0.90203 0.90727 0.91572 0.91833 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.85 37.16 0.37 -0.66 16 2 C 0.04 0.36 5.40 -3.82 -0.02 0.33 16 3 N -0.53 -5.06 4.49 -226.69 -1.02 -6.08 16 4 C 0.06 0.54 5.29 -3.84 -0.02 0.52 16 5 C -0.12 -1.39 5.41 -26.65 -0.14 -1.53 16 6 C 0.15 1.96 2.58 -67.80 -0.17 1.78 16 7 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 8 N -1.01 -15.76 3.14 -114.48 -0.36 -16.12 16 9 C 0.10 1.34 9.31 59.85 0.56 1.90 16 10 S 2.78 56.56 6.01 -107.50 -0.65 55.92 16 11 O -0.96 -23.40 16.18 -57.17 -0.93 -24.33 16 12 O -1.00 -21.03 15.31 -57.17 -0.88 -21.90 16 13 N -1.00 -20.90 3.23 -123.04 -0.40 -21.29 16 14 C 0.10 1.67 10.68 59.85 0.64 2.31 16 15 C 0.26 6.47 5.08 -5.19 -0.03 6.44 16 16 C -0.53 -14.93 9.38 -34.44 -0.32 -15.26 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.12 -1.38 4.67 -26.65 -0.12 -1.50 16 25 C 0.08 0.81 2.44 -67.72 -0.17 0.65 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 C -0.15 -1.21 8.53 37.16 0.32 -0.89 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.05 0.38 6.44 -51.93 -0.33 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.58 5.80 -51.93 -0.30 0.28 16 32 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 33 H 0.08 0.69 6.23 -51.93 -0.32 0.37 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.22 7.44 -51.93 -0.39 0.83 16 39 H 0.07 0.80 6.38 -51.93 -0.33 0.47 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 43 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 44 H 0.04 0.96 7.26 -51.93 -0.38 0.58 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.08 0.90 6.57 -51.93 -0.34 0.56 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 50 H 0.05 0.40 6.56 -51.93 -0.34 0.05 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -32.84 392.65 -10.69 -43.54 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.89 Total: -2.98 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.04 Total: -68.86 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.80 Total: -46.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.65 Total: 55.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.84 -10.69 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.942 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds