Wall clock time and date at job start Tue Mar 31 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99502 * 2 1 4 4 H 1.48497 * 109.46644 * 269.99220 * 3 2 1 5 5 H 1.48492 * 109.47414 * 29.99063 * 3 2 1 6 6 H 1.48497 * 109.46811 * 149.99562 * 3 2 1 7 7 C 1.37873 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47025 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99997 * 180.02562 * 11 10 9 13 13 O 1.21588 * 120.00053 * 354.90042 * 12 11 10 14 14 N 1.34781 * 119.99951 * 174.90633 * 12 11 10 15 15 C 1.47078 * 120.94504 * 184.63357 * 14 12 11 16 16 C 1.53818 * 108.98320 * 116.45863 * 15 14 12 17 17 N 1.46218 * 109.15528 * 45.81899 * 16 15 14 18 18 C 1.35726 * 125.23904 * 341.38621 * 17 16 15 19 19 N 1.29730 * 107.55569 * 180.66594 * 18 17 16 20 20 N 1.28922 * 109.42858 * 359.68916 * 19 18 17 21 21 C 1.30829 * 109.73743 * 0.10728 * 20 19 18 22 22 C 1.50706 * 126.43777 * 180.16470 * 21 20 19 23 23 C 1.54261 * 110.03346 * 57.13959 * 22 21 20 24 24 C 1.54893 * 104.19660 * 217.10482 * 23 22 21 25 25 C 1.54891 * 102.74576 * 37.94583 * 24 23 22 26 26 C 1.53879 * 110.02875 * 299.97305 * 22 21 20 27 27 C 1.47522 * 120.94970 * 4.90855 * 14 12 11 28 28 H 0.96995 * 120.00689 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46949 * 59.99687 * 9 7 2 30 30 H 1.08996 * 109.46879 * 299.99935 * 9 7 2 31 31 H 1.08996 * 109.47173 * 300.00235 * 10 9 7 32 32 H 1.09005 * 109.47222 * 60.00103 * 10 9 7 33 33 H 0.97004 * 120.00266 * 359.97438 * 11 10 9 34 34 H 1.09000 * 109.50775 * 236.38280 * 15 14 12 35 35 H 1.08991 * 109.51249 * 356.52753 * 15 14 12 36 36 H 1.09005 * 109.62953 * 285.86054 * 16 15 14 37 37 H 1.08995 * 109.48539 * 165.69286 * 16 15 14 38 38 H 1.08997 * 110.01518 * 178.59029 * 22 21 20 39 39 H 1.09001 * 110.48952 * 335.78895 * 23 22 21 40 40 H 1.09005 * 110.48446 * 98.42985 * 23 22 21 41 41 H 1.08995 * 110.75524 * 279.63155 * 24 23 22 42 42 H 1.08998 * 110.91412 * 156.33148 * 24 23 22 43 43 H 1.09005 * 110.48330 * 203.37680 * 25 24 23 44 44 H 1.08994 * 110.59984 * 80.79351 * 25 24 23 45 45 H 1.08996 * 110.03245 * 238.56682 * 26 22 21 46 46 H 1.09001 * 110.03590 * 0.02562 * 26 22 21 47 47 H 1.09000 * 109.95426 * 342.49930 * 27 14 12 48 48 H 1.08997 * 109.95497 * 103.68762 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5131 -4.9307 -0.0001 12 6 2.1870 -6.0979 0.0003 13 8 3.3994 -6.0999 -0.0924 14 7 1.5171 -7.2629 0.1034 15 6 2.2357 -8.5419 0.2077 16 6 1.9227 -9.1820 1.5709 17 7 0.4839 -9.1029 1.8190 18 6 -0.3751 -8.2643 1.1857 19 7 -1.5575 -8.4705 1.6779 20 7 -1.4931 -9.3923 2.5769 21 6 -0.2587 -9.8096 2.6941 22 6 0.2392 -10.8798 3.6311 23 6 -0.5205 -12.1985 3.3786 24 6 -0.6958 -12.8120 4.7900 25 6 -0.9720 -11.5685 5.6713 26 6 -0.0479 -10.4792 5.0888 27 6 0.0422 -7.2920 0.1088 28 1 -0.4851 0.8399 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8721 -3.6042 -0.8894 32 1 2.8722 -3.6042 0.8906 33 1 0.5430 -4.9308 0.0000 34 1 1.9121 -9.2075 -0.5925 35 1 3.3079 -8.3649 0.1236 36 1 2.4577 -8.6492 2.3571 37 1 2.2339 -10.2265 1.5621 38 1 1.3093 -11.0314 3.4894 39 1 -1.4917 -11.9986 2.9261 40 1 0.0676 -12.8621 2.7446 41 1 0.2167 -13.3161 5.1082 42 1 -1.5426 -13.4979 4.8136 43 1 -0.7135 -11.7725 6.7104 44 1 -2.0160 -11.2660 5.5912 45 1 0.8827 -10.4374 5.6547 46 1 -0.5477 -9.5110 5.1185 47 1 -0.3487 -6.2993 0.3321 48 1 -0.3268 -7.6274 -0.8604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355080740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:58 Heat of formation + Delta-G solvation = 23.489867 kcal Electronic energy + Delta-G solvation = -28568.499238 eV Core-core repulsion = 24658.501425 eV Total energy + Delta-G solvation = -3909.997813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.46135 -41.36379 -39.02403 -38.09573 -36.65172 -35.61383 -34.76725 -32.71683 -31.97619 -30.97947 -29.63719 -29.29478 -27.46245 -26.71104 -25.10775 -23.58494 -22.98146 -22.26611 -21.52923 -20.68806 -20.58646 -19.10393 -18.61746 -18.30521 -17.81229 -17.30950 -16.93623 -16.50910 -16.50411 -16.33533 -15.75544 -15.49295 -15.34384 -15.11461 -14.78299 -14.37847 -14.30233 -14.23496 -13.90068 -13.71009 -13.21753 -12.96999 -12.93939 -12.63866 -12.58130 -12.53036 -12.42013 -12.26107 -12.02590 -11.94026 -11.85249 -11.71477 -11.53705 -11.45350 -11.36574 -11.26030 -11.16136 -10.61531 -10.40971 -10.11496 -9.80047 -8.24000 -6.34598 0.67661 1.11962 1.42013 1.42536 1.53293 1.56622 1.69138 1.95948 2.39189 2.70480 2.96060 3.10953 3.14889 3.30663 3.58057 3.66911 3.82904 3.88537 4.04466 4.06685 4.20778 4.31000 4.37396 4.47531 4.49992 4.51393 4.54641 4.56377 4.60821 4.64378 4.80244 4.84904 4.86181 4.95201 4.98204 5.06847 5.12691 5.23911 5.24863 5.26357 5.35699 5.45379 5.50973 5.57678 5.59711 5.78866 5.83048 6.15480 6.75672 6.79841 7.34703 7.37046 7.60207 8.87842 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002209 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.965338 B =12670.172980 C =13246.360926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.160 3.840 11 N -0.735 5.735 12 C 0.712 3.288 13 O -0.619 6.619 14 N -0.635 5.635 15 C 0.115 3.885 16 C 0.086 3.914 17 N -0.463 5.463 18 C 0.157 3.843 19 N -0.319 5.319 20 N -0.331 5.331 21 C 0.198 3.802 22 C -0.005 4.005 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.113 4.113 27 C 0.204 3.796 28 H 0.265 0.735 29 H 0.009 0.991 30 H 0.004 0.996 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.403 0.597 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.109 0.891 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -29.695 6.367 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.413 3.587 13 O -0.499 6.499 14 N -0.373 5.373 15 C -0.008 4.008 16 C -0.037 4.037 17 N -0.154 5.154 18 C -0.113 4.113 19 N -0.158 5.158 20 N -0.171 5.171 21 C -0.070 4.070 22 C -0.026 4.026 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.152 4.152 27 C 0.079 3.921 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.241 0.759 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.136 0.864 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.127 0.873 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.852 -29.402 6.534 30.176 hybrid contribution 0.655 1.401 -0.225 1.563 sum 2.506 -28.001 6.309 28.812 Atomic orbital electron populations 1.70061 1.07591 1.27987 1.51013 1.25894 0.95788 1.03185 0.94492 0.85435 0.78616 0.78408 0.78536 1.19699 1.20750 1.18927 1.21449 0.93662 0.91729 1.51433 0.92016 1.19139 0.94298 0.91863 0.96255 1.21128 0.94548 0.80666 1.00028 1.45475 1.10491 1.04774 1.78278 1.15834 0.84817 0.80564 0.77437 1.90879 1.13091 1.86433 1.59543 1.47363 1.05791 1.05767 1.78423 1.22090 1.00372 0.82518 0.95804 1.22861 0.75110 1.06123 0.99598 1.46090 1.10988 1.28803 1.29479 1.24942 0.87375 0.98117 1.00821 1.73992 1.19846 1.13276 1.08706 1.74368 1.17625 1.10039 1.15044 1.25262 0.88043 0.98388 0.95306 1.20559 1.01410 0.89507 0.91098 1.22416 0.99929 0.93695 0.98839 1.22475 1.02836 0.96824 0.93185 1.22346 0.98940 0.94814 0.99978 1.22177 1.00959 0.98807 0.93217 1.20248 0.79231 0.97323 0.95313 0.92592 0.97238 0.97721 0.93064 0.93563 0.75944 0.87468 0.86136 0.88818 0.83358 0.86359 0.92767 0.89290 0.89316 0.90806 0.90104 0.92931 0.89243 0.94066 0.87299 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.10 5.09 29.85 0.15 1.25 16 10 C 0.16 6.74 5.62 86.38 0.49 7.23 16 11 N -0.73 -25.09 5.46 -478.54 -2.61 -27.70 16 12 C 0.71 22.60 8.31 179.05 1.49 24.09 16 13 O -0.62 -23.66 15.79 -3.99 -0.06 -23.72 16 14 N -0.63 -14.26 2.96 -837.96 -2.48 -16.74 16 15 C 0.11 1.70 6.46 86.55 0.56 2.25 16 16 C 0.09 1.02 6.72 86.71 0.58 1.60 16 17 N -0.46 -9.06 3.11 -503.63 -1.57 -10.63 16 18 C 0.16 3.86 7.88 138.22 1.09 4.95 16 19 N -0.32 -9.83 12.21 -50.19 -0.61 -10.44 16 20 N -0.33 -9.71 12.01 -50.42 -0.61 -10.32 16 21 C 0.20 4.21 6.28 138.12 0.87 5.08 16 22 C 0.00 -0.06 3.34 -10.81 -0.04 -0.10 16 23 C -0.11 -1.27 6.35 31.67 0.20 -1.07 16 24 C -0.12 -1.03 6.91 31.89 0.22 -0.81 16 25 C -0.12 -1.50 6.83 31.67 0.22 -1.28 16 26 C -0.11 -1.59 6.45 31.32 0.20 -1.39 16 27 C 0.20 4.23 6.73 85.52 0.58 4.80 16 28 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.40 12.27 6.06 -92.71 -0.56 11.71 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.94 7.01 -2.39 -0.02 1.93 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.15 0.52 7.82 -2.39 -0.02 0.50 16 38 H 0.12 0.81 7.39 -2.39 -0.02 0.79 16 39 H 0.05 0.94 7.67 -2.39 -0.02 0.92 16 40 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.04 0.84 7.67 -2.39 -0.02 0.83 16 47 H 0.11 2.39 5.88 -2.39 -0.01 2.37 16 48 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.07 384.62 2.07 -75.00 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.41 Total: 15.90 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.30 Total: 17.42 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -7.60 Total: -130.19 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.06 Total: -23.72 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.07 2.07 -75.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355080740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.487 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds