Wall clock time and date at job start Tue Mar 31 2020 18:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99749 * 2 1 4 4 H 1.48506 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47069 * 299.99925 * 3 2 1 6 6 H 1.48499 * 109.47157 * 59.99943 * 3 2 1 7 7 C 1.38950 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99585 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99746 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00018 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99819 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47141 * 179.97438 * 12 10 9 14 14 C 1.46847 * 111.00220 * 169.99662 * 13 12 10 15 15 C 1.53038 * 109.52973 * 185.83944 * 14 13 12 16 16 C 1.53117 * 109.27502 * 300.82407 * 15 14 13 17 17 C 1.50699 * 109.52261 * 177.55643 * 16 15 14 18 18 N 1.30842 * 126.46634 * 300.24566 * 17 16 15 19 19 N 1.28907 * 109.74360 * 180.23148 * 18 17 16 20 20 C 1.29843 * 109.47712 * 359.73497 * 19 18 17 21 21 N 1.34688 * 126.46852 * 120.12383 * 17 16 15 22 22 C 1.46266 * 128.84506 * 0.10345 * 21 17 16 23 23 C 1.53318 * 108.72988 * 162.64401 * 22 21 17 24 24 C 1.53145 * 109.57817 * 50.29815 * 23 22 21 25 25 C 1.50802 * 128.52384 * 180.14341 * 20 19 18 26 26 C 1.53119 * 109.21564 * 57.61841 * 16 15 14 27 27 C 1.46844 * 111.00083 * 294.20868 * 13 12 10 28 28 H 0.96997 * 120.00162 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99859 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47273 * 59.99418 * 12 10 9 31 31 H 1.09009 * 109.47007 * 299.99592 * 12 10 9 32 32 H 1.09007 * 109.46157 * 65.82486 * 14 13 12 33 33 H 1.09003 * 109.45946 * 305.85232 * 14 13 12 34 34 H 1.09000 * 109.50774 * 180.88044 * 15 14 13 35 35 H 1.09001 * 109.52983 * 60.78012 * 15 14 13 36 36 H 1.09004 * 109.52440 * 297.68336 * 16 15 14 37 37 H 1.08998 * 109.58852 * 282.41702 * 22 21 17 38 38 H 1.09004 * 109.59204 * 42.86904 * 22 21 17 39 39 H 1.09000 * 109.44816 * 170.32850 * 23 22 21 40 40 H 1.08993 * 109.45618 * 290.26244 * 23 22 21 41 41 H 1.08997 * 109.49940 * 50.51009 * 24 23 22 42 42 H 1.09002 * 109.49746 * 170.61639 * 24 23 22 43 43 H 1.08997 * 109.72877 * 44.41543 * 25 20 19 44 44 H 1.08997 * 109.73250 * 283.73555 * 25 20 19 45 45 H 1.08998 * 109.50393 * 62.32135 * 26 16 15 46 46 H 1.09001 * 109.50474 * 182.43411 * 26 16 15 47 47 H 1.09001 * 109.46081 * 294.17174 * 27 13 12 48 48 H 1.08994 * 109.46650 * 54.15269 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5143 -7.2569 0.2359 15 6 2.5508 -8.3744 0.3736 16 6 3.3845 -8.4512 -0.9084 17 6 4.4462 -9.5098 -0.7560 18 7 5.3923 -9.5380 0.1474 19 7 6.1246 -10.5854 -0.0215 20 6 5.6762 -11.2690 -1.0302 21 7 4.5988 -10.6068 -1.5225 22 6 3.8014 -11.0435 -2.6683 23 6 4.6034 -12.0845 -3.4581 24 6 5.1226 -13.1641 -2.5040 25 6 6.2051 -12.5622 -1.5978 26 6 4.0475 -7.0942 -1.1604 27 6 2.9677 -6.0135 -1.2520 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6175 -4.9205 -0.8913 31 1 0.6169 -4.9209 0.8887 32 1 0.8531 -7.4761 -0.6024 33 1 0.9285 -7.1900 1.1527 34 1 2.0420 -9.3249 0.5343 35 1 3.2039 -8.1634 1.2204 36 1 2.7378 -8.7023 -1.7491 37 1 2.8704 -11.4885 -2.3173 38 1 3.5821 -10.1886 -3.3081 39 1 3.9613 -12.5430 -4.2102 40 1 5.4462 -11.5977 -3.9486 41 1 4.3004 -13.5347 -1.8919 42 1 5.5467 -13.9860 -3.0808 43 1 6.4326 -13.2541 -0.7870 44 1 7.1058 -12.3675 -2.1799 45 1 4.7248 -6.8619 -0.3386 46 1 4.6075 -7.1307 -2.0948 47 1 2.2997 -6.2386 -2.0833 48 1 3.4376 -5.0438 -1.4160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360788507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:30 Heat of formation + Delta-G solvation = 35.557531 kcal Electronic energy + Delta-G solvation = -28689.421221 eV Core-core repulsion = 24779.946701 eV Total energy + Delta-G solvation = -3909.474520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46112 -39.23025 -37.71690 -37.52794 -34.67083 -33.84870 -33.09878 -31.22216 -31.02138 -30.70065 -29.29286 -27.27652 -25.04729 -24.72046 -23.38297 -23.07020 -23.01874 -21.25722 -19.91885 -19.39995 -19.14679 -17.82353 -17.23246 -16.74001 -16.04281 -15.64529 -15.18941 -14.91409 -14.83079 -14.75819 -14.59124 -14.56764 -14.24313 -13.91837 -13.78022 -13.47892 -13.25915 -12.97029 -12.68263 -12.29808 -11.92425 -11.85019 -11.79992 -11.69628 -11.50084 -11.44158 -11.36267 -11.08826 -11.04048 -10.94367 -10.54188 -10.49780 -10.31443 -10.29615 -10.24242 -10.18980 -9.44824 -9.03921 -8.39123 -7.93915 -7.79086 -6.38732 -3.79096 1.66894 2.23632 2.79762 3.18693 3.29185 3.36765 3.77957 3.93849 3.98026 3.99952 4.03395 4.10829 4.23623 4.27599 4.57437 4.60268 4.73378 4.80366 4.83036 5.02711 5.09192 5.09991 5.11701 5.23067 5.25914 5.27868 5.33824 5.44806 5.51558 5.53225 5.54425 5.66412 5.68562 5.80271 5.83985 5.87963 6.01667 6.02903 6.08397 6.27382 6.32368 6.48452 6.56801 6.71950 7.34271 7.47099 7.58794 8.10502 8.65622 8.69103 9.21930 9.58376 10.10446 10.79182 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029693 B = 0.002076 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.746903 B =13482.828085 C =13684.662742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.047 3.953 13 N -0.514 5.514 14 C 0.058 3.942 15 C -0.101 4.101 16 C 0.001 3.999 17 C 0.194 3.806 18 N -0.287 5.287 19 N -0.291 5.291 20 C 0.165 3.835 21 N -0.472 5.472 22 C 0.102 3.898 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.032 4.032 26 C -0.100 4.100 27 C 0.056 3.944 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -27.437 -8.881 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.071 4.071 15 C -0.140 4.140 16 C -0.020 4.020 17 C -0.073 4.073 18 N -0.126 5.126 19 N -0.131 5.131 20 C -0.102 4.102 21 N -0.164 5.164 22 C -0.021 4.021 23 C -0.173 4.173 24 C -0.164 4.164 25 C -0.071 4.071 26 C -0.138 4.138 27 C -0.072 4.072 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.920 -26.788 -7.321 28.045 hybrid contribution -1.749 0.350 -1.786 2.524 sum 2.171 -26.438 -9.107 28.047 Atomic orbital electron populations 1.69619 1.05918 1.27965 1.50964 1.25255 0.95633 0.99696 0.97483 0.85812 0.79756 0.81210 0.77646 1.19205 1.20851 1.20778 1.19749 0.93390 0.82198 1.47213 0.87851 1.41882 1.09168 1.04605 1.64640 1.19763 0.88442 0.84557 0.84307 1.90497 1.13658 1.86845 1.54836 1.21834 0.93901 0.91232 1.01476 1.61465 1.25079 1.01338 1.35999 1.22085 0.94900 0.89366 1.00700 1.21572 0.97559 0.97597 0.97279 1.19759 0.91533 0.91074 0.99618 1.24732 1.00584 0.90319 0.91680 1.74535 1.03759 1.13980 1.20320 1.74098 1.22384 1.02142 1.14462 1.24642 0.89948 0.99270 0.96370 1.46012 1.24941 1.19305 1.26110 1.22024 0.94509 0.99571 0.86028 1.21930 1.00965 0.96097 0.98322 1.21706 0.98813 0.98148 0.97738 1.20190 0.98369 0.89213 0.99378 1.21579 0.98431 0.91077 1.02761 1.22243 0.94849 1.01385 0.88702 0.91999 0.77536 0.93581 0.89281 0.95338 0.90297 0.91911 0.89368 0.90416 0.89273 0.88626 0.88912 0.90405 0.91012 0.89635 0.88328 0.88886 0.89291 0.92000 0.96163 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.47 7.46 -10.99 -0.08 10.38 16 11 O -0.57 -15.49 13.90 5.55 0.08 -15.41 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 13 N -0.51 -8.58 4.40 -236.12 -1.04 -9.62 16 14 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 15 C -0.10 -1.23 5.36 -26.65 -0.14 -1.38 16 16 C 0.00 0.01 2.64 -91.65 -0.24 -0.23 16 17 C 0.19 2.55 6.58 -155.45 -1.02 1.52 16 18 N -0.29 -4.72 12.23 32.70 0.40 -4.32 16 19 N -0.29 -4.52 12.21 32.76 0.40 -4.12 16 20 C 0.17 1.87 7.75 -155.30 -1.20 0.66 16 21 N -0.47 -4.86 3.11 -110.85 -0.35 -5.21 16 22 C 0.10 0.58 6.51 -4.00 -0.03 0.56 16 23 C -0.14 -0.50 5.94 -26.49 -0.16 -0.66 16 24 C -0.13 -0.48 5.96 -26.42 -0.16 -0.64 16 25 C -0.03 -0.21 6.34 -27.59 -0.17 -0.38 16 26 C -0.10 -1.43 5.36 -26.65 -0.14 -1.58 16 27 C 0.06 0.90 5.10 -3.83 -0.02 0.88 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 30 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.09 1.43 7.99 -51.92 -0.41 1.02 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.08 0.75 7.44 -51.93 -0.39 0.36 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 41 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.11 2.16 5.78 -51.93 -0.30 1.86 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -35.11 380.58 -10.47 -45.58 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.68 Total: 6.77 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.66 Total: 2.71 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.08 Total: -61.60 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.11 -10.47 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360788507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.138 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds