Wall clock time and date at job start Tue Mar 31 2020 17:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46586 * 2 1 4 4 C 1.53000 * 109.46885 * 119.99889 * 2 1 3 5 5 N 1.46498 * 109.46988 * 65.83294 * 4 2 1 6 6 S 1.65604 * 120.00102 * 165.00070 * 5 4 2 7 7 O 1.42094 * 104.27855 * 181.07346 * 6 5 4 8 8 O 1.42101 * 104.27447 * 308.92915 * 6 5 4 9 9 C 1.81394 * 104.45049 * 64.99625 * 6 5 4 10 10 C 1.52997 * 109.47087 * 180.02562 * 9 6 5 11 11 C 1.53005 * 109.47179 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47173 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00021 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47231 * 90.00243 * 16 14 12 18 18 H 1.48503 * 109.47359 * 210.00011 * 16 14 12 19 19 H 1.48498 * 109.47557 * 330.00208 * 16 14 12 20 20 N 1.46894 * 109.47340 * 240.00143 * 2 1 3 21 21 C 1.46958 * 111.00301 * 182.57018 * 20 2 1 22 22 C 1.53045 * 109.36872 * 176.81175 * 21 20 2 23 23 N 1.46962 * 109.36339 * 58.39504 * 22 21 20 24 24 C 1.46905 * 110.99538 * 176.81321 * 23 22 21 25 25 C 1.46950 * 110.88279 * 300.68133 * 23 22 21 26 26 C 1.46957 * 111.00421 * 58.76419 * 20 2 1 27 27 H 1.09000 * 109.47607 * 300.00360 * 1 2 3 28 28 H 1.09006 * 109.47182 * 60.00075 * 1 2 3 29 29 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47155 * 305.83425 * 4 2 1 31 31 H 1.08993 * 109.46943 * 185.83247 * 4 2 1 32 32 H 0.97004 * 120.00056 * 345.00229 * 5 4 2 33 33 H 1.09000 * 109.47644 * 300.00763 * 9 6 5 34 34 H 1.09012 * 109.46828 * 60.00393 * 9 6 5 35 35 H 1.08998 * 109.47546 * 300.00288 * 10 9 6 36 36 H 1.08998 * 109.47138 * 60.00542 * 10 9 6 37 37 H 1.08998 * 109.46873 * 300.00402 * 11 10 9 38 38 H 1.08998 * 109.46887 * 60.00089 * 11 10 9 39 39 H 0.96993 * 120.00098 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.48476 * 296.77901 * 21 20 2 41 41 H 1.08996 * 109.48807 * 56.83417 * 21 20 2 42 42 H 1.09003 * 109.48541 * 298.43044 * 22 21 20 43 43 H 1.08993 * 109.51072 * 178.37445 * 22 21 20 44 44 H 1.09007 * 109.46857 * 183.80138 * 24 23 22 45 45 H 1.08996 * 109.47281 * 303.80089 * 24 23 22 46 46 H 1.08996 * 109.47309 * 63.80457 * 24 23 22 47 47 H 1.09001 * 109.48920 * 299.35193 * 25 23 22 48 48 H 1.08994 * 109.50591 * 179.30035 * 25 23 22 49 49 H 1.09004 * 109.49071 * 303.16274 * 26 20 2 50 50 H 1.09004 * 109.48447 * 63.21846 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6696 -2.1370 1.1811 6 16 2.3930 -3.2317 2.1914 7 8 1.8154 -4.4783 1.8288 8 8 3.7843 -2.9936 2.0274 9 6 1.8546 -2.7396 3.8522 10 6 2.4648 -3.6865 4.8876 11 6 2.0101 -3.2718 6.2884 12 6 2.6117 -4.2040 7.3083 13 1 3.2537 -5.0117 6.9893 14 6 2.3424 -4.0258 8.6487 15 7 1.5601 -3.0425 9.0372 16 14 3.0886 -5.1808 9.9129 17 1 4.3996 -4.6453 10.3597 18 1 2.1766 -5.2938 11.0795 19 1 3.2829 -6.5216 9.3048 20 7 2.0197 -0.6924 -1.1994 21 6 3.4875 -0.7656 -1.2030 22 6 3.9530 -1.5612 -2.4246 23 7 3.4578 -0.9121 -3.6466 24 6 3.9476 -1.6046 -4.8460 25 6 1.9901 -0.8391 -3.6430 26 6 1.5246 -0.0434 -2.4214 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5938 -0.2713 2.1361 31 1 3.1249 -0.6317 1.3030 32 1 1.0006 -2.4332 0.5442 33 1 2.1838 -1.7203 4.0539 34 1 0.7671 -2.7885 3.9110 35 1 2.1359 -4.7059 4.6862 36 1 3.5521 -3.6372 4.8288 37 1 2.3387 -2.2523 6.4901 38 1 0.9228 -3.3214 6.3470 39 1 1.3710 -2.9168 9.9802 40 1 3.9016 0.2418 -1.2457 41 1 3.8291 -1.2611 -0.2943 42 1 3.5612 -2.5768 -2.3680 43 1 5.0423 -1.5924 -2.4453 44 1 3.6223 -1.0649 -5.7355 45 1 5.0366 -1.6446 -4.8233 46 1 3.5472 -2.6181 -4.8694 47 1 1.5760 -1.8465 -3.6003 48 1 1.6482 -0.3436 -4.5516 49 1 0.4352 -0.0125 -2.4010 50 1 1.9164 0.9722 -2.4779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355678446.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:33 Heat of formation + Delta-G solvation = -71.190867 kcal Electronic energy + Delta-G solvation = -27704.825857 eV Core-core repulsion = 23893.873580 eV Total energy + Delta-G solvation = -3810.952277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.93163 -37.31002 -36.77377 -35.68013 -34.65283 -34.31213 -32.17595 -31.60103 -30.94714 -27.79397 -27.77334 -26.50396 -24.00674 -23.71114 -23.47000 -20.92069 -20.65818 -20.00108 -19.10568 -17.50764 -17.09250 -16.61962 -16.08495 -15.70016 -15.43681 -15.21330 -15.18281 -15.02471 -14.77874 -14.50687 -14.44074 -14.11497 -13.91724 -13.39310 -12.80985 -12.58291 -12.53285 -12.36329 -12.25009 -12.03705 -12.01605 -11.89409 -11.78232 -11.72912 -11.67773 -11.53403 -11.38309 -11.21125 -10.94517 -10.91803 -10.83901 -10.70694 -10.40456 -9.94187 -9.62593 -9.28987 -9.04963 -8.75876 -8.55554 -8.40490 -6.05538 -4.08427 0.53666 2.93513 3.30628 3.36716 3.40956 3.50442 3.61238 4.01306 4.35850 4.42901 4.47245 4.53494 4.65588 4.72314 4.88154 4.97078 5.03380 5.06774 5.12845 5.16604 5.21590 5.22860 5.27904 5.30432 5.31403 5.40750 5.44472 5.47879 5.52239 5.55976 5.62176 5.72699 5.75045 5.87028 5.92270 5.97346 6.28628 6.46629 6.59938 6.62838 6.82410 6.83002 6.88399 7.09910 7.57394 7.67519 7.92678 8.33370 8.97871 9.56205 11.05687 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.002289 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.136371 B =12227.972983 C =12776.281629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 H 0.055 0.945 4 C 0.120 3.880 5 N -1.111 6.111 6 S 2.602 3.398 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.611 4.611 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.531 5.531 21 C 0.050 3.950 22 C 0.056 3.944 23 N -0.546 5.546 24 C 0.025 3.975 25 C 0.056 3.944 26 C 0.054 3.946 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.419 0.581 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.043 0.957 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 9.493 -26.218 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 H 0.073 0.927 4 C -0.008 4.008 5 N -0.871 5.871 6 S 2.697 3.303 7 O -0.955 6.955 8 O -0.955 6.955 9 C -0.742 4.742 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.257 5.257 21 C -0.078 4.078 22 C -0.072 4.072 23 N -0.271 5.271 24 C -0.123 4.123 25 C -0.072 4.072 26 C -0.074 4.074 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.254 0.746 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.630 8.937 -26.243 27.730 hybrid contribution -0.322 -0.168 0.901 0.971 sum -0.952 8.769 -25.342 26.833 Atomic orbital electron populations 1.21920 0.93659 1.02987 1.02103 1.21791 0.96249 0.95659 0.89635 0.92677 1.21382 1.00645 0.81196 0.97529 1.55459 1.59103 1.18861 1.53698 1.05216 0.74622 0.73576 0.76861 1.93572 1.78955 1.40941 1.82050 1.93551 1.31335 1.85326 1.85251 1.30566 1.12086 1.11128 1.20470 1.21487 0.99760 0.96403 0.96862 1.19060 0.96867 0.97002 0.87842 1.21258 1.29739 1.13971 0.91426 0.92377 1.25026 0.95158 0.95565 0.98687 1.69957 1.36774 1.30698 1.16026 0.86550 0.79008 0.81307 0.80910 1.20573 1.21189 1.19747 1.62113 1.09759 1.52452 1.01355 1.22287 0.87073 0.99625 0.98821 1.22176 0.99927 0.96363 0.88723 1.62192 1.09591 1.52787 1.02570 1.22340 1.00826 0.96509 0.92648 1.22159 0.87495 0.99659 0.97868 1.22222 1.00126 0.96045 0.88990 0.91565 0.92300 0.91425 0.91000 0.90266 0.74578 0.85650 0.85359 0.91648 0.91627 0.96160 0.96139 0.92916 0.93983 0.88817 0.93752 0.90182 0.91468 0.91335 0.95527 0.93904 0.90508 0.89827 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.81 37.16 0.33 -0.64 16 2 C 0.08 0.58 2.35 -67.71 -0.16 0.42 16 3 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 4 C 0.12 1.06 5.10 -4.04 -0.02 1.04 16 5 N -1.11 -11.74 5.50 -10.62 -0.06 -11.80 16 6 S 2.60 37.70 5.46 -107.50 -0.59 37.11 16 7 O -0.96 -17.13 18.08 -57.54 -1.04 -18.17 16 8 O -0.96 -16.46 17.50 -57.54 -1.01 -17.46 16 9 C -0.61 -9.26 6.07 37.16 0.23 -9.03 16 10 C -0.11 -2.15 5.16 -26.73 -0.14 -2.28 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 12 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.53 -4.59 4.20 -226.49 -0.95 -5.54 16 21 C 0.05 0.48 5.26 -3.77 -0.02 0.46 16 22 C 0.06 0.54 5.62 -3.77 -0.02 0.51 16 23 N -0.55 -4.76 4.97 -242.76 -1.21 -5.97 16 24 C 0.03 0.18 9.60 60.07 0.58 0.75 16 25 C 0.06 0.44 5.62 -3.77 -0.02 0.42 16 26 C 0.05 0.41 5.29 -3.77 -0.02 0.39 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.34 6.31 -51.93 -0.33 0.01 16 29 H 0.07 0.47 6.95 -51.93 -0.36 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.75 6.19 -51.93 -0.32 0.43 16 32 H 0.42 4.09 7.33 -34.47 -0.25 3.84 16 33 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 1.02 6.21 -51.93 -0.32 0.70 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 46 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.53 6.11 -51.93 -0.32 0.21 16 50 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -34.70 399.95 -11.98 -46.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -9.05 Total: -0.69 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 0.18 Total: -20.95 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -1.48 Total: -49.15 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -2.05 Total: -35.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 37.70 SS G_CDS: -0.59 Total: 37.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.70 -11.98 -46.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355678446.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.515 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds