Wall clock time and date at job start Tue Mar 31 2020 17:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.53004 * 109.47005 * 119.99813 * 2 1 3 5 5 N 1.46896 * 109.46730 * 176.40347 * 4 2 1 6 6 C 1.48001 * 110.99576 * 204.64282 * 5 4 2 7 7 C 1.50444 * 112.82831 * 191.34554 * 6 5 4 8 8 C 1.54310 * 108.50113 * 93.72423 * 7 6 5 9 9 C 1.45879 * 112.18866 * 281.46840 * 8 7 6 10 10 C 1.54313 * 112.18349 * 61.11865 * 9 8 7 11 11 C 1.47991 * 111.00252 * 75.92335 * 5 4 2 12 12 N 1.46496 * 109.47228 * 239.99785 * 2 1 3 13 13 S 1.65604 * 119.99984 * 94.99790 * 12 2 1 14 14 O 1.42104 * 106.39997 * 311.46601 * 13 12 2 15 15 O 1.42093 * 106.40152 * 178.54270 * 13 12 2 16 16 N 1.65606 * 107.21432 * 65.00073 * 13 12 2 17 17 C 1.46496 * 119.99568 * 90.00134 * 16 13 12 18 18 C 1.46495 * 119.99769 * 270.27522 * 16 13 12 19 19 C 1.50701 * 109.47097 * 264.72637 * 18 16 13 20 20 H 1.07996 * 120.00067 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00032 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00070 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46998 * 59.99566 * 23 21 19 25 25 H 1.48501 * 109.47222 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47336 * 300.00029 * 23 21 19 27 27 H 1.09001 * 109.47094 * 300.00239 * 1 2 3 28 28 H 1.08994 * 109.46843 * 60.00285 * 1 2 3 29 29 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47362 * 296.40351 * 4 2 1 31 31 H 1.09004 * 109.46847 * 56.40228 * 4 2 1 32 32 H 1.09002 * 108.81358 * 312.21007 * 6 5 4 33 33 H 1.08999 * 108.81742 * 70.48373 * 6 5 4 34 34 H 1.09005 * 109.63353 * 334.02727 * 7 6 5 35 35 H 1.08998 * 109.63373 * 213.43368 * 7 6 5 36 36 H 1.09002 * 108.94099 * 160.76825 * 8 7 6 37 37 H 1.09008 * 108.86556 * 42.11813 * 8 7 6 38 38 H 1.09003 * 108.93474 * 300.42423 * 9 8 7 39 39 H 1.08998 * 108.94274 * 181.81755 * 9 8 7 40 40 H 1.08999 * 109.62895 * 161.76459 * 10 9 8 41 41 H 1.08993 * 109.63302 * 41.16502 * 10 9 8 42 42 H 1.09003 * 108.81594 * 205.69411 * 11 5 4 43 43 H 1.09000 * 108.81340 * 324.08396 * 11 5 4 44 44 H 0.97006 * 120.00139 * 275.00293 * 12 2 1 45 45 H 1.08997 * 109.47019 * 89.99886 * 17 16 13 46 46 H 1.09006 * 109.46590 * 209.99610 * 17 16 13 47 47 H 1.08995 * 109.47435 * 329.99473 * 17 16 13 48 48 H 1.08999 * 109.47826 * 24.72377 * 18 16 13 49 49 H 1.09000 * 109.46745 * 144.72932 * 18 16 13 50 50 H 0.96998 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5064 -0.7969 1.2066 6 6 4.0026 -1.9332 2.0147 7 6 5.4917 -1.8937 2.2251 8 6 5.7785 -1.1791 3.5623 9 6 5.6759 0.2714 3.4449 10 6 4.2619 0.7232 3.0232 11 6 4.1150 0.5100 1.5411 12 7 2.0184 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 1.3247 1.0593 -2.7921 15 8 2.8776 -0.7635 -3.5084 16 7 3.7098 1.1300 -2.1620 17 6 5.0719 0.6262 -2.3537 18 6 3.4953 2.4744 -1.6209 19 6 3.5555 3.4818 -2.7401 20 1 3.7359 3.1535 -3.7530 21 6 3.3813 4.8228 -2.4707 22 7 3.1621 5.2226 -1.2372 23 14 3.4566 6.0716 -3.8579 24 1 2.4010 5.7661 -4.8567 25 1 3.2391 7.4343 -3.3094 26 1 4.7890 6.0069 -4.5104 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7303 -0.1715 2.1381 31 1 1.6250 -1.7286 1.2821 32 1 3.5097 -1.9150 2.9867 33 1 3.7437 -2.8636 1.5092 34 1 5.9625 -1.3457 1.4088 35 1 5.8835 -2.9102 2.2616 36 1 6.7848 -1.4370 3.8926 37 1 5.0623 -1.5253 4.3076 38 1 6.3943 0.6178 2.7019 39 1 5.9191 0.7223 4.4070 40 1 4.1306 1.7799 3.2560 41 1 3.5153 0.1327 3.5539 42 1 5.1002 0.5678 1.0784 43 1 3.4888 1.3038 1.1339 44 1 2.1110 -1.6563 -1.1948 45 1 5.4161 0.8818 -3.3559 46 1 5.7340 1.0790 -1.6156 47 1 5.0792 -0.4570 -2.2323 48 1 2.5174 2.5216 -1.1419 49 1 4.2702 2.6989 -0.8879 50 1 3.0392 6.1659 -1.0477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356678044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:21 Heat of formation + Delta-G solvation = -80.833036 kcal Electronic energy + Delta-G solvation = -29854.682178 eV Core-core repulsion = 26043.311785 eV Total energy + Delta-G solvation = -3811.370393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.48415 -36.79956 -36.26112 -35.35045 -34.98743 -33.65589 -32.37211 -32.14074 -29.82997 -27.69801 -27.47404 -25.00586 -24.94867 -24.35223 -22.21285 -21.29273 -20.41711 -19.47689 -18.89328 -17.23456 -16.53204 -16.25700 -16.21543 -16.16562 -15.51223 -14.87150 -14.69013 -14.43610 -14.12154 -13.69202 -13.41812 -13.28187 -13.11450 -13.08585 -12.89377 -12.33016 -12.26119 -12.19860 -12.04404 -11.95695 -11.85738 -11.54197 -11.32835 -11.28127 -11.08948 -11.03213 -11.02060 -10.83811 -10.71355 -10.64444 -10.62151 -10.59942 -10.34859 -10.16513 -9.95387 -9.69772 -9.09436 -8.39096 -8.06358 -7.92609 -6.02716 -4.05376 1.43639 3.36678 3.39673 3.45074 3.67348 3.86426 4.33528 4.49379 4.58888 4.65085 4.80308 4.98326 5.09604 5.14933 5.20135 5.29375 5.31545 5.35826 5.41556 5.48785 5.53280 5.63099 5.63323 5.67531 5.75381 5.81132 5.87189 5.91299 5.98101 6.03860 6.05632 6.08309 6.17117 6.22090 6.26915 6.38678 6.44188 6.47335 6.52695 6.66116 7.17181 7.22986 7.25187 7.42648 7.51989 7.74334 7.96215 8.26840 8.96707 9.59469 11.05602 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.004795 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.321310 B = 5838.240998 C = 6878.963255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.158 3.842 3 H 0.090 0.910 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.067 3.933 7 C -0.122 4.122 8 C -0.118 4.118 9 C -0.119 4.119 10 C -0.147 4.147 11 C 0.056 3.944 12 N -1.113 6.113 13 S 2.784 3.216 14 O -0.969 6.969 15 O -1.004 7.004 16 N -0.994 5.994 17 C 0.116 3.884 18 C 0.262 3.738 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.897 5.897 23 Si 0.894 3.106 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.407 0.593 45 H 0.044 0.956 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.033 0.967 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -14.201 11.841 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.049 3.951 3 H 0.107 0.893 4 C -0.075 4.075 5 N -0.265 5.265 6 C -0.060 4.060 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.186 4.186 11 C -0.072 4.072 12 N -0.871 5.871 13 S 2.791 3.209 14 O -0.952 6.952 15 O -0.989 6.989 16 N -0.836 5.836 17 C -0.030 4.030 18 C 0.139 3.861 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.537 5.537 23 Si 0.722 3.278 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.239 0.761 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.687 -13.957 10.665 17.646 hybrid contribution 0.095 0.621 0.602 0.870 sum 1.782 -13.336 11.268 17.549 Atomic orbital electron populations 1.22290 0.95329 1.02010 1.03305 1.20727 0.93381 0.96543 0.84414 0.89258 1.22349 0.88000 1.00580 0.96546 1.61754 1.05237 1.03813 1.55715 1.21733 0.95254 0.93681 0.95366 1.21429 0.95923 1.00684 0.97916 1.20589 1.01332 0.96098 0.97496 1.20550 0.97438 0.96095 1.01516 1.21912 0.96830 1.01699 0.98170 1.21978 1.01307 0.90206 0.93664 1.55988 1.82150 1.18836 1.30093 1.01846 0.73668 0.72434 0.72921 1.93616 1.52717 1.65228 1.83682 1.93525 1.82259 1.64099 1.58976 1.57536 1.17962 1.27270 1.80832 1.21102 0.83786 0.97105 1.01043 1.19014 0.96991 0.75833 0.94214 1.21482 1.48891 0.91493 0.94638 0.92337 1.24895 0.94987 0.98339 0.95683 1.69892 1.49219 1.16080 1.18479 0.86616 0.78686 0.80082 0.82412 1.20046 1.21257 1.20246 0.91954 0.90645 0.92618 0.93644 0.90904 0.95337 0.91489 0.90335 0.91479 0.92442 0.92679 0.91763 0.92655 0.91138 0.92228 0.90543 0.90401 0.76103 0.93742 0.91885 0.92887 0.94827 0.94929 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.52 37.16 0.35 -1.86 16 2 C 0.16 2.20 2.84 -67.93 -0.19 2.01 16 3 H 0.09 1.48 4.92 -51.93 -0.26 1.22 16 4 C 0.05 0.61 4.49 -3.82 -0.02 0.59 16 5 N -0.54 -6.16 4.36 -235.90 -1.03 -7.19 16 6 C 0.07 0.64 4.83 -4.49 -0.02 0.62 16 7 C -0.12 -1.09 5.63 -27.32 -0.15 -1.25 16 8 C -0.12 -1.01 5.30 -29.42 -0.16 -1.17 16 9 C -0.12 -1.14 5.30 -29.41 -0.16 -1.30 16 10 C -0.15 -1.59 5.50 -27.32 -0.15 -1.74 16 11 C 0.06 0.70 4.98 -4.50 -0.02 0.67 16 12 N -1.11 -16.60 5.28 -4.89 -0.03 -16.63 16 13 S 2.78 55.88 5.96 -107.50 -0.64 55.24 16 14 O -0.97 -23.24 16.37 -57.17 -0.94 -24.18 16 15 O -1.00 -21.67 17.21 -57.17 -0.98 -22.66 16 16 N -0.99 -20.40 3.23 -123.06 -0.40 -20.79 16 17 C 0.12 2.05 10.33 59.84 0.62 2.66 16 18 C 0.26 6.33 4.82 -5.20 -0.03 6.30 16 19 C -0.53 -14.66 9.38 -34.44 -0.32 -14.99 16 20 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 23 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.18 7.64 -51.93 -0.40 0.79 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.49 7.56 -51.93 -0.39 0.09 16 31 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.03 0.27 6.48 -51.93 -0.34 -0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.81 7.08 -51.93 -0.37 0.44 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.46 7.51 -51.92 -0.39 0.07 16 38 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.63 6.68 -51.93 -0.35 0.28 16 42 H 0.08 1.02 6.59 -51.93 -0.34 0.67 16 43 H 0.08 1.16 6.48 -51.93 -0.34 0.82 16 44 H 0.41 5.14 8.84 -34.48 -0.30 4.84 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 47 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 48 H 0.03 0.86 6.18 -51.93 -0.32 0.54 16 49 H 0.03 0.80 7.96 -51.93 -0.41 0.38 16 50 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -32.38 391.23 -11.49 -43.87 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.75 Total: 2.29 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.34 Total: -7.77 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.72 Total: -69.54 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.92 Total: -46.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 55.88 SS G_CDS: -0.64 Total: 55.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.38 -11.49 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356678044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.967 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds