Wall clock time and date at job start Tue Mar 31 2020 18:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99749 * 2 1 4 4 H 1.48506 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47069 * 299.99925 * 3 2 1 6 6 H 1.48499 * 109.47157 * 59.99943 * 3 2 1 7 7 C 1.38950 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99585 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99746 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00018 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99819 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47141 * 179.97438 * 12 10 9 14 14 C 1.46847 * 111.00220 * 169.99662 * 13 12 10 15 15 C 1.53038 * 109.52973 * 185.83944 * 14 13 12 16 16 C 1.53117 * 109.27502 * 300.82407 * 15 14 13 17 17 C 1.50699 * 109.52261 * 177.55643 * 16 15 14 18 18 N 1.30842 * 126.46634 * 300.24566 * 17 16 15 19 19 N 1.28907 * 109.74360 * 180.23148 * 18 17 16 20 20 C 1.29843 * 109.47712 * 359.73497 * 19 18 17 21 21 N 1.34688 * 126.46852 * 120.12383 * 17 16 15 22 22 C 1.46266 * 128.84506 * 0.10345 * 21 17 16 23 23 C 1.53318 * 108.72988 * 162.64401 * 22 21 17 24 24 C 1.53145 * 109.57817 * 50.29815 * 23 22 21 25 25 C 1.50802 * 128.52384 * 180.14341 * 20 19 18 26 26 C 1.53119 * 109.21564 * 57.61841 * 16 15 14 27 27 C 1.46844 * 111.00083 * 294.20868 * 13 12 10 28 28 H 0.96997 * 120.00162 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99859 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47273 * 59.99418 * 12 10 9 31 31 H 1.09009 * 109.47007 * 299.99592 * 12 10 9 32 32 H 1.09007 * 109.46157 * 65.82486 * 14 13 12 33 33 H 1.09003 * 109.45946 * 305.85232 * 14 13 12 34 34 H 1.09000 * 109.50774 * 180.88044 * 15 14 13 35 35 H 1.09001 * 109.52983 * 60.78012 * 15 14 13 36 36 H 1.09004 * 109.52440 * 297.68336 * 16 15 14 37 37 H 1.08998 * 109.58852 * 282.41702 * 22 21 17 38 38 H 1.09004 * 109.59204 * 42.86904 * 22 21 17 39 39 H 1.09000 * 109.44816 * 170.32850 * 23 22 21 40 40 H 1.08993 * 109.45618 * 290.26244 * 23 22 21 41 41 H 1.08997 * 109.49940 * 50.51009 * 24 23 22 42 42 H 1.09002 * 109.49746 * 170.61639 * 24 23 22 43 43 H 1.08997 * 109.72877 * 44.41543 * 25 20 19 44 44 H 1.08997 * 109.73250 * 283.73555 * 25 20 19 45 45 H 1.08998 * 109.50393 * 62.32135 * 26 16 15 46 46 H 1.09001 * 109.50474 * 182.43411 * 26 16 15 47 47 H 1.09001 * 109.46081 * 294.17174 * 27 13 12 48 48 H 1.08994 * 109.46650 * 54.15269 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5143 -7.2569 0.2359 15 6 2.5508 -8.3744 0.3736 16 6 3.3845 -8.4512 -0.9084 17 6 4.4462 -9.5098 -0.7560 18 7 5.3923 -9.5380 0.1474 19 7 6.1246 -10.5854 -0.0215 20 6 5.6762 -11.2690 -1.0302 21 7 4.5988 -10.6068 -1.5225 22 6 3.8014 -11.0435 -2.6683 23 6 4.6034 -12.0845 -3.4581 24 6 5.1226 -13.1641 -2.5040 25 6 6.2051 -12.5622 -1.5978 26 6 4.0475 -7.0942 -1.1604 27 6 2.9677 -6.0135 -1.2520 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6175 -4.9205 -0.8913 31 1 0.6169 -4.9209 0.8887 32 1 0.8531 -7.4761 -0.6024 33 1 0.9285 -7.1900 1.1527 34 1 2.0420 -9.3249 0.5343 35 1 3.2039 -8.1634 1.2204 36 1 2.7378 -8.7023 -1.7491 37 1 2.8704 -11.4885 -2.3173 38 1 3.5821 -10.1886 -3.3081 39 1 3.9613 -12.5430 -4.2102 40 1 5.4462 -11.5977 -3.9486 41 1 4.3004 -13.5347 -1.8919 42 1 5.5467 -13.9860 -3.0808 43 1 6.4326 -13.2541 -0.7870 44 1 7.1058 -12.3675 -2.1799 45 1 4.7248 -6.8619 -0.3386 46 1 4.6075 -7.1307 -2.0948 47 1 2.2997 -6.2386 -2.0833 48 1 3.4376 -5.0438 -1.4160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360788507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:29 Heat of formation + Delta-G solvation = 11.398181 kcal Electronic energy + Delta-G solvation = -28690.468849 eV Core-core repulsion = 24779.946701 eV Total energy + Delta-G solvation = -3910.522148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.34135 -40.66648 -39.25203 -38.14388 -36.07918 -35.46479 -34.00376 -33.22972 -31.82921 -31.72371 -30.20929 -28.63776 -26.59338 -25.40643 -24.71400 -24.14829 -23.69978 -22.25041 -21.00541 -20.58052 -20.31720 -19.85109 -17.98401 -17.72602 -17.48083 -16.88984 -16.55225 -16.26769 -15.97593 -15.65540 -15.54272 -15.34036 -15.18758 -15.07070 -15.01520 -14.68556 -14.50077 -14.12121 -13.79630 -13.49331 -13.25442 -13.17637 -12.92952 -12.78140 -12.61280 -12.39413 -12.19849 -12.17063 -12.11405 -12.09602 -12.04155 -11.81091 -11.70290 -11.59611 -11.40073 -11.22809 -10.99552 -10.23411 -10.02233 -9.96145 -9.11077 -8.45130 -5.92985 0.81855 1.36459 1.41491 1.52726 1.55588 1.81716 2.08913 2.29423 2.79125 3.10587 3.22004 3.35774 3.41386 3.54464 3.63065 3.76604 3.82259 3.84128 4.03917 4.20479 4.27725 4.29434 4.32236 4.35620 4.41220 4.48972 4.50864 4.54652 4.58674 4.69155 4.71214 4.80635 4.83236 4.85688 4.92098 5.00352 5.04612 5.09266 5.14712 5.18700 5.24166 5.26543 5.41217 5.43368 5.93583 5.98163 6.13968 6.31546 6.63898 7.16001 7.60032 7.74377 8.16898 8.72505 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029693 B = 0.002076 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.746903 B =13482.828085 C =13684.662742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.076 0.924 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.542 5.542 14 C 0.061 3.939 15 C -0.095 4.095 16 C 0.012 3.988 17 C 0.190 3.810 18 N -0.341 5.341 19 N -0.347 5.347 20 C 0.175 3.825 21 N -0.467 5.467 22 C 0.088 3.912 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.035 4.035 26 C -0.091 4.091 27 C 0.062 3.938 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -29.789 -10.960 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.094 0.906 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.268 5.268 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.009 4.009 17 C -0.080 4.080 18 N -0.180 5.180 19 N -0.186 5.186 20 C -0.094 4.094 21 N -0.157 5.157 22 C -0.033 4.033 23 C -0.169 4.169 24 C -0.157 4.157 25 C -0.074 4.074 26 C -0.130 4.130 27 C -0.066 4.066 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.783 -29.169 -9.413 30.702 hybrid contribution -1.044 0.993 -1.161 1.850 sum 0.739 -28.176 -10.574 30.104 Atomic orbital electron populations 1.69670 1.06689 1.29109 1.50687 1.25996 0.96561 1.02264 0.96527 0.84906 0.77953 0.77346 0.78333 1.20077 1.19481 1.19676 1.19652 0.92566 0.84089 1.49555 0.90611 1.41939 1.09294 1.04648 1.65471 1.20892 0.88326 0.86078 0.81959 1.90483 1.15893 1.87776 1.55949 1.21699 0.93464 0.88194 1.03684 1.61375 1.25925 1.02879 1.36600 1.22166 0.95028 0.87042 1.02381 1.21510 0.97091 0.98680 0.96144 1.19712 0.91345 0.89016 1.00812 1.24781 1.00159 0.91341 0.91680 1.74406 1.05506 1.15353 1.22757 1.73977 1.24131 1.03178 1.17335 1.25478 0.89313 0.99788 0.94855 1.46261 1.24803 1.18102 1.26550 1.22535 0.95045 1.00843 0.84896 1.21979 1.01076 0.95417 0.98417 1.21723 0.97923 0.98677 0.97411 1.20495 0.99711 0.87098 1.00127 1.21406 0.97530 0.92506 1.01508 1.22049 0.95426 0.99439 0.89642 0.91369 0.76974 0.90910 0.87121 0.92263 0.89261 0.89287 0.92815 0.86701 0.87275 0.87456 0.85903 0.91017 0.90884 0.87076 0.87845 0.87918 0.93461 0.91204 0.93391 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.58 -29.86 5.29 -306.99 -1.62 -31.48 16 10 C 0.44 21.25 7.46 87.66 0.65 21.90 16 11 O -0.62 -34.89 13.90 -3.06 -0.04 -34.93 16 12 C 0.06 2.08 5.45 85.56 0.47 2.54 16 13 N -0.54 -17.70 4.40 -900.93 -3.96 -21.66 16 14 C 0.06 1.38 5.46 86.33 0.47 1.85 16 15 C -0.10 -2.18 5.36 30.65 0.16 -2.02 16 16 C 0.01 0.27 2.64 -11.46 -0.03 0.24 16 17 C 0.19 4.91 6.58 138.14 0.91 5.82 16 18 N -0.34 -11.81 12.23 -50.46 -0.62 -12.42 16 19 N -0.35 -11.22 12.21 -50.27 -0.61 -11.84 16 20 C 0.17 3.85 7.75 138.14 1.07 4.92 16 21 N -0.47 -8.86 3.11 -504.63 -1.57 -10.43 16 22 C 0.09 0.69 6.51 86.53 0.56 1.25 16 23 C -0.13 -0.44 5.94 30.75 0.18 -0.26 16 24 C -0.12 -0.48 5.96 30.80 0.18 -0.30 16 25 C -0.03 -0.39 6.34 30.04 0.19 -0.20 16 26 C -0.09 -2.66 5.36 30.65 0.16 -2.49 16 27 C 0.06 2.00 5.10 86.33 0.44 2.44 16 28 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 30 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 31 H 0.11 3.33 7.99 -2.38 -0.02 3.31 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.09 1.86 8.02 -2.39 -0.02 1.84 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 1.73 7.44 -2.39 -0.02 1.71 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.62 7.92 -2.38 -0.02 0.61 16 39 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.07 0.37 8.12 -2.39 -0.02 0.35 16 41 H 0.07 0.32 8.12 -2.39 -0.02 0.30 16 42 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 2.58 5.78 -2.39 -0.01 2.56 16 Total: -1.00 -82.91 380.58 0.83 -82.08 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.24 Total: 27.32 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.71 Total: 17.24 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -8.10 Total: -137.55 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.04 Total: -34.93 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.91 0.83 -82.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360788507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.483 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds