Wall clock time and date at job start Tue Mar 31 2020 17:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46586 * 2 1 4 4 C 1.53000 * 109.46885 * 119.99889 * 2 1 3 5 5 N 1.46498 * 109.46988 * 65.83294 * 4 2 1 6 6 S 1.65604 * 120.00102 * 165.00070 * 5 4 2 7 7 O 1.42094 * 104.27855 * 181.07346 * 6 5 4 8 8 O 1.42101 * 104.27447 * 308.92915 * 6 5 4 9 9 C 1.81394 * 104.45049 * 64.99625 * 6 5 4 10 10 C 1.52997 * 109.47087 * 180.02562 * 9 6 5 11 11 C 1.53005 * 109.47179 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47173 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00021 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47231 * 90.00243 * 16 14 12 18 18 H 1.48503 * 109.47359 * 210.00011 * 16 14 12 19 19 H 1.48498 * 109.47557 * 330.00208 * 16 14 12 20 20 N 1.46894 * 109.47340 * 240.00143 * 2 1 3 21 21 C 1.46958 * 111.00301 * 182.57018 * 20 2 1 22 22 C 1.53045 * 109.36872 * 176.81175 * 21 20 2 23 23 N 1.46962 * 109.36339 * 58.39504 * 22 21 20 24 24 C 1.46905 * 110.99538 * 176.81321 * 23 22 21 25 25 C 1.46950 * 110.88279 * 300.68133 * 23 22 21 26 26 C 1.46957 * 111.00421 * 58.76419 * 20 2 1 27 27 H 1.09000 * 109.47607 * 300.00360 * 1 2 3 28 28 H 1.09006 * 109.47182 * 60.00075 * 1 2 3 29 29 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47155 * 305.83425 * 4 2 1 31 31 H 1.08993 * 109.46943 * 185.83247 * 4 2 1 32 32 H 0.97004 * 120.00056 * 345.00229 * 5 4 2 33 33 H 1.09000 * 109.47644 * 300.00763 * 9 6 5 34 34 H 1.09012 * 109.46828 * 60.00393 * 9 6 5 35 35 H 1.08998 * 109.47546 * 300.00288 * 10 9 6 36 36 H 1.08998 * 109.47138 * 60.00542 * 10 9 6 37 37 H 1.08998 * 109.46873 * 300.00402 * 11 10 9 38 38 H 1.08998 * 109.46887 * 60.00089 * 11 10 9 39 39 H 0.96993 * 120.00098 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.48476 * 296.77901 * 21 20 2 41 41 H 1.08996 * 109.48807 * 56.83417 * 21 20 2 42 42 H 1.09003 * 109.48541 * 298.43044 * 22 21 20 43 43 H 1.08993 * 109.51072 * 178.37445 * 22 21 20 44 44 H 1.09007 * 109.46857 * 183.80138 * 24 23 22 45 45 H 1.08996 * 109.47281 * 303.80089 * 24 23 22 46 46 H 1.08996 * 109.47309 * 63.80457 * 24 23 22 47 47 H 1.09001 * 109.48920 * 299.35193 * 25 23 22 48 48 H 1.08994 * 109.50591 * 179.30035 * 25 23 22 49 49 H 1.09004 * 109.49071 * 303.16274 * 26 20 2 50 50 H 1.09004 * 109.48447 * 63.21846 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6696 -2.1370 1.1811 6 16 2.3930 -3.2317 2.1914 7 8 1.8154 -4.4783 1.8288 8 8 3.7843 -2.9936 2.0274 9 6 1.8546 -2.7396 3.8522 10 6 2.4648 -3.6865 4.8876 11 6 2.0101 -3.2718 6.2884 12 6 2.6117 -4.2040 7.3083 13 1 3.2537 -5.0117 6.9893 14 6 2.3424 -4.0258 8.6487 15 7 1.5601 -3.0425 9.0372 16 14 3.0886 -5.1808 9.9129 17 1 4.3996 -4.6453 10.3597 18 1 2.1766 -5.2938 11.0795 19 1 3.2829 -6.5216 9.3048 20 7 2.0197 -0.6924 -1.1994 21 6 3.4875 -0.7656 -1.2030 22 6 3.9530 -1.5612 -2.4246 23 7 3.4578 -0.9121 -3.6466 24 6 3.9476 -1.6046 -4.8460 25 6 1.9901 -0.8391 -3.6430 26 6 1.5246 -0.0434 -2.4214 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5938 -0.2713 2.1361 31 1 3.1249 -0.6317 1.3030 32 1 1.0006 -2.4332 0.5442 33 1 2.1838 -1.7203 4.0539 34 1 0.7671 -2.7885 3.9110 35 1 2.1359 -4.7059 4.6862 36 1 3.5521 -3.6372 4.8288 37 1 2.3387 -2.2523 6.4901 38 1 0.9228 -3.3214 6.3470 39 1 1.3710 -2.9168 9.9802 40 1 3.9016 0.2418 -1.2457 41 1 3.8291 -1.2611 -0.2943 42 1 3.5612 -2.5768 -2.3680 43 1 5.0423 -1.5924 -2.4453 44 1 3.6223 -1.0649 -5.7355 45 1 5.0366 -1.6446 -4.8233 46 1 3.5472 -2.6181 -4.8694 47 1 1.5760 -1.8465 -3.6003 48 1 1.6482 -0.3436 -4.5516 49 1 0.4352 -0.0125 -2.4010 50 1 1.9164 0.9722 -2.4779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355678446.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:32 Heat of formation + Delta-G solvation = -98.674773 kcal Electronic energy + Delta-G solvation = -27706.017649 eV Core-core repulsion = 23893.873580 eV Total energy + Delta-G solvation = -3812.144069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58764 -38.20212 -37.87050 -36.98855 -36.45296 -35.09419 -34.15294 -32.26573 -31.61058 -29.63635 -28.37585 -27.19937 -25.60877 -24.63657 -24.13932 -22.41359 -21.57427 -20.74687 -20.18830 -18.71622 -18.49975 -17.82924 -17.23612 -17.00277 -16.49617 -16.21446 -16.04496 -15.91063 -15.81761 -15.50983 -15.47703 -15.08638 -14.65456 -14.47443 -14.12775 -13.97537 -13.51257 -13.45699 -13.16664 -13.13324 -13.09709 -13.02380 -12.92175 -12.88257 -12.75168 -12.61269 -12.59024 -12.31663 -12.20780 -12.13702 -12.09368 -11.74168 -11.58109 -11.40519 -11.33562 -11.07176 -10.57251 -10.24239 -9.42117 -9.21459 -8.22667 -6.33417 -0.67354 1.40183 1.40824 1.52247 1.87626 2.39887 2.81560 2.86748 2.98179 3.10752 3.29474 3.70492 3.79539 3.90048 3.96486 4.04578 4.10353 4.21747 4.36428 4.39726 4.41137 4.44525 4.51356 4.59365 4.61324 4.67305 4.68500 4.75316 4.82104 4.89212 4.92587 4.96075 4.98559 4.99127 5.04639 5.07944 5.09897 5.20558 5.44115 5.45776 5.63790 5.79814 5.96263 5.98195 6.16423 6.18965 6.20235 6.27796 6.82125 7.35712 8.88724 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.002289 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.136371 B =12227.972983 C =12776.281629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.066 0.934 4 C 0.109 3.891 5 N -1.095 6.095 6 S 2.630 3.370 7 O -0.997 6.997 8 O -0.990 6.990 9 C -0.610 4.610 10 C -0.107 4.107 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.266 1.266 20 N -0.540 5.540 21 C 0.053 3.947 22 C 0.057 3.943 23 N -0.553 5.553 24 C 0.025 3.975 25 C 0.055 3.945 26 C 0.057 3.943 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.425 0.575 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.004 0.996 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.032 0.968 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 10.237 -27.024 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.084 0.916 4 C -0.018 4.018 5 N -0.858 5.858 6 S 2.725 3.275 7 O -0.988 6.988 8 O -0.980 6.980 9 C -0.740 4.740 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.190 1.190 20 N -0.266 5.266 21 C -0.075 4.075 22 C -0.072 4.072 23 N -0.278 5.278 24 C -0.123 4.123 25 C -0.073 4.073 26 C -0.071 4.071 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.263 0.737 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.998 9.678 -27.058 28.754 hybrid contribution -0.225 -0.333 1.089 1.160 sum -1.223 9.344 -25.969 27.626 Atomic orbital electron populations 1.21918 0.92500 1.02928 1.03094 1.21824 0.97058 0.95716 0.88475 0.91625 1.21680 1.00700 0.79997 0.99397 1.55052 1.58930 1.19272 1.52565 1.04160 0.73811 0.73067 0.76487 1.93524 1.79390 1.43333 1.82529 1.93520 1.33205 1.85696 1.85567 1.30515 1.12999 1.11015 1.19514 1.21304 1.00108 0.97565 0.95619 1.18958 0.95543 0.95729 0.90450 1.21742 1.30029 1.14604 0.92672 0.92281 1.25935 0.95555 0.97211 1.00915 1.70066 1.37893 1.32253 1.16671 0.85479 0.78369 0.79270 0.78150 1.19676 1.20525 1.19007 1.62128 1.09001 1.53172 1.02274 1.22183 0.87971 0.99332 0.98059 1.22135 1.00030 0.95536 0.89455 1.62235 1.10261 1.52753 1.02581 1.22385 1.01036 0.96376 0.92518 1.22224 0.86885 0.99326 0.98824 1.22255 1.00928 0.95658 0.88254 0.90678 0.91284 0.91962 0.88759 0.90935 0.73709 0.83528 0.83624 0.91884 0.91610 0.97728 0.97891 0.92633 0.93941 0.90398 0.95435 0.90053 0.90142 0.91054 0.95927 0.94961 0.88945 0.88325 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.81 71.98 0.63 -0.88 16 2 C 0.08 1.04 2.35 44.92 0.11 1.14 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C 0.11 1.73 5.10 86.38 0.44 2.17 16 5 N -1.10 -21.64 5.50 -187.50 -1.03 -22.67 16 6 S 2.63 74.39 5.46 -56.49 -0.31 74.08 16 7 O -1.00 -35.08 18.08 -127.65 -2.31 -37.39 16 8 O -0.99 -33.49 17.50 -127.65 -2.23 -35.72 16 9 C -0.61 -17.85 6.07 71.98 0.44 -17.41 16 10 C -0.11 -4.34 5.16 30.60 0.16 -4.18 16 11 C 0.03 1.62 4.97 29.85 0.15 1.77 16 12 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 16 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 N -0.54 -8.57 4.20 -870.49 -3.66 -12.22 16 21 C 0.05 0.99 5.26 86.31 0.45 1.44 16 22 C 0.06 1.08 5.62 86.31 0.49 1.56 16 23 N -0.55 -9.11 4.97 -921.97 -4.58 -13.69 16 24 C 0.02 0.33 9.60 127.69 1.23 1.55 16 25 C 0.06 0.78 5.62 86.31 0.49 1.27 16 26 C 0.06 0.74 5.29 86.31 0.46 1.20 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.58 6.31 -2.38 -0.02 0.57 16 29 H 0.06 0.72 6.95 -2.39 -0.02 0.71 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.29 6.19 -2.39 -0.01 1.28 16 32 H 0.43 7.68 7.33 -96.74 -0.71 6.97 16 33 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.15 3.76 8.14 -2.38 -0.02 3.74 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 1.70 6.21 -2.39 -0.01 1.69 16 42 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 44 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 46 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 0.99 6.11 -2.38 -0.01 0.98 16 50 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -74.43 399.95 -5.89 -80.32 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.19 Total: 17.36 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 5.73 Total: -41.08 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -8.98 Total: -103.88 kcal Atomic # 8 Polarization: -68.56 SS G_CDS: -4.54 Total: -73.11 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 74.39 SS G_CDS: -0.31 Total: 74.08 kcal Total: -74.43 -5.89 -80.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355678446.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.354 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds