Wall clock time and date at job start Tue Mar 31 2020 17:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.53004 * 109.47005 * 119.99813 * 2 1 3 5 5 N 1.46896 * 109.46730 * 176.40347 * 4 2 1 6 6 C 1.48001 * 110.99576 * 204.64282 * 5 4 2 7 7 C 1.50444 * 112.82831 * 191.34554 * 6 5 4 8 8 C 1.54310 * 108.50113 * 93.72423 * 7 6 5 9 9 C 1.45879 * 112.18866 * 281.46840 * 8 7 6 10 10 C 1.54313 * 112.18349 * 61.11865 * 9 8 7 11 11 C 1.47991 * 111.00252 * 75.92335 * 5 4 2 12 12 N 1.46496 * 109.47228 * 239.99785 * 2 1 3 13 13 S 1.65604 * 119.99984 * 94.99790 * 12 2 1 14 14 O 1.42104 * 106.39997 * 311.46601 * 13 12 2 15 15 O 1.42093 * 106.40152 * 178.54270 * 13 12 2 16 16 N 1.65606 * 107.21432 * 65.00073 * 13 12 2 17 17 C 1.46496 * 119.99568 * 90.00134 * 16 13 12 18 18 C 1.46495 * 119.99769 * 270.27522 * 16 13 12 19 19 C 1.50701 * 109.47097 * 264.72637 * 18 16 13 20 20 H 1.07996 * 120.00067 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00032 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00070 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46998 * 59.99566 * 23 21 19 25 25 H 1.48501 * 109.47222 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47336 * 300.00029 * 23 21 19 27 27 H 1.09001 * 109.47094 * 300.00239 * 1 2 3 28 28 H 1.08994 * 109.46843 * 60.00285 * 1 2 3 29 29 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47362 * 296.40351 * 4 2 1 31 31 H 1.09004 * 109.46847 * 56.40228 * 4 2 1 32 32 H 1.09002 * 108.81358 * 312.21007 * 6 5 4 33 33 H 1.08999 * 108.81742 * 70.48373 * 6 5 4 34 34 H 1.09005 * 109.63353 * 334.02727 * 7 6 5 35 35 H 1.08998 * 109.63373 * 213.43368 * 7 6 5 36 36 H 1.09002 * 108.94099 * 160.76825 * 8 7 6 37 37 H 1.09008 * 108.86556 * 42.11813 * 8 7 6 38 38 H 1.09003 * 108.93474 * 300.42423 * 9 8 7 39 39 H 1.08998 * 108.94274 * 181.81755 * 9 8 7 40 40 H 1.08999 * 109.62895 * 161.76459 * 10 9 8 41 41 H 1.08993 * 109.63302 * 41.16502 * 10 9 8 42 42 H 1.09003 * 108.81594 * 205.69411 * 11 5 4 43 43 H 1.09000 * 108.81340 * 324.08396 * 11 5 4 44 44 H 0.97006 * 120.00139 * 275.00293 * 12 2 1 45 45 H 1.08997 * 109.47019 * 89.99886 * 17 16 13 46 46 H 1.09006 * 109.46590 * 209.99610 * 17 16 13 47 47 H 1.08995 * 109.47435 * 329.99473 * 17 16 13 48 48 H 1.08999 * 109.47826 * 24.72377 * 18 16 13 49 49 H 1.09000 * 109.46745 * 144.72932 * 18 16 13 50 50 H 0.96998 * 120.00174 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5064 -0.7969 1.2066 6 6 4.0026 -1.9332 2.0147 7 6 5.4917 -1.8937 2.2251 8 6 5.7785 -1.1791 3.5623 9 6 5.6759 0.2714 3.4449 10 6 4.2619 0.7232 3.0232 11 6 4.1150 0.5100 1.5411 12 7 2.0184 -0.6906 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 1.3247 1.0593 -2.7921 15 8 2.8776 -0.7635 -3.5084 16 7 3.7098 1.1300 -2.1620 17 6 5.0719 0.6262 -2.3537 18 6 3.4953 2.4744 -1.6209 19 6 3.5555 3.4818 -2.7401 20 1 3.7359 3.1535 -3.7530 21 6 3.3813 4.8228 -2.4707 22 7 3.1621 5.2226 -1.2372 23 14 3.4566 6.0716 -3.8579 24 1 2.4010 5.7661 -4.8567 25 1 3.2391 7.4343 -3.3094 26 1 4.7890 6.0069 -4.5104 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7303 -0.1715 2.1381 31 1 1.6250 -1.7286 1.2821 32 1 3.5097 -1.9150 2.9867 33 1 3.7437 -2.8636 1.5092 34 1 5.9625 -1.3457 1.4088 35 1 5.8835 -2.9102 2.2616 36 1 6.7848 -1.4370 3.8926 37 1 5.0623 -1.5253 4.3076 38 1 6.3943 0.6178 2.7019 39 1 5.9191 0.7223 4.4070 40 1 4.1306 1.7799 3.2560 41 1 3.5153 0.1327 3.5539 42 1 5.1002 0.5678 1.0784 43 1 3.4888 1.3038 1.1339 44 1 2.1110 -1.6563 -1.1948 45 1 5.4161 0.8818 -3.3559 46 1 5.7340 1.0790 -1.6156 47 1 5.0792 -0.4570 -2.2323 48 1 2.5174 2.5216 -1.1419 49 1 4.2702 2.6989 -0.8879 50 1 3.0392 6.1659 -1.0477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356678044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:20 Heat of formation + Delta-G solvation = -104.586438 kcal Electronic energy + Delta-G solvation = -29855.712203 eV Core-core repulsion = 26043.311785 eV Total energy + Delta-G solvation = -3812.400418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.35158 -38.27462 -37.58479 -37.10176 -36.74391 -34.60019 -34.45402 -32.95304 -31.01874 -29.60160 -28.37038 -26.72495 -25.83556 -25.25897 -24.13573 -22.35429 -21.20663 -20.43790 -20.35750 -18.99378 -18.20716 -18.11546 -17.39526 -17.12634 -16.82611 -16.46712 -15.90991 -15.63797 -15.20945 -15.00565 -14.83982 -14.52786 -14.39239 -14.20602 -13.90273 -13.86833 -13.78858 -13.25697 -13.24538 -13.12450 -13.11059 -13.02660 -12.98615 -12.91410 -12.75563 -12.44488 -12.41060 -12.37884 -12.15544 -11.87686 -11.73518 -11.69788 -11.51129 -11.45544 -11.37647 -11.01321 -10.57369 -10.34504 -9.69113 -8.94405 -8.16920 -6.27434 -0.17811 1.39366 1.42624 1.49553 2.16214 2.42630 2.76278 2.97082 3.13672 3.56362 3.80196 3.84309 3.91058 4.12603 4.18198 4.21320 4.26197 4.37632 4.43342 4.50187 4.54997 4.62643 4.69503 4.78004 4.79063 4.85773 4.90443 4.93272 4.97508 5.03497 5.09037 5.13918 5.17675 5.23003 5.28189 5.32795 5.34585 5.38731 5.42909 5.49164 5.53654 5.54914 5.74737 5.96760 6.17561 6.25972 6.38337 6.42358 6.80104 7.40609 8.89637 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.004795 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.321310 B = 5838.240998 C = 6878.963255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.154 3.846 3 H 0.058 0.942 4 C 0.063 3.937 5 N -0.550 5.550 6 C 0.067 3.933 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.142 4.142 11 C 0.063 3.937 12 N -1.091 6.091 13 S 2.797 3.203 14 O -1.013 7.013 15 O -1.019 7.019 16 N -0.997 5.997 17 C 0.111 3.889 18 C 0.283 3.717 19 C -0.550 4.550 20 H 0.046 0.954 21 C 0.017 3.983 22 N -0.920 5.920 23 Si 0.949 3.051 24 H -0.280 1.280 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.422 0.578 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.015 0.985 49 H 0.027 0.973 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -15.935 13.051 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.046 3.954 3 H 0.076 0.924 4 C -0.067 4.067 5 N -0.274 5.274 6 C -0.060 4.060 7 C -0.158 4.158 8 C -0.152 4.152 9 C -0.153 4.153 10 C -0.181 4.181 11 C -0.064 4.064 12 N -0.854 5.854 13 S 2.805 3.195 14 O -0.996 6.996 15 O -1.003 7.003 16 N -0.839 5.839 17 C -0.034 4.034 18 C 0.159 3.841 19 C -0.589 4.589 20 H 0.065 0.935 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.200 1.200 26 H -0.191 1.191 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.258 0.742 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.033 0.967 49 H 0.045 0.955 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.068 -15.719 11.869 19.805 hybrid contribution -0.021 1.107 0.257 1.136 sum 2.047 -14.612 12.126 19.098 Atomic orbital electron populations 1.22263 0.94421 1.03510 1.02532 1.20855 0.94125 0.95376 0.85068 0.92374 1.22277 0.87903 1.01620 0.94876 1.61717 1.05396 1.03689 1.56637 1.21812 0.95600 0.92959 0.95601 1.21424 0.95506 1.01388 0.97452 1.20558 1.02165 0.94969 0.97513 1.20522 0.96136 0.97166 1.01426 1.21841 0.98022 1.01201 0.97020 1.21797 0.99960 0.90196 0.94494 1.55447 1.81539 1.19280 1.29138 1.01206 0.72937 0.71983 0.73418 1.93563 1.54386 1.66833 1.84824 1.93493 1.82388 1.64084 1.60368 1.57410 1.19443 1.26253 1.80764 1.21281 0.82468 0.98662 1.01021 1.18538 0.95677 0.76953 0.92892 1.21836 1.49208 0.92846 0.95015 0.93529 1.25638 0.94660 1.00083 0.97924 1.69976 1.49542 1.16598 1.19866 0.85747 0.78871 0.78265 0.79659 1.20543 1.20040 1.19084 0.90277 0.93913 0.89925 0.92797 0.88259 0.94451 0.90356 0.91997 0.89870 0.91478 0.91914 0.92854 0.91972 0.92310 0.91370 0.91797 0.93464 0.74207 0.94441 0.90742 0.90371 0.96669 0.95540 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.52 71.98 0.69 -3.54 16 2 C 0.15 4.21 2.84 45.00 0.13 4.33 16 3 H 0.06 2.00 4.92 -2.39 -0.01 1.99 16 4 C 0.06 1.26 4.49 86.31 0.39 1.65 16 5 N -0.55 -11.65 4.36 -900.27 -3.93 -15.57 16 6 C 0.07 1.08 4.83 85.26 0.41 1.49 16 7 C -0.12 -1.86 5.63 30.21 0.17 -1.69 16 8 C -0.11 -1.69 5.30 28.86 0.15 -1.54 16 9 C -0.11 -2.08 5.30 28.86 0.15 -1.93 16 10 C -0.14 -2.98 5.50 30.22 0.17 -2.82 16 11 C 0.06 1.58 4.98 85.27 0.42 2.01 16 12 N -1.09 -31.75 5.28 -169.38 -0.90 -32.65 16 13 S 2.80 113.68 5.96 -56.49 -0.34 113.34 16 14 O -1.01 -50.26 16.37 -128.00 -2.10 -52.35 16 15 O -1.02 -43.64 17.21 -128.00 -2.20 -45.85 16 16 N -1.00 -41.80 3.23 -543.25 -1.75 -43.55 16 17 C 0.11 3.90 10.33 127.77 1.32 5.22 16 18 C 0.28 14.21 4.82 85.63 0.41 14.62 16 19 C -0.55 -31.48 9.38 25.60 0.24 -31.24 16 20 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 21 C 0.02 0.95 5.46 84.66 0.46 1.41 16 22 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 23 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.36 7.64 -2.39 -0.02 1.34 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.03 7.56 -2.39 -0.02 1.01 16 31 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 32 H 0.04 0.56 6.48 -2.39 -0.02 0.54 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.19 7.08 -2.38 -0.02 1.17 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.86 7.51 -2.38 -0.02 0.84 16 38 H 0.05 1.08 7.52 -2.39 -0.02 1.06 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.31 6.68 -2.39 -0.02 1.29 16 42 H 0.06 1.73 6.59 -2.39 -0.02 1.72 16 43 H 0.05 1.47 6.48 -2.39 -0.02 1.46 16 44 H 0.42 9.81 8.84 -96.74 -0.85 8.95 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 2.41 7.94 -2.38 -0.02 2.39 16 47 H 0.08 2.32 7.79 -2.39 -0.02 2.30 16 48 H 0.02 0.83 6.18 -2.39 -0.01 0.81 16 49 H 0.03 1.35 7.96 -2.39 -0.02 1.33 16 50 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -70.70 391.23 -3.72 -74.42 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.06 Total: 20.29 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 5.11 Total: -12.01 kcal Atomic # 7 Polarization: -138.74 SS G_CDS: -6.29 Total: -145.03 kcal Atomic # 8 Polarization: -93.90 SS G_CDS: -4.30 Total: -98.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 113.68 SS G_CDS: -0.34 Total: 113.34 kcal Total: -70.70 -3.72 -74.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356678044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.163 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds