Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46846 * 110.99642 * 66.28457 * 3 2 1 5 5 C 1.53035 * 109.52168 * 185.83924 * 4 3 2 6 6 C 1.53126 * 109.27749 * 300.81689 * 5 4 3 7 7 H 1.09000 * 109.52442 * 297.75497 * 6 5 4 8 8 N 1.46502 * 109.52336 * 177.62238 * 6 5 4 9 9 C 1.46497 * 119.99981 * 300.00328 * 8 6 5 10 10 S 1.65603 * 119.99731 * 120.00383 * 8 6 5 11 11 O 1.42104 * 106.39909 * 203.54061 * 10 8 6 12 12 O 1.42105 * 106.40026 * 336.45853 * 10 8 6 13 13 N 1.65590 * 107.21687 * 90.00047 * 10 8 6 14 14 C 1.46507 * 120.00105 * 269.99594 * 13 10 8 15 15 C 1.46498 * 120.00317 * 89.99951 * 13 10 8 16 16 C 1.50707 * 109.47124 * 94.99589 * 15 13 10 17 17 H 1.07992 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99809 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00325 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47401 * 90.00087 * 20 18 16 22 22 H 1.48504 * 109.47074 * 210.00174 * 20 18 16 23 23 H 1.48496 * 109.47421 * 329.99711 * 20 18 16 24 24 C 1.53119 * 109.15720 * 57.65348 * 6 5 4 25 25 C 1.46847 * 110.99671 * 190.48904 * 3 2 1 26 26 H 1.08999 * 109.46704 * 294.17949 * 25 3 2 27 27 C 1.53002 * 109.46006 * 54.15137 * 25 3 2 28 28 H 1.09009 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47063 * 299.99555 * 1 2 3 30 30 H 1.08999 * 109.47721 * 59.99452 * 1 2 3 31 31 H 1.09003 * 109.47063 * 240.00445 * 2 1 3 32 32 H 1.08997 * 109.46863 * 120.00249 * 2 1 3 33 33 H 1.09002 * 109.46412 * 305.85500 * 4 3 2 34 34 H 1.08999 * 109.46378 * 65.81911 * 4 3 2 35 35 H 1.08993 * 109.50654 * 60.76273 * 5 4 3 36 36 H 1.09002 * 109.50527 * 180.88207 * 5 4 3 37 37 H 1.08998 * 109.46895 * 89.99928 * 9 8 6 38 38 H 1.08997 * 109.47272 * 209.99997 * 9 8 6 39 39 H 1.08993 * 109.47401 * 329.99893 * 9 8 6 40 40 H 1.08998 * 109.46744 * 90.00553 * 14 13 10 41 41 H 1.09006 * 109.47205 * 210.00359 * 14 13 10 42 42 H 1.09000 * 109.46727 * 330.00433 * 14 13 10 43 43 H 1.08998 * 109.47550 * 214.99578 * 15 13 10 44 44 H 1.09000 * 109.46888 * 335.00217 * 15 13 10 45 45 H 0.96993 * 120.00170 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.50022 * 62.29201 * 24 6 5 47 47 H 1.08998 * 109.50575 * 182.35988 * 24 6 5 48 48 H 1.08993 * 109.47142 * 52.49677 * 27 25 3 49 49 H 1.09003 * 109.46619 * 172.49217 * 27 25 3 50 50 H 1.08995 * 109.47269 * 292.49065 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6751 2.0649 1.2552 5 6 2.0700 3.5405 1.1626 6 6 3.5748 3.6456 0.8998 7 1 4.1219 3.2081 1.7349 8 7 3.9491 5.0545 0.7537 9 6 3.3477 5.8659 -0.3076 10 16 5.0519 5.7298 1.7882 11 8 4.8040 7.1290 1.7813 12 8 5.0277 4.9419 2.9706 13 7 6.5497 5.5169 1.1150 14 6 7.3259 4.3126 1.4209 15 6 7.0988 6.5328 0.2136 16 6 7.9797 7.4740 0.9944 17 1 8.1171 7.3295 2.0557 18 6 8.6102 8.5194 0.3536 19 7 8.4425 8.6957 -0.9389 20 14 9.7025 9.6855 1.3212 21 1 11.0960 9.1722 1.3223 22 1 9.6708 11.0303 0.6921 23 1 9.2092 9.7811 2.7186 24 6 3.9143 2.8885 -0.3871 25 6 3.4660 1.4318 -0.2496 26 1 3.9935 0.9665 0.5831 27 6 3.7851 0.6761 -1.5411 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6018 1.9863 1.4281 34 1 2.2110 1.5966 2.0808 35 1 1.5240 4.0128 0.3459 36 1 1.8285 4.0414 2.1001 37 1 2.4375 6.3352 0.0656 38 1 4.0526 6.6367 -0.6192 39 1 3.1057 5.2294 -1.1586 40 1 7.0901 3.5343 0.6952 41 1 8.3900 4.5441 1.3725 42 1 7.0752 3.9635 2.4226 43 1 7.6865 6.0477 -0.5658 44 1 6.2827 7.0933 -0.2424 45 1 8.8863 9.4309 -1.3897 46 1 3.3974 3.3506 -1.2283 47 1 4.9903 2.9242 -0.5573 48 1 3.1576 1.0545 -2.3480 49 1 4.8343 0.8223 -1.7977 50 1 3.5908 -0.3868 -1.3977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354580847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -93.586032 kcal Electronic energy + Delta-G solvation = -29172.972605 eV Core-core repulsion = 25361.049200 eV Total energy + Delta-G solvation = -3811.923405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65121 -38.36724 -37.51005 -37.22721 -36.86865 -34.51815 -33.90873 -33.22491 -30.19964 -29.67671 -28.00608 -27.37970 -26.80753 -24.89340 -24.16014 -22.82704 -21.92259 -20.56230 -19.87507 -19.00154 -18.43587 -18.23211 -17.50184 -16.98198 -16.61845 -16.30032 -15.76435 -15.58620 -15.37244 -15.11505 -14.94481 -14.73229 -14.65766 -14.28540 -14.07737 -13.97700 -13.62919 -13.34615 -13.27677 -13.18246 -13.06583 -12.94975 -12.93484 -12.92453 -12.73489 -12.61202 -12.53940 -12.49469 -12.36358 -12.13082 -12.00449 -11.91045 -11.77267 -11.74881 -11.29727 -11.27367 -10.60682 -10.00293 -9.77458 -9.22413 -8.21712 -6.33600 -0.38835 1.37414 1.39862 1.50397 1.98467 2.38313 2.53893 2.92537 3.08874 3.34308 3.61668 3.79792 3.89859 4.02110 4.07926 4.14611 4.29277 4.35418 4.40175 4.50349 4.53265 4.57668 4.63733 4.66486 4.68823 4.73255 4.81114 4.82220 4.87630 4.89574 4.94208 5.00994 5.04076 5.10043 5.15011 5.17950 5.22439 5.24720 5.37606 5.41297 5.42597 5.49868 5.62600 5.69955 5.94787 6.09544 6.20151 6.23880 6.74171 7.35173 8.85758 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003197 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.265224 B = 8757.109966 C = 9068.903431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.538 5.538 4 C 0.059 3.941 5 C -0.120 4.120 6 C 0.144 3.856 7 H 0.082 0.918 8 N -0.999 5.999 9 C 0.092 3.908 10 S 2.788 3.212 11 O -1.007 7.007 12 O -1.008 7.008 13 N -1.004 6.004 14 C 0.090 3.910 15 C 0.275 3.725 16 C -0.551 4.551 17 H 0.048 0.952 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.117 4.117 25 C 0.084 3.916 26 H 0.038 0.962 27 C -0.141 4.141 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.017 0.983 45 H 0.268 0.732 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -19.523 -1.691 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.264 5.264 4 C -0.070 4.070 5 C -0.159 4.159 6 C 0.038 3.962 7 H 0.100 0.900 8 N -0.839 5.839 9 C -0.053 4.053 10 S 2.798 3.202 11 O -0.991 6.991 12 O -0.992 6.992 13 N -0.845 5.845 14 C -0.055 4.055 15 C 0.151 3.849 16 C -0.590 4.590 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.156 4.156 25 C -0.025 4.025 26 H 0.056 0.944 27 C -0.199 4.199 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.540 -18.712 -1.400 23.739 hybrid contribution 1.288 0.534 0.801 1.608 sum -13.252 -18.178 -0.599 22.503 Atomic orbital electron populations 1.21778 0.94231 1.02099 1.02156 1.22223 0.96590 0.88197 1.01330 1.62052 1.13616 1.16507 1.34219 1.22080 1.01823 0.92958 0.90108 1.21906 0.94324 0.97006 1.02698 1.21111 0.97145 0.78993 0.98965 0.90018 1.57866 1.57670 1.19847 1.48546 1.21539 0.98419 0.94648 0.90657 1.01526 0.72913 0.72233 0.73493 1.93557 1.85348 1.33139 1.87045 1.93476 1.87479 1.72159 1.46117 1.57581 1.33460 1.29906 1.63571 1.21541 0.97717 0.85424 1.00839 1.18599 0.93370 0.84670 0.88254 1.21821 1.29117 1.12828 0.95283 0.93327 1.25718 0.98031 0.98865 0.95968 1.69994 1.44443 1.32105 1.09617 0.85608 0.79345 0.78442 0.78648 1.18946 1.20180 1.20127 1.22004 1.01513 0.94606 0.97517 1.21569 0.87707 0.94958 0.98261 0.94380 1.21864 1.01990 0.99879 0.96160 0.91253 0.92861 0.92317 0.89430 0.95135 0.88777 0.95107 0.89789 0.91722 0.91719 0.92916 0.88245 0.91057 0.91030 0.91013 0.95380 0.96499 0.92291 0.89922 0.91139 0.91696 0.91677 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.85 71.98 0.71 -0.93 16 2 C 0.04 0.58 5.40 86.30 0.47 1.05 16 3 N -0.54 -8.97 4.49 -871.12 -3.91 -12.88 16 4 C 0.06 1.04 5.29 86.33 0.46 1.49 16 5 C -0.12 -2.54 5.41 30.65 0.17 -2.37 16 6 C 0.14 3.60 2.58 45.07 0.12 3.72 16 7 H 0.08 2.24 6.92 -2.39 -0.02 2.22 16 8 N -1.00 -30.88 3.14 -516.10 -1.62 -32.50 16 9 C 0.09 2.56 9.31 127.77 1.19 3.75 16 10 S 2.79 115.26 6.01 -56.49 -0.34 114.92 16 11 O -1.01 -50.65 16.18 -128.00 -2.07 -52.72 16 12 O -1.01 -42.69 15.31 -128.00 -1.96 -44.65 16 13 N -1.00 -42.60 3.23 -543.20 -1.75 -44.36 16 14 C 0.09 3.08 10.68 127.77 1.36 4.45 16 15 C 0.27 14.09 5.08 85.64 0.43 14.53 16 16 C -0.55 -31.75 9.38 25.60 0.24 -31.51 16 17 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.80 5.46 84.65 0.46 1.26 16 19 N -0.92 -54.18 13.29 21.45 0.28 -53.90 16 20 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 C -0.12 -2.44 4.67 30.65 0.14 -2.30 16 25 C 0.08 1.47 2.44 44.94 0.11 1.58 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 C -0.14 -1.99 8.53 71.98 0.61 -1.38 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.62 6.44 -2.39 -0.02 0.60 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.03 5.80 -2.39 -0.01 1.02 16 32 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 33 H 0.09 1.41 6.23 -2.39 -0.01 1.40 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.68 7.60 -2.39 -0.02 1.67 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.73 7.44 -2.39 -0.02 1.71 16 39 H 0.10 2.13 6.38 -2.39 -0.02 2.12 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.51 8.07 -2.38 -0.02 2.50 16 42 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 43 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 44 H 0.02 0.93 7.26 -2.39 -0.02 0.92 16 45 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 46 H 0.08 1.68 6.57 -2.38 -0.02 1.67 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 50 H 0.07 0.79 6.56 -2.39 -0.02 0.77 16 Total: -1.00 -70.71 392.65 -1.97 -72.68 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.90 Total: 12.96 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 6.47 Total: -6.68 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -7.00 Total: -143.63 kcal Atomic # 8 Polarization: -93.34 SS G_CDS: -4.03 Total: -97.37 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 115.26 SS G_CDS: -0.34 Total: 114.92 kcal Total: -70.71 -1.97 -72.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354580847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.905 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds