Wall clock time and date at job start Tue Mar 31 2020 18:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48508 * 109.46744 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.47447 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00353 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46956 * 110.99700 * 293.79427 * 16 15 14 18 18 C 1.53057 * 109.36567 * 176.81222 * 17 16 15 19 19 N 1.46954 * 109.36119 * 58.40464 * 18 17 16 20 20 C 1.38408 * 110.99649 * 176.81306 * 19 18 17 21 21 N 1.32504 * 119.21799 * 123.52836 * 20 19 18 22 22 C 1.32267 * 120.73863 * 179.71549 * 21 20 19 23 23 C 1.38603 * 119.20270 * 0.54782 * 22 21 20 24 24 C 1.38611 * 118.55337 * 359.72654 * 23 22 21 25 25 N 1.32274 * 119.19844 * 0.02562 * 24 23 22 26 26 C 1.46955 * 110.88206 * 300.67565 * 19 18 17 27 27 C 1.46961 * 111.00124 * 170.00033 * 16 15 14 28 28 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 30 30 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 31 31 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 32 32 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 33 33 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 35 35 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 36 36 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 37 37 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 38 38 H 1.08999 * 109.49195 * 296.77993 * 17 16 15 39 39 H 1.08994 * 109.48776 * 56.84829 * 17 16 15 40 40 H 1.09000 * 109.48934 * 298.43863 * 18 17 16 41 41 H 1.09000 * 109.50629 * 178.38375 * 18 17 16 42 42 H 1.08004 * 120.40214 * 180.25320 * 22 21 20 43 43 H 1.08001 * 120.72447 * 179.70889 * 23 22 21 44 44 H 1.08003 * 120.40081 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.49196 * 299.35935 * 26 19 18 46 46 H 1.09000 * 109.50922 * 179.29984 * 26 19 18 47 47 H 1.09000 * 109.48982 * 303.14979 * 27 16 15 48 48 H 1.08998 * 109.48931 * 63.19794 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4277 -8.5659 -0.0125 16 7 1.6932 -9.8381 -0.0199 17 6 0.9492 -10.0239 1.2337 18 6 0.1368 -11.3186 1.1546 19 7 1.0438 -12.4489 0.9115 20 6 0.3518 -13.6476 0.9046 21 7 0.4293 -14.4331 -0.1597 22 6 -0.2151 -15.5875 -0.1963 23 6 -0.9866 -15.9660 0.8912 24 6 -1.0501 -15.1180 1.9858 25 7 -0.3771 -13.9796 1.9600 26 6 1.7878 -12.2632 -0.3421 27 6 2.6003 -10.9685 -0.2630 28 1 -0.4849 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8898 31 1 2.8721 -3.6043 0.8894 32 1 2.8721 -3.6043 -0.8905 33 1 3.1359 -6.1343 -0.0004 34 1 0.8061 -7.4652 0.8818 35 1 0.8074 -7.4565 -0.8982 36 1 3.0550 -8.5038 -0.9018 37 1 3.0538 -8.5126 0.8782 38 1 1.6496 -10.0844 2.0668 39 1 0.2756 -9.1806 1.3852 40 1 -0.5824 -11.2474 0.3386 41 1 -0.3936 -11.4735 2.0942 42 1 -0.1448 -16.2255 -1.0649 43 1 -1.5269 -16.9012 0.8856 44 1 -1.6426 -15.3832 2.8489 45 1 1.0875 -12.2027 -1.1752 46 1 2.4615 -13.1065 -0.4940 47 1 3.1304 -10.8138 -1.2028 48 1 3.3196 -11.0395 0.5528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360026436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:32 Heat of formation + Delta-G solvation = 35.599087 kcal Electronic energy + Delta-G solvation = -27243.146356 eV Core-core repulsion = 23333.673638 eV Total energy + Delta-G solvation = -3909.472718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68939 -39.69623 -38.98005 -36.54706 -34.31051 -34.22241 -33.41702 -31.78045 -31.44739 -30.97821 -29.27531 -26.65346 -25.44310 -25.19454 -23.80442 -23.33150 -22.15442 -21.29101 -20.39845 -19.58163 -18.41823 -17.88788 -16.87803 -16.45432 -16.07204 -15.92706 -15.69704 -15.63751 -15.25225 -14.99820 -14.93890 -14.65916 -14.47010 -14.26562 -14.09905 -13.95172 -13.57177 -13.01799 -12.58711 -12.29759 -12.16360 -12.07586 -11.77014 -11.60262 -11.45169 -11.41434 -11.25443 -11.13656 -11.06317 -10.90456 -10.63052 -10.57909 -9.93024 -9.64173 -9.63522 -9.16118 -8.99366 -8.89574 -8.75142 -8.70741 -8.29765 -5.93974 -3.98374 0.48527 0.65714 2.67794 3.18160 3.29603 3.31934 3.34809 3.40820 3.43469 3.67275 3.90098 4.13713 4.21317 4.45572 4.49532 4.51442 4.65856 4.67822 4.71522 4.84988 4.86823 4.99511 5.03837 5.14181 5.27163 5.30307 5.40895 5.42175 5.47391 5.50289 5.58111 5.61209 5.78851 5.84379 5.99408 6.13243 6.25718 6.27076 6.28334 6.56566 6.64032 6.76748 6.80940 6.92280 7.69062 7.76678 7.89081 7.90897 8.09747 8.41057 8.81594 9.10410 9.65079 11.16985 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.001515 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.812144 B =18482.395260 C =18890.804706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.745 5.745 14 C 0.122 3.878 15 C 0.047 3.953 16 N -0.537 5.537 17 C 0.051 3.949 18 C 0.071 3.929 19 N -0.463 5.463 20 C 0.495 3.505 21 N -0.552 5.552 22 C 0.174 3.826 23 C -0.264 4.264 24 C 0.175 3.825 25 N -0.531 5.531 26 C 0.074 3.926 27 C 0.055 3.945 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.170 0.830 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.283 -35.852 1.139 36.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.400 5.400 14 C -0.003 4.003 15 C -0.081 4.081 16 N -0.263 5.263 17 C -0.078 4.078 18 C -0.055 4.055 19 N -0.182 5.182 20 C 0.139 3.861 21 N -0.272 5.272 22 C 0.007 3.993 23 C -0.288 4.288 24 C 0.007 3.993 25 N -0.249 5.249 26 C -0.053 4.053 27 C -0.073 4.073 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.185 0.815 43 H 0.165 0.835 44 H 0.187 0.813 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.750 -34.755 1.149 34.882 hybrid contribution 0.615 -0.152 0.151 0.652 sum 3.365 -34.907 1.299 35.093 Atomic orbital electron populations 1.70002 1.06050 1.26554 1.50226 1.25026 0.94822 0.99214 0.95327 0.86591 0.79759 0.83533 0.78049 1.20684 1.21235 1.19908 1.21228 0.92927 0.91039 1.51345 0.92611 1.18904 0.93207 0.89389 0.98644 1.21860 1.00703 0.91929 1.02460 1.21549 0.88647 0.85560 0.74407 1.90674 1.14497 1.87616 1.48100 1.46124 1.10008 1.05597 1.78271 1.21161 0.94355 0.82001 1.02747 1.22238 0.95540 0.88547 1.01752 1.62060 1.27639 1.01829 1.34754 1.22325 0.97754 0.96993 0.90688 1.22298 0.93143 0.87078 1.02984 1.58609 1.24488 0.99781 1.35365 1.21068 0.87701 0.92318 0.84972 1.68399 1.25306 1.07244 1.26225 1.23086 0.88135 0.90813 0.97314 1.22755 1.05118 1.03723 0.97212 1.23133 0.91637 0.87288 0.97237 1.68034 1.10508 1.19670 1.26723 1.22126 0.97289 0.97552 0.88377 1.22259 0.93983 0.89194 1.01899 0.92970 0.95797 0.95823 0.90271 0.90245 0.77047 0.91902 0.90961 0.89856 0.93865 0.93223 0.88639 0.92613 0.88237 0.81467 0.83521 0.81258 0.91736 0.89011 0.89221 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.64 5.64 -27.89 -0.16 -2.79 16 11 C 0.51 9.88 7.83 -10.98 -0.09 9.80 16 12 O -0.53 -12.81 15.98 5.55 0.09 -12.72 16 13 N -0.75 -10.30 5.56 -60.30 -0.33 -10.63 16 14 C 0.12 1.51 5.61 -4.04 -0.02 1.49 16 15 C 0.05 0.42 5.07 -3.83 -0.02 0.40 16 16 N -0.54 -4.90 4.71 -234.46 -1.10 -6.01 16 17 C 0.05 0.46 5.41 -3.76 -0.02 0.44 16 18 C 0.07 0.67 5.46 -3.77 -0.02 0.65 16 19 N -0.46 -4.55 4.77 -175.23 -0.84 -5.39 16 20 C 0.50 5.07 7.17 -322.79 -2.31 2.75 16 21 N -0.55 -5.09 8.70 -13.93 -0.12 -5.21 16 22 C 0.17 1.07 11.30 -17.23 -0.19 0.88 16 23 C -0.26 -1.29 10.16 -39.31 -0.40 -1.69 16 24 C 0.17 1.12 11.30 -17.22 -0.19 0.92 16 25 N -0.53 -5.18 9.72 -13.93 -0.14 -5.31 16 26 C 0.07 0.63 4.77 -3.76 -0.02 0.61 16 27 C 0.05 0.43 5.61 -3.76 -0.02 0.41 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 34 H 0.06 0.84 6.50 -51.93 -0.34 0.50 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 37 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.90 6.34 -51.93 -0.33 0.57 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.93 7.64 -51.93 -0.40 0.53 16 42 H 0.17 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 46 H 0.09 0.76 7.81 -51.93 -0.41 0.35 16 47 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -36.96 392.01 -12.50 -49.46 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.68 Total: -0.89 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.00 Total: 0.94 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -1.80 Total: -59.45 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.96 -12.50 -49.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360026436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.057 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds