Wall clock time and date at job start Tue Mar 31 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48508 * 109.46744 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.47447 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00353 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46956 * 110.99700 * 293.79427 * 16 15 14 18 18 C 1.53057 * 109.36567 * 176.81222 * 17 16 15 19 19 N 1.46954 * 109.36119 * 58.40464 * 18 17 16 20 20 C 1.38408 * 110.99649 * 176.81306 * 19 18 17 21 21 N 1.32504 * 119.21799 * 123.52836 * 20 19 18 22 22 C 1.32267 * 120.73863 * 179.71549 * 21 20 19 23 23 C 1.38603 * 119.20270 * 0.54782 * 22 21 20 24 24 C 1.38611 * 118.55337 * 359.72654 * 23 22 21 25 25 N 1.32274 * 119.19844 * 0.02562 * 24 23 22 26 26 C 1.46955 * 110.88206 * 300.67565 * 19 18 17 27 27 C 1.46961 * 111.00124 * 170.00033 * 16 15 14 28 28 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 30 30 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 31 31 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 32 32 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 33 33 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 35 35 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 36 36 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 37 37 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 38 38 H 1.08999 * 109.49195 * 296.77993 * 17 16 15 39 39 H 1.08994 * 109.48776 * 56.84829 * 17 16 15 40 40 H 1.09000 * 109.48934 * 298.43863 * 18 17 16 41 41 H 1.09000 * 109.50629 * 178.38375 * 18 17 16 42 42 H 1.08004 * 120.40214 * 180.25320 * 22 21 20 43 43 H 1.08001 * 120.72447 * 179.70889 * 23 22 21 44 44 H 1.08003 * 120.40081 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.49196 * 299.35935 * 26 19 18 46 46 H 1.09000 * 109.50922 * 179.29984 * 26 19 18 47 47 H 1.09000 * 109.48982 * 303.14979 * 27 16 15 48 48 H 1.08998 * 109.48931 * 63.19794 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4277 -8.5659 -0.0125 16 7 1.6932 -9.8381 -0.0199 17 6 0.9492 -10.0239 1.2337 18 6 0.1368 -11.3186 1.1546 19 7 1.0438 -12.4489 0.9115 20 6 0.3518 -13.6476 0.9046 21 7 0.4293 -14.4331 -0.1597 22 6 -0.2151 -15.5875 -0.1963 23 6 -0.9866 -15.9660 0.8912 24 6 -1.0501 -15.1180 1.9858 25 7 -0.3771 -13.9796 1.9600 26 6 1.7878 -12.2632 -0.3421 27 6 2.6003 -10.9685 -0.2630 28 1 -0.4849 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8898 31 1 2.8721 -3.6043 0.8894 32 1 2.8721 -3.6043 -0.8905 33 1 3.1359 -6.1343 -0.0004 34 1 0.8061 -7.4652 0.8818 35 1 0.8074 -7.4565 -0.8982 36 1 3.0550 -8.5038 -0.9018 37 1 3.0538 -8.5126 0.8782 38 1 1.6496 -10.0844 2.0668 39 1 0.2756 -9.1806 1.3852 40 1 -0.5824 -11.2474 0.3386 41 1 -0.3936 -11.4735 2.0942 42 1 -0.1448 -16.2255 -1.0649 43 1 -1.5269 -16.9012 0.8856 44 1 -1.6426 -15.3832 2.8489 45 1 1.0875 -12.2027 -1.1752 46 1 2.4615 -13.1065 -0.4940 47 1 3.1304 -10.8138 -1.2028 48 1 3.3196 -11.0395 0.5528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360026436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:31 Heat of formation + Delta-G solvation = 8.190886 kcal Electronic energy + Delta-G solvation = -27244.334865 eV Core-core repulsion = 23333.673638 eV Total energy + Delta-G solvation = -3910.661226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25892 -40.75777 -40.12270 -37.37676 -35.62913 -35.40054 -34.78140 -33.07623 -32.30104 -32.12076 -30.26434 -27.97845 -26.76488 -25.90986 -24.49489 -24.05910 -23.55487 -22.56845 -21.26706 -20.95873 -19.04311 -18.78231 -18.46200 -17.47715 -17.20524 -16.93974 -16.69689 -16.49865 -16.42462 -16.11271 -16.01322 -15.59322 -15.34849 -15.33083 -15.02418 -14.60650 -14.52090 -14.33452 -14.10995 -13.94439 -13.27275 -13.21539 -12.90879 -12.80850 -12.53753 -12.46614 -12.43544 -12.13277 -11.95436 -11.90188 -11.88231 -11.84279 -11.61811 -11.29081 -11.20392 -10.74045 -10.55621 -10.19782 -10.04649 -9.52909 -9.39618 -8.16595 -6.30741 -0.04389 0.17010 1.43188 1.46065 1.56950 1.73964 2.06318 2.14504 2.44680 2.77637 2.96382 3.16439 3.18656 3.57188 3.73081 3.79906 3.81296 4.00213 4.03354 4.13332 4.13940 4.22815 4.29833 4.33638 4.35977 4.47114 4.52641 4.54907 4.58617 4.74035 4.75596 4.83836 4.87153 4.89038 4.91987 5.00371 5.12548 5.29390 5.45434 5.48811 5.53165 5.65268 5.69382 5.87213 5.92117 5.95514 6.19125 6.23678 6.64179 6.88080 7.12633 7.37637 7.40048 8.96119 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.001515 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.812144 B =18482.395260 C =18890.804706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.716 5.716 14 C 0.124 3.876 15 C 0.060 3.940 16 N -0.548 5.548 17 C 0.056 3.944 18 C 0.080 3.920 19 N -0.471 5.471 20 C 0.470 3.530 21 N -0.572 5.572 22 C 0.159 3.841 23 C -0.247 4.247 24 C 0.159 3.841 25 N -0.560 5.560 26 C 0.081 3.919 27 C 0.060 3.940 28 H 0.262 0.738 29 H -0.018 1.018 30 H -0.018 1.018 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.418 0.582 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.199 0.801 43 H 0.184 0.816 44 H 0.198 0.802 45 H 0.050 0.950 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -37.330 1.006 37.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.158 4.158 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.371 5.371 14 C -0.001 4.001 15 C -0.068 4.068 16 N -0.274 5.274 17 C -0.072 4.072 18 C -0.047 4.047 19 N -0.191 5.191 20 C 0.114 3.886 21 N -0.292 5.292 22 C -0.007 4.007 23 C -0.270 4.270 24 C -0.007 4.007 25 N -0.279 5.279 26 C -0.046 4.046 27 C -0.067 4.067 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.216 0.784 43 H 0.202 0.798 44 H 0.215 0.785 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.126 0.874 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.443 -36.308 1.014 36.728 hybrid contribution -0.295 0.118 0.187 0.369 sum 5.148 -36.190 1.201 36.574 Atomic orbital electron populations 1.70187 1.08346 1.27761 1.51550 1.26149 0.95714 1.03981 0.94658 0.85310 0.78666 0.77683 0.78504 1.19716 1.21265 1.17843 1.21732 0.94052 0.91593 1.50690 0.90476 1.18710 0.93803 0.92607 0.94677 1.21630 0.99255 0.89926 1.04989 1.21350 0.87780 0.86807 0.74153 1.90662 1.16879 1.88423 1.51147 1.45760 1.11068 1.04561 1.75680 1.21203 0.95079 0.82386 1.01398 1.22116 0.94437 0.86847 1.03371 1.62017 1.28319 1.02388 1.34678 1.22238 0.97626 0.96473 0.90911 1.22143 0.92985 0.87484 1.02059 1.58667 1.24747 0.99826 1.35906 1.21196 0.88896 0.92768 0.85715 1.68396 1.26286 1.08422 1.26110 1.23741 0.87730 0.90309 0.98881 1.23155 1.03702 1.04348 0.95772 1.23757 0.91402 0.86668 0.98860 1.68024 1.11400 1.21423 1.27073 1.22057 0.96891 0.98086 0.87595 1.22281 0.93512 0.88056 1.02884 0.92913 1.00003 1.00003 0.87613 0.87568 0.74472 0.93018 0.92784 0.87918 0.92415 0.93052 0.89451 0.94112 0.88770 0.78450 0.79831 0.78479 0.93178 0.88816 0.87442 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.23 4.26 29.85 0.13 2.36 16 10 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 11 C 0.51 19.82 7.83 87.66 0.69 20.51 16 12 O -0.59 -29.67 15.98 -3.04 -0.05 -29.72 16 13 N -0.72 -18.69 5.56 -463.07 -2.57 -21.26 16 14 C 0.12 2.99 5.61 86.38 0.48 3.47 16 15 C 0.06 0.95 5.07 86.30 0.44 1.39 16 16 N -0.55 -9.51 4.71 -895.70 -4.22 -13.73 16 17 C 0.06 1.03 5.41 86.31 0.47 1.49 16 18 C 0.08 1.58 5.46 86.31 0.47 2.05 16 19 N -0.47 -9.48 4.77 -708.30 -3.38 -12.86 16 20 C 0.47 9.78 7.17 261.48 1.88 11.66 16 21 N -0.57 -10.40 8.70 -197.98 -1.72 -12.12 16 22 C 0.16 1.72 11.30 84.71 0.96 2.68 16 23 C -0.25 -1.86 10.16 22.45 0.23 -1.63 16 24 C 0.16 1.85 11.30 84.72 0.96 2.80 16 25 N -0.56 -10.98 9.72 -197.97 -1.92 -12.90 16 26 C 0.08 1.38 4.77 86.31 0.41 1.79 16 27 C 0.06 0.85 5.61 86.31 0.48 1.34 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 30 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 31 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.42 7.42 8.47 -92.71 -0.79 6.63 16 34 H 0.05 1.40 6.50 -2.38 -0.02 1.38 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.28 8.03 -2.38 -0.02 1.26 16 37 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.73 6.34 -2.39 -0.02 1.71 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.91 7.64 -2.39 -0.02 1.89 16 42 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 44 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.05 0.98 8.03 -2.39 -0.02 0.96 16 46 H 0.09 1.53 7.81 -2.39 -0.02 1.51 16 47 H 0.11 1.14 8.07 -2.39 -0.02 1.12 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -85.54 392.01 -2.93 -88.48 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.17 Total: 12.90 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 8.45 Total: 14.53 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -13.53 Total: -132.71 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -85.54 -2.93 -88.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360026436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.667 kcal (2) G-P(sol) polarization free energy of solvation -85.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds