Wall clock time and date at job start Tue Mar 31 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99502 * 2 1 4 4 H 1.48497 * 109.46644 * 269.99220 * 3 2 1 5 5 H 1.48492 * 109.47414 * 29.99063 * 3 2 1 6 6 H 1.48497 * 109.46811 * 149.99562 * 3 2 1 7 7 C 1.37873 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47025 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99997 * 180.02562 * 11 10 9 13 13 O 1.21588 * 120.00053 * 354.90042 * 12 11 10 14 14 N 1.34781 * 119.99951 * 174.90633 * 12 11 10 15 15 C 1.47078 * 120.94504 * 184.63357 * 14 12 11 16 16 C 1.53818 * 108.98320 * 116.45863 * 15 14 12 17 17 N 1.46218 * 109.15528 * 45.81899 * 16 15 14 18 18 C 1.35726 * 125.23904 * 341.38621 * 17 16 15 19 19 N 1.29730 * 107.55569 * 180.66594 * 18 17 16 20 20 N 1.28922 * 109.42858 * 359.68916 * 19 18 17 21 21 C 1.30829 * 109.73743 * 0.10728 * 20 19 18 22 22 C 1.50706 * 126.43777 * 180.16470 * 21 20 19 23 23 C 1.54261 * 110.03346 * 57.13959 * 22 21 20 24 24 C 1.54893 * 104.19660 * 217.10482 * 23 22 21 25 25 C 1.54891 * 102.74576 * 37.94583 * 24 23 22 26 26 C 1.53879 * 110.02875 * 299.97305 * 22 21 20 27 27 C 1.47522 * 120.94970 * 4.90855 * 14 12 11 28 28 H 0.96995 * 120.00689 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46949 * 59.99687 * 9 7 2 30 30 H 1.08996 * 109.46879 * 299.99935 * 9 7 2 31 31 H 1.08996 * 109.47173 * 300.00235 * 10 9 7 32 32 H 1.09005 * 109.47222 * 60.00103 * 10 9 7 33 33 H 0.97004 * 120.00266 * 359.97438 * 11 10 9 34 34 H 1.09000 * 109.50775 * 236.38280 * 15 14 12 35 35 H 1.08991 * 109.51249 * 356.52753 * 15 14 12 36 36 H 1.09005 * 109.62953 * 285.86054 * 16 15 14 37 37 H 1.08995 * 109.48539 * 165.69286 * 16 15 14 38 38 H 1.08997 * 110.01518 * 178.59029 * 22 21 20 39 39 H 1.09001 * 110.48952 * 335.78895 * 23 22 21 40 40 H 1.09005 * 110.48446 * 98.42985 * 23 22 21 41 41 H 1.08995 * 110.75524 * 279.63155 * 24 23 22 42 42 H 1.08998 * 110.91412 * 156.33148 * 24 23 22 43 43 H 1.09005 * 110.48330 * 203.37680 * 25 24 23 44 44 H 1.08994 * 110.59984 * 80.79351 * 25 24 23 45 45 H 1.08996 * 110.03245 * 238.56682 * 26 22 21 46 46 H 1.09001 * 110.03590 * 0.02562 * 26 22 21 47 47 H 1.09000 * 109.95426 * 342.49930 * 27 14 12 48 48 H 1.08997 * 109.95497 * 103.68762 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5131 -4.9307 -0.0001 12 6 2.1870 -6.0979 0.0003 13 8 3.3994 -6.0999 -0.0924 14 7 1.5171 -7.2629 0.1034 15 6 2.2357 -8.5419 0.2077 16 6 1.9227 -9.1820 1.5709 17 7 0.4839 -9.1029 1.8190 18 6 -0.3751 -8.2643 1.1857 19 7 -1.5575 -8.4705 1.6779 20 7 -1.4931 -9.3923 2.5769 21 6 -0.2587 -9.8096 2.6941 22 6 0.2392 -10.8798 3.6311 23 6 -0.5205 -12.1985 3.3786 24 6 -0.6958 -12.8120 4.7900 25 6 -0.9720 -11.5685 5.6713 26 6 -0.0479 -10.4792 5.0888 27 6 0.0422 -7.2920 0.1088 28 1 -0.4851 0.8399 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8721 -3.6042 -0.8894 32 1 2.8722 -3.6042 0.8906 33 1 0.5430 -4.9308 0.0000 34 1 1.9121 -9.2075 -0.5925 35 1 3.3079 -8.3649 0.1236 36 1 2.4577 -8.6492 2.3571 37 1 2.2339 -10.2265 1.5621 38 1 1.3093 -11.0314 3.4894 39 1 -1.4917 -11.9986 2.9261 40 1 0.0676 -12.8621 2.7446 41 1 0.2167 -13.3161 5.1082 42 1 -1.5426 -13.4979 4.8136 43 1 -0.7135 -11.7725 6.7104 44 1 -2.0160 -11.2660 5.5912 45 1 0.8827 -10.4374 5.6547 46 1 -0.5477 -9.5110 5.1185 47 1 -0.3487 -6.2993 0.3321 48 1 -0.3268 -7.6274 -0.8604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355080740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:59 Heat of formation + Delta-G solvation = 44.500716 kcal Electronic energy + Delta-G solvation = -28567.588140 eV Core-core repulsion = 24658.501425 eV Total energy + Delta-G solvation = -3909.086714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56288 -40.14294 -38.44598 -37.05958 -35.05289 -34.60119 -32.88050 -31.83594 -30.85954 -29.54743 -29.10035 -28.46820 -26.41722 -25.15626 -23.95393 -22.80007 -21.39789 -21.05064 -20.95624 -19.97451 -19.47008 -17.99757 -17.57365 -16.95129 -16.59406 -16.26097 -15.88172 -15.65958 -15.56093 -14.66436 -14.55459 -14.42916 -14.31011 -13.98810 -13.74324 -13.65728 -13.15636 -12.94563 -12.89122 -12.31752 -12.18475 -11.98542 -11.94702 -11.59382 -11.48943 -11.46221 -11.23052 -11.21457 -11.06447 -10.93957 -10.66677 -10.53365 -10.39932 -10.36323 -10.15676 -9.62777 -9.33033 -9.30855 -9.06825 -8.57021 -8.37980 -6.10793 -4.14086 1.53657 2.00587 2.52882 2.64566 3.22545 3.28530 3.34884 3.38589 3.73658 3.88183 3.92850 4.04143 4.15301 4.21361 4.40824 4.47407 4.54551 4.60585 4.76448 4.89945 5.00858 5.04106 5.08917 5.13554 5.18881 5.26225 5.29446 5.30333 5.35550 5.46681 5.54720 5.66651 5.69946 5.79972 5.85323 5.94149 5.97844 6.01666 6.18421 6.30500 6.55470 6.67918 6.80422 6.83937 7.50084 7.58297 7.87033 8.04518 8.25731 8.53565 8.67258 8.91767 9.50869 11.00733 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002209 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.965338 B =12670.172980 C =13246.360926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.734 5.734 12 C 0.709 3.291 13 O -0.587 6.587 14 N -0.644 5.644 15 C 0.119 3.881 16 C 0.086 3.914 17 N -0.464 5.464 18 C 0.162 3.838 19 N -0.278 5.278 20 N -0.290 5.290 21 C 0.187 3.813 22 C -0.004 4.004 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.113 4.113 27 C 0.202 3.798 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.394 0.606 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.115 0.885 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -27.797 6.186 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.388 5.388 12 C 0.411 3.589 13 O -0.464 6.464 14 N -0.384 5.384 15 C -0.005 4.005 16 C -0.038 4.038 17 N -0.155 5.155 18 C -0.106 4.106 19 N -0.118 5.118 20 N -0.130 5.130 21 C -0.080 4.080 22 C -0.025 4.025 23 C -0.151 4.151 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.152 4.152 27 C 0.076 3.924 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.133 0.867 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.013 -27.448 6.349 28.173 hybrid contribution 1.272 0.892 -0.201 1.566 sum 1.259 -26.556 6.148 27.288 Atomic orbital electron populations 1.69947 1.06074 1.26948 1.50152 1.24999 0.94902 0.99427 0.94967 0.86505 0.79809 0.82996 0.78201 1.20542 1.21161 1.19750 1.21013 0.93225 0.90265 1.51582 0.92214 1.19335 0.94229 0.91009 0.97944 1.21684 0.95753 0.80134 1.00841 1.45752 1.10132 1.05298 1.77650 1.15846 0.85255 0.80011 0.77814 1.90901 1.11669 1.85786 1.58088 1.47413 1.05228 1.05962 1.79782 1.21788 1.00752 0.83879 0.94073 1.22607 0.77072 1.03572 1.00582 1.45898 1.10026 1.29543 1.30010 1.24793 0.87394 0.97807 1.00637 1.74093 1.18074 1.12101 1.07550 1.74454 1.15393 1.09022 1.14101 1.24652 0.88815 0.98723 0.95802 1.20275 0.99657 0.90392 0.92211 1.22435 1.01072 0.93744 0.97870 1.22479 1.01704 0.97417 0.94422 1.22341 1.00268 0.94471 0.98858 1.22173 1.00234 1.00141 0.92615 1.20117 0.80107 0.97697 0.94443 0.92783 0.95830 0.95929 0.92370 0.92690 0.77019 0.90077 0.85901 0.88683 0.87702 0.89510 0.90092 0.91358 0.91398 0.91103 0.91472 0.90930 0.91161 0.90883 0.86718 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.87 5.62 -4.04 -0.02 2.84 16 11 N -0.73 -12.49 5.46 -65.23 -0.36 -12.84 16 12 C 0.71 11.50 8.31 -86.92 -0.72 10.78 16 13 O -0.59 -11.39 15.79 5.29 0.08 -11.31 16 14 N -0.64 -7.71 2.96 -178.83 -0.53 -8.24 16 15 C 0.12 1.04 6.46 -3.30 -0.02 1.02 16 16 C 0.09 0.65 6.72 -3.77 -0.03 0.62 16 17 N -0.46 -4.94 3.11 -110.54 -0.34 -5.29 16 18 C 0.16 2.04 7.88 -155.30 -1.22 0.82 16 19 N -0.28 -4.20 12.21 32.79 0.40 -3.80 16 20 N -0.29 -4.15 12.01 32.71 0.39 -3.76 16 21 C 0.19 2.08 6.28 -155.37 -0.98 1.11 16 22 C 0.00 -0.03 3.34 -90.65 -0.30 -0.34 16 23 C -0.11 -0.77 6.35 -25.07 -0.16 -0.93 16 24 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 25 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 26 C -0.11 -0.87 6.45 -25.61 -0.17 -1.03 16 27 C 0.20 2.19 6.73 -4.50 -0.03 2.16 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 5.93 6.06 -40.82 -0.25 5.68 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.12 1.14 7.01 -51.93 -0.36 0.78 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.45 7.82 -51.93 -0.41 0.04 16 38 H 0.09 0.49 7.39 -51.93 -0.38 0.11 16 39 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 47 H 0.12 1.26 5.88 -51.93 -0.31 0.95 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -34.56 384.62 -10.93 -45.49 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.54 Total: 0.64 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -4.54 Total: 2.29 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.16 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.56 -10.93 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355080740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.990 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds